Abstract
Estuaries are, by almost any definition, variable places. Palaeoecological studies attempt to reconstruct past conditions. The validity of reconstructions is dependent on assumptions about the generality of conclusions, commonly based on a small number of samples from a limited spatial area. This Chapter summarises the main geomorphic, biogeochemical and biological processes in estuaries and provides a conceptual framework for understanding the temporal and spatial variability in factors that may affect palaeoecological evidence. We suggest that the ultimate preservation of paleo-indicators within an estuary is governed by the interaction between environmental drivers, estuarine stressors, and biogeochemical/ecological processes. We recognise that these interactions vary on temporal scales from diurnal tidal cycles to millennia, and spatially from a few square metres to whole system and latitudinal scales. We present a series of models that allow palaeoecologists to better understand the environmental context of samples collected from estuaries and make informed assessments of whether, and under what circumstances, the common assumptions may be considered valid.
This is a preview of subscription content, log in via an institution.
Buying options
Tax calculation will be finalised at checkout
Purchases are for personal use only
Learn about institutional subscriptionsReferences
Abril G, Nogueira M, Etcheber H et al (2002) Behaviour of organic carbon in nine contrasting European estuaries. Estuar Coast Shelf Sci 54:241–262
Aller RC (1994) Bioturbation and remineralization of sedimentary organic matter: effects of redox oscillation. Chem Geol 114:331–345
Alongi DM (1998) Coastal ecosystem processes. CRC, Boca Raton
Baeyens W, van Eck B, Lambert C, Wollast R et al (1998) General description of the Scheldt estuary. Hydrobiologia 366:1–14
Bennett BA (1989) A comparison of the fish communities of a nearby permanently open, seasonally open and normally closed estuaries in the south-western cape, South Africa. Afr J Mar Sci 8:43–55
Bennion H, Battarbee RW, Sayer CD et al (2011) Defining reference conditions and restoration targets for lake ecosystems using paleolimnology: a synthesis. J Paleolimnol 45:533–544
Bouillon S, Borges AV, Castañeda-Moya E et al (2008) Mangrove production and carbon sinks: a revision of global budget estimates. Global Biogeochem Cycles 22:30–52
Chen MS, Wartel S, van Eck B, van Maldegem D (2005) Suspended matter in the Scheldt estuary. Hydrobiologia 540:79–104
Cloern JE (1987) Turbidity as a control on phytoplankton biomass and productivity in estuaries. Cont Shelf Res 7:1367–1381
Cloern JE (2001) Our evolving conceptual model of the coastal eutrophication problem. Mar Ecol Prog Ser 210:223–253
Costanza R, Norton BG, Haskell BD (1992) Ecosystem health: new goals for environmental management. Island Press, Washington, DC
Dalrymple RW, Zaitlin BA, Boyd R (1992) Estuarine facies models: conceptual basis and stratigraphic implications. J Sediment Petrol 62:1130–1146
de Jonge VN, van Beusekom JEE (1995) Wind- and tide-induced resuspension of sediment and microphytobenthos from tidal flats in the EMS estuary. Limnol Oceanogr 40:766–778
de Jonge VN, van Beuselom JEE (1992) Contribution of resuspended microphytobenthos to total phytoplankton in the EMS estuary and its possible role for grazers. Neth J Sea Res 30:91–105
Dent DL, Pons LJ (1995) A world perspective on acid sulphate soils. Geoderma 67:263–276
Desmit X, Vanderborght JP, Regnier P, Wollast R (2005) Control of phytoplankton production by physical forcing in a strongly tidal, well-mixed estuary. Biogeosciences 2:205–218
Douglas G, Ford P et al (2005) Carbon and nutrient cycling in a subtropical estuary (the Fitzroy), Central Queensland. CRC for Coastal Zone Estuary and Waterway Management, Brisbane
