Skip to main content

Estuary Form and Function: Implications for Palaeoecological Studies

  • Chapter
  • First Online:

Part of the book series: Developments in Paleoenvironmental Research ((DPER,volume 20))

Abstract

Estuaries are, by almost any definition, variable places. Palaeoecological studies attempt to reconstruct past conditions. The validity of reconstructions is dependent on assumptions about the generality of conclusions, commonly based on a small number of samples from a limited spatial area. This Chapter summarises the main geomorphic, biogeochemical and biological processes in estuaries and provides a conceptual framework for understanding the temporal and spatial variability in factors that may affect palaeoecological evidence. We suggest that the ultimate preservation of paleo-indicators within an estuary is governed by the interaction between environmental drivers, estuarine stressors, and biogeochemical/ecological processes. We recognise that these interactions vary on temporal scales from diurnal tidal cycles to millennia, and spatially from a few square metres to whole system and latitudinal scales. We present a series of models that allow palaeoecologists to better understand the environmental context of samples collected from estuaries and make informed assessments of whether, and under what circumstances, the common assumptions may be considered valid.

This is a preview of subscription content, log in via an institution.

Buying options

Chapter
USD   29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD   89.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD   119.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD   119.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Learn about institutional subscriptions

References

  • Abril G, Nogueira M, Etcheber H et al (2002) Behaviour of organic carbon in nine contrasting European estuaries. Estuar Coast Shelf Sci 54:241–262

    Article  CAS  Google Scholar 

  • Aller RC (1994) Bioturbation and remineralization of sedimentary organic matter: effects of redox oscillation. Chem Geol 114:331–345

    Article  CAS  Google Scholar 

  • Alongi DM (1998) Coastal ecosystem processes. CRC, Boca Raton

    Google Scholar 

  • Baeyens W, van Eck B, Lambert C, Wollast R et al (1998) General description of the Scheldt estuary. Hydrobiologia 366:1–14

    Article  Google Scholar 

  • Bennett BA (1989) A comparison of the fish communities of a nearby permanently open, seasonally open and normally closed estuaries in the south-western cape, South Africa. Afr J Mar Sci 8:43–55

    Article  Google Scholar 

  • Bennion H, Battarbee RW, Sayer CD et al (2011) Defining reference conditions and restoration targets for lake ecosystems using paleolimnology: a synthesis. J Paleolimnol 45:533–544

    Article  Google Scholar 

  • Bouillon S, Borges AV, Castañeda-Moya E et al (2008) Mangrove production and carbon sinks: a revision of global budget estimates. Global Biogeochem Cycles 22:30–52

    Article  Google Scholar 

  • Chen MS, Wartel S, van Eck B, van Maldegem D (2005) Suspended matter in the Scheldt estuary. Hydrobiologia 540:79–104

    Article  Google Scholar 

  • Cloern JE (1987) Turbidity as a control on phytoplankton biomass and productivity in estuaries. Cont Shelf Res 7:1367–1381

    Article  Google Scholar 

  • Cloern JE (2001) Our evolving conceptual model of the coastal eutrophication problem. Mar Ecol Prog Ser 210:223–253

    Article  CAS  Google Scholar 

  • Costanza R, Norton BG, Haskell BD (1992) Ecosystem health: new goals for environmental management. Island Press, Washington, DC

    Google Scholar 

  • Dalrymple RW, Zaitlin BA, Boyd R (1992) Estuarine facies models: conceptual basis and stratigraphic implications. J Sediment Petrol 62:1130–1146

    Article  Google Scholar 

  • de Jonge VN, van Beusekom JEE (1995) Wind- and tide-induced resuspension of sediment and microphytobenthos from tidal flats in the EMS estuary. Limnol Oceanogr 40:766–778

    Google Scholar 

  • de Jonge VN, van Beuselom JEE (1992) Contribution of resuspended microphytobenthos to total phytoplankton in the EMS estuary and its possible role for grazers. Neth J Sea Res 30:91–105

    Article  Google Scholar 

  • Dent DL, Pons LJ (1995) A world perspective on acid sulphate soils. Geoderma 67:263–276

    Article  Google Scholar 

  • Desmit X, Vanderborght JP, Regnier P, Wollast R (2005) Control of phytoplankton production by physical forcing in a strongly tidal, well-mixed estuary. Biogeosciences 2:205–218

    Article  Google Scholar 

  • Douglas G, Ford P et al (2005) Carbon and nutrient cycling in a subtropical estuary (the Fitzroy), Central Queensland. CRC for Coastal Zone Estuary and Waterway Management, Brisbane

