Abstract
The Boltzmann machine model for identification of some possible genes mediating different disease has been reported in this paper. The procedure involves grouping of gene-based correlation coefficient using gene expression data sets. The usefulness of the procedure has been demonstrated using human leukemia gene expression data set. The vying of the procedure has been established using three existing gene selection methods like Significance Analysis of Microarray (SAM), Support Vector Machine (SVM), and Signal-to-Noise Ratio (SNR). We have performed biochemical pathway, p-value, t-test, sensitivity, expression profile plots for identifying biological and statistically pertinent gene sets. In this procedure, we have found more number of true positive genes compared to other existing methods.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
Henry, D.: Latest News in Blood Cancer Research. CANCER Care, New York (2010)
Lim, G.: Overview of cancer in Malaysia. J. Clin. Oncol. 32(1), 37–42 (2002) (Japanese)
Lv, J., Peng, Q., Chen, X., Sun, Z.: A multi-objective heuristic algorithm for gene expression microarray data classification. Expert Syst. Appl. 59, 13–19 (2016)
Karakida, R., Okada, M., Amari, S.: Dynamical analysis of contrastive divergence learning: restricted Boltzmann machines with Gaussian visible units. Neural Netw. 79, 78–87 (2016)
Yasuda, M., Horiguchi, T.: Triangular approximation for Ising model and its application to Boltzmann machine. Physica A 368, 83–95 (2006)
Cawley, G.C., Talbot, N.L.C.: Gene selection in cancer classification using sparse logistic regression with Bayesian regularization. Bioinformatics 22, 2348–2355 (2006)
Guyon, I., Weston, J., Barnhill, S.: Gene selection for cancer classification using support vector machines. Mach. Learn. 46, 389–422 (2002)
Zhang, H.H., Ahn, J., Lin, X., Park, C.: Gene selection using support vector machines with non-convex penalty. Bioinformatics 22, 88–95 (2006)
Goh, L., Song, Q., Kasabov, N.: A novel feature selection method to improve classification of gene expression data. In: Asia Pacific Bioinformatics Conference, Dunedin, New Zealand, vol. 29, pp. 161–166 (2004)
De, R.K., Ghosh, A.: Neuro-fuzzy methodology for selecting genes mediating lung cancer. In: 4th International Conference on Pattern Recognition and Machine Intelligence, pp. 388–393 (2011)
Liu, Y., So, R.M.C., Cui, Z.X.: Bluff body flow simulation using lattice Boltzmann equation with multiple relaxation time. Comput. Fluids 35, 951–956 (2006)
National Center for Biotechnology Information. http://www.ncbi.nlm.nih.gov
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2018 Springer Nature Singapore Pte Ltd.
About this paper
Cite this paper
Sheet, S., Ghosh, A., Mandal, S.B. (2018). Selection of Genes Mediating Human Leukemia, Using Boltzmann Machine. In: Choudhary, R., Mandal, J., Bhattacharyya, D. (eds) Advanced Computing and Communication Technologies. Advances in Intelligent Systems and Computing, vol 562. Springer, Singapore. https://doi.org/10.1007/978-981-10-4603-2_9
Download citation
DOI: https://doi.org/10.1007/978-981-10-4603-2_9
Published:
Publisher Name: Springer, Singapore
Print ISBN: 978-981-10-4602-5
Online ISBN: 978-981-10-4603-2
eBook Packages: EngineeringEngineering (R0)