Dye AH (2006) Inhibition of the decomposition of Zostrea capricornii litter by macrobenthos and meiobenthos in a brackish coastal lake system. Estuar Coast 29:802–809
Elliot M, McLusky DS (2002) The need for definitions in understanding estuaries. Estuar Coast Shelf Sci 55:815–827
Elliott M, Quintino V (2007) The estuarine quality paradox, environmental homeostasis and the difficulty of detecting anthropogenic stress in naturally stressed areas. Mar Pollut Bull 54:640–645
Elliott M, Whitfield AK (2011) Challenging paradigms in estuary ecology and management. Estuar Coast Shelf Sci 94:306–314
Erskine WD, Warner RF (1988) Geomorphic effects of alternating flood-and drought-dominated regimes on NSW coastal rivers. In: Warner RF (ed) Fluvial geomorphology of Australia. Academic, Sydney, pp 223–244
Eyre BD, Ferguson AJP (2002) Comparison of carbon production and decomposition, benthic nutrient fluxes and denitrification in seagrass, phytoplankton, benthic microalgae- and macroalgae-dominated warm-temperate Australian lagoons. Mar Ecol Prog Ser 229:43–59
Eyre BD, Ferguson AJP (2009) Denitrification efficiency for defining critical loads of carbon in shallow coastal ecosystems. Hydrobiologia 629:137–146
Eyre BD, Pont D (2003) Intra- and inter-annual variability in the different forms of diffuse nitrogen and phosphorus delivered to seven sub-tropical east Australian estuaries. Estuar Coast Shelf Sci 57:137–148
Fairbridge RW (1980) The estuary: its definition and geodynamic cycle. In: Olausson E, Cato I (eds) Chemistry and biogeochemistry of estuaries. Wiley, New York
Fairweather PG (1999) Determining the health of estuaries: priorities for ecological research. Aust J Ecol 24:441–451
Ferguson AJP (2012) Review of water quality in the Tweed Estuary 2007–2011. Tweed Shire Council, Murwillumbah
Ferguson AJP, Eyre BD (2010) Carbon and nitrogen cycling in a shallow productive sub-tropical coastal embayment (western Moreton Bay, Australia). Ecosystems 13:1127–1144
Ferguson AJP, Eyre BD (2012) Interaction of benthic microalgae and macrofauna in the control of benthic metabolism, nutrient fluxes and denitrification in a shallow sub-tropical coastal embayment (western Moreton Bay, Australia). Biogeochemistry. doi:10.1007/s10533-012-9736-x
Ferguson AJP, Eyre BD, Gay JM (2004) Nutrient cycling in the sub-tropical Brunswick estuary, Australia. Estuaries 27:1–17
Fichez R (1990) Absence of redox potential discontinuity in dark submarine cave sediments as evidence of oligotrophic conditions. Estuar Coast Shelf Sci 31:875–881
Ford PW, Robson B, Tillman P et al (2005) Organic carbon deliveries and their flow related dynamics in the Fitzroy estuary. Mar Pollut Bull 51:119–127
Gay JM (2002) Pelagic and benthic metabolism in three sub-tropical Australian estuaries. PhD thesis, Southern Cross University
Gazeau F, Gattuso J-P, Middelburg JJ et al (2005) Planktonic and whole system metabolism in a nutrient-rich estuary (the Scheldt estuary). Estuaries 28:868–883
Glibert PM, Burkholder JM (2006) The complex relationships between increases in fertilisation of the earth, coastal eutrophication and proliferation of harmful algal blooms. In: Graneli E, Turner JT (eds) Ecology of harmful algae. Springer, Berlin, pp 341–354
Haines PE, Tomlinson RB, Thom BG (2006) Morphometric assessment of intermittently open/closed coastal lagoons in New South Wales, Australia. Estuar Coast Shelf Sci 67:321–332
Hannan JC, Williams RJ (1998) Recruitment of juvenile marine fishes to seagrass habitat in a temperature Australian estuary. Estuaries 21:29–51
Harris GP (2001) Biogeochemistry of nitrogen and phosphorus in Australian catchments, rivers and estuaries: effects of land use and flow regulation and comparisons with global patterns. Mar Freshw Res 52:139–150
Heap AD, Bryce S, Ryan DA (2004) Facies evolution of Holocene estuaries and deltas: a large-sample statistical study from Australia. Sediment Geol 168:1–17
Hemminga MA, Duarte CM (2000) Seagrass ecology. Cambridge University Press, Cambridge
Holling CS (1973) Resilience and stability of ecological systems. Annu Rev Ecol Syst 4:1–23
Holling CS (1996) Engineering resilience versus ecological resilience. In: Schulze P (ed) Engineering within ecological constraints. National Academy of Sciences, Washington, DC
Hooper DU, Chapin FS, Ewel JJ et al (2005) Effects of biodiversity on ecosystem functioning: a consensus of current knowledge. Ecol Monogr 75:3–35
Hossain S, Eyre BD, McConchie D (2002) Spatial and temporal variations of suspended sediment responses from the subtropical Richmond River catchment, NSW, Australia. Aust J Soil Res 40:419–432
Hossain S, Eyre BD, McKee LJ (2004) Impacts of dredging on dry season suspended sediment concentrations in the Brisbane River Estuary, Queensland Australia. Estuar Coast Shelf Sci 61:539–545
Howarth RW, Billen G, Swaney D et al (1996) Regional nitrogen budgets and riverine N & P fluxes for the drainages to the North Atlantic Ocean: natural and human influences. Biogeochemistry 35:73–139
Jassby AD, Cloern JE, Powell TM (1993) Organic carbon sources and sinks in San Francisco Bay: variability induced by river flow. Mar Ecol Prog Ser 95:39–54
Jones MV, West RJ (2005) Spatial and temporal variability of seagrass fishes in intermittently closed and open coastal lakes in southeastern Australia. Estuar Coast Shelf Sci 64:277–288
Jϕrgensen BB (1996) Material flux in the sediment. In: Jϕrgensen BB, Richardson K (eds) Eutrophication in coastal marine ecosystems. American Geophysical Union, Washington, DC, pp 115–135
Kemp WM, Boynton WR (1984) Spatial and temporal coupling of nutrient inputs to estuarine primary production: the role of particulate transport and decomposition. Bull Mar Sci 33:522–535
Kemp WM, Boynton WR, Adolf JE et al (2005) Eutrophication of Chesapeake Bay: historical trends and ecological interactions. Mar Ecol Prog Ser 303:1–29
Kennish MJ (ed) (1986) Ecology of estuaries. CRC, Boca Raton
Kjerfve B, Magill KE (1989) Geographic and hydrodynamic characteristics of shallow coastal lagoons. Mar Geol 88:26–33
Krantzberg G (1985) The influence of bioturbation on physical, chemical, and biological parameters in aquatic environments: a review. Environ Pollut A 39:99–122
Kristensen E (2000) Organic matter diagenesis at the oxic/anoxic interface in coastal marine sediments, with emphasis on the role of burrowing organisms. Hydrobiologia 426:1–24
Lawson SE, Wiberg PL, McGlathery KJ et al (2007) Wind-driven sediment resuspension controls light availability in a shallow coastal lagoon. Estuar Coast 30:102–112
Logan B, Taffs KH, Eyre B et al (2011) Assessing changes in nutrient status in the Richmond River estuary, Australia, using paleolimnological methods. J Paleolimnol 46(4):597–611
Loneragan NR, Potter IC (1990) Factors influencing community structure and distribution of different life-cycle categories of fishes in shallow waters of a large Australian estuary. Mar Biol 106:25–37
Lucas CH, Banham C, Hooligan PM (2001) Benthic-pelagic exchange of microalgae at a tidal flat. 2. Taxonomic analysis. Mar Ecol Prog Ser 212:39–52
Maher DT, Eyre BD (2012) Carbon budgets for three autotrophic Australian estuaries: implications for global estimates of the coastal air-water CO2 flux. Global Biogeochem Cycles 26(1):doi:10.1029/2011GB004075
Maher DT, Santos IR, Golsby-Smith L, Gleeson J, Eyre BD (2013) Groundwater-derived dissolved inorganic and organic carbon exports from a mangrove tidal creek: the missing mangrove carbon sink? Limnol Oceanogr 58:475–488
Maie N, Boyer JN, Yang C et al (2006) Spatial, geomorphological, and seasonal variability of CDOM in estuaries of the Florida Coastal everglades. Hydrobiologia 569:135–150
Manning AJ, Langston WJ, Jonas PJ (2010) A review of sediment dynamics in the Severn Estuary: influence of flocculation. Mar Pollut Bull 61:37–51
Marcomini A, Sfriso A, Pavoni B et al (1995) Eutrophication of the Lagoon of Venice: nutrient loads and exchanges. In: McComb AJ (ed) Eutrophic shallow estuaries and lagoons. CRC, Baton Roca, pp 59–80
Margalef R (1981) Stress in ecosystems: a future approach. In: Barrett GW, Rosenberg R (eds) Stress on natural ecosystems. Wiley, New York
McLuskey DS, Elliott M (2004) The estuarine ecosystem, 3rd edn. Oxford University Press, Oxford
Middelburg JJ, Herman PMJ (2007) Organic matter processing in tidal estuaries. Mar Chem 106:127–147
Middelburg JJ, Nieuwenhuize J (2000) Uptake of dissolved inorganic nitrogen in turbid, tidal estuaries. Mar Ecol Prog Ser 192:79–88
Moncreiff CA, Sullivan MJ (2001) Trophic importance of epiphytic algae in subtropical seagrass beds: evidence from multiple stable isotope analyses. Mar Ecol Prog Ser 215:93–106
Nixon S (1981) Remineralization and nutrient cycling in coastal marine ecosystems. In: Neilson BJ, Cronin LE (eds) Estuaries and nutrients. Humana, Clifton, pp 111–138
Nixon S (1997) Prehistoric nutrient inputs and productivity in Narragansett Bay. Estuaries 20:253–261
Pearson TH, Rosenberg R (1978) Macrobenthic succession in relation to organic enrichment and pollution of the marine environment. Oceanogr Mar Biol 16:229–311
Peterson G, Allen CR, Holling CS (1998) Ecological resilience, biodiversity and scale. Ecosystems 1:6–18
Pollard DA (1994) Opening regimes and salinity characteristics of intermittently opening and permanently open coastal lagoons on the south coast of New South Wales. Wetlands (Australia) 13:16–35
Potter IC, Chuwen BM, Hoeksema SD et al (2010) The concept of an estuary: a definition that incorporates systems which can become closed to the ocean and hypersaline. Estuar Coast Shelf Sci 87:497–500
Pritchard DW (1967) What is an estuary: a physical viewpoint. In: Lauff GH (ed) Estuaries. American Association for the Advancement of Science, Washington, DC
Redden AM, Kobayashi T, Suthers I et al (2009) Coastal and marine phytoplankton: diversity and ecology. In: Suthers I, Rissik D (eds) Plankton: a guide to their ecology and monitoring for water quality. CSIRO Publishing, Collingwood, pp 141–155
Reid MA, Tibby JC, Penny D et al (1995) The use of diatoms to assess past and present water quality. Aust J Ecol 20:57–64
Remane A (1934) Die Brackwasserfauna. Verhandlungen Der Deutschen Zoologischen Gesellschaft 36:34–74
Remane A, Schlieper C (1958) Die biologie des brackwassers. Schweizerbartsche Verlagsbuchhandlung, Stuttgart
Rosenberg R, Nilsson HC et al (2001) Response of benthic fauna and changing sediment redox profiles over a hypoxic gradient. Estuar Coast Shelf Sci 53:343–350
Roy PS, Williams RJ, Jones AR et al (2001) Structure and function of south-east Australian estuaries. Estuar Coast Shelf Sci 53:351–384
Santos IR, Eyre BD (2011) Radon tracing of groundwater discharge into an Australian estuary surrounded by coastal acid sulphate soils. J Hydrol 396:246–257
Saunders KM (2011) A diatom dataset and diatom-salinity inference model for southeast Australian estuaries and coastal lakes. J Paleolimnol 46:525–542
Scanes PR, Coade G (2012) Nadgee Lake—challenging preconceptions about pristine estuaries. In: Sainty G, Hosking J, Carr G et al (eds) Estuary plants and what’s happening to them in south-east Australia. Sainty and Associates, Sydney
Scanes P, Coade G, Doherty M, Hill R (2007) Evaluation of the utility of water quality based indicators of estuarine lagoon condition in NSW, Australia. Estuar Coast Shelf Sci 74:306–319
Scanes PR, McCartin B, Kearney B et al (2010) Ecological condition of the lower Myall River Estuary. NSW Department of Environment Climate Change and Water, Sydney
Scanes PR, Dela-Cruz J, Coade G et al (2011) Aquatic Inventory of Nadgee Lake, Nadgee River and Merrica River estuaries. Proc Linn Soc NSW 132:169–186
Skilbeck CG, Heap AD, Woodroffe CD (2017a) Geology and sedimentary history of modern estuaries. In: Weckström K, Saunders KM, Gell PA, Skilbeck CG (eds) Applications of paleoenvironmental techniques in estuarine studies, vol 20, Developments in paleoenvironmental research. Springer, Dordrecht
Skilbeck CG, Trevathan-Tackett S, Apichanangkool P et al (2017b) Sediment sampling in estuaries: site selection and sampling techniques. In: Weckström K, Saunders KM, Gell PA, Skilbeck CG (eds) Applications of paleoenvironmental techniques in estuarine studies, vol 20, Developments in paleoenvironmental research. Springer, Dordrecht
Smith SV, Swaney DP, Talaue-Mcmanus L et al (2003) Humans, hydrology, and the distribution of inorganic nutrient loading to the ocean. Bioscience 53:235–245
Taffs KH, Farago LJ, Heijnis H et al (2008) A diatom-based Holocene record of human impact from a coastal environment: Tuckean Swamp, eastern Australia. J Paleolimnol 39:71–82
Tagliapietra D, Sigovini M, Volpi Ghirardini A (2009) A review of terms and definitions to categorise estuaries, lagoons and associated environments. Mar Freshw Res 60:497–509
Ubertini M, Lefebvre S, Gangnery A et al (2012) Spatial variability of benthic-pelagic coupling in an estuary ecosystem: consequences for microphytobenthos resuspension phenomenon. PLoS One 7, e44155. doi:10.1371/journal.pone.0044155
Valiela I, McClelland J, Hauxwell J et al (1997) Macroalgal blooms in shallow estuaries: controls and ecophysiological and ecosystem consequence. Limnol Oceanogr 42:1105–1118
Whitfield AK, Elliott M (2011) Ecosystem and biotic classifications of estuaries and coasts. In: Wolanski E, McLusky DS (eds) Treatise on estuaries and coasts. Elsevier, Amsterdam, pp 99–124
Whitfield AK, Elliot M, Basset A et al (2012) Paradigms in estuarine ecology—a review of the Remane diagram with a suggested revised model for estuaries. Estuar Coast Shelf Sci 97:78–90
Young GC, Potter IC, Hyndes GA, de Lestang S (1997) The ichthyofauna of an intermittently open estuary: implications of bar breaching and low salinities on faunal composition. Estuar Coast Shelf Sci 45:53–68
Acknowledgements
We wish to thank all members of the Estuary and Catchments Science Team at the Office of Environment and Heritage for their participation in the research that has formed the foundations of this Chapter. The research has been supported by funding from Office of Environment and Heritage, Great Lakes Council, Wyong Council, Lake Macquarie Council, Australian Government (Caring for Our Country, Coastal Catchments Initiative) and OEH Estuary Management Fund. The manuscript has been improved by comments from Kaarina Weckström, Greg Skilbeck and two anonymous reviewers. Thanks to Kathryn Taffs for initially seeking our input into this subject.
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2017 Springer Science+Business Media B.V.
About this chapter
Cite this chapter
Scanes, P., Ferguson, A., Potts, J. (2017). Estuary Form and Function: Implications for Palaeoecological Studies. In: Weckström, K., Saunders, K., Gell, P., Skilbeck, C. (eds) Applications of Paleoenvironmental Techniques in Estuarine Studies. Developments in Paleoenvironmental Research, vol 20. Springer, Dordrecht. https://doi.org/10.1007/978-94-024-0990-1_2
Download citation
DOI: https://doi.org/10.1007/978-94-024-0990-1_2
Published:
Publisher Name: Springer, Dordrecht
Print ISBN: 978-94-024-0988-8
Online ISBN: 978-94-024-0990-1
eBook Packages: Earth and Environmental ScienceEarth and Environmental Science (R0)