    Google Scholar 

  • Dye AH (2006) Inhibition of the decomposition of Zostrea capricornii litter by macrobenthos and meiobenthos in a brackish coastal lake system. Estuar Coast 29:802–809

    Article  Google Scholar 

  • Elliot M, McLusky DS (2002) The need for definitions in understanding estuaries. Estuar Coast Shelf Sci 55:815–827

    Article  Google Scholar 

  • Elliott M, Quintino V (2007) The estuarine quality paradox, environmental homeostasis and the difficulty of detecting anthropogenic stress in naturally stressed areas. Mar Pollut Bull 54:640–645

    Article  CAS  Google Scholar 

  • Elliott M, Whitfield AK (2011) Challenging paradigms in estuary ecology and management. Estuar Coast Shelf Sci 94:306–314

    Article  Google Scholar 

  • Erskine WD, Warner RF (1988) Geomorphic effects of alternating flood-and drought-dominated regimes on NSW coastal rivers. In: Warner RF (ed) Fluvial geomorphology of Australia. Academic, Sydney, pp 223–244

    Google Scholar 

  • Eyre BD, Ferguson AJP (2002) Comparison of carbon production and decomposition, benthic nutrient fluxes and denitrification in seagrass, phytoplankton, benthic microalgae- and macroalgae-dominated warm-temperate Australian lagoons. Mar Ecol Prog Ser 229:43–59

    Article  CAS  Google Scholar 

  • Eyre BD, Ferguson AJP (2009) Denitrification efficiency for defining critical loads of carbon in shallow coastal ecosystems. Hydrobiologia 629:137–146

    Article  CAS  Google Scholar 

  • Eyre BD, Pont D (2003) Intra- and inter-annual variability in the different forms of diffuse nitrogen and phosphorus delivered to seven sub-tropical east Australian estuaries. Estuar Coast Shelf Sci 57:137–148

    Article  CAS  Google Scholar 

  • Fairbridge RW (1980) The estuary: its definition and geodynamic cycle. In: Olausson E, Cato I (eds) Chemistry and biogeochemistry of estuaries. Wiley, New York

    Google Scholar 

  • Fairweather PG (1999) Determining the health of estuaries: priorities for ecological research. Aust J Ecol 24:441–451

    Article  Google Scholar 

  • Ferguson AJP (2012) Review of water quality in the Tweed Estuary 2007–2011. Tweed Shire Council, Murwillumbah

    Google Scholar 

  • Ferguson AJP, Eyre BD (2010) Carbon and nitrogen cycling in a shallow productive sub-tropical coastal embayment (western Moreton Bay, Australia). Ecosystems 13:1127–1144

    Article  CAS  Google Scholar 

  • Ferguson AJP, Eyre BD (2012) Interaction of benthic microalgae and macrofauna in the control of benthic metabolism, nutrient fluxes and denitrification in a shallow sub-tropical coastal embayment (western Moreton Bay, Australia). Biogeochemistry. doi:10.1007/s10533-012-9736-x

    Google Scholar 

  • Ferguson AJP, Eyre BD, Gay JM (2004) Nutrient cycling in the sub-tropical Brunswick estuary, Australia. Estuaries 27:1–17

    Article  CAS  Google Scholar 

  • Fichez R (1990) Absence of redox potential discontinuity in dark submarine cave sediments as evidence of oligotrophic conditions. Estuar Coast Shelf Sci 31:875–881

    Article  Google Scholar 

  • Ford PW, Robson B, Tillman P et al (2005) Organic carbon deliveries and their flow related dynamics in the Fitzroy estuary. Mar Pollut Bull 51:119–127

    Article  CAS  Google Scholar 

  • Gay JM (2002) Pelagic and benthic metabolism in three sub-tropical Australian estuaries. PhD thesis, Southern Cross University

    Google Scholar 

  • Gazeau F, Gattuso J-P, Middelburg JJ et al (2005) Planktonic and whole system metabolism in a nutrient-rich estuary (the Scheldt estuary). Estuaries 28:868–883

    Article  CAS  Google Scholar 

  • Glibert PM, Burkholder JM (2006) The complex relationships between increases in fertilisation of the earth, coastal eutrophication and proliferation of harmful algal blooms. In: Graneli E, Turner JT (eds) Ecology of harmful algae. Springer, Berlin, pp 341–354

    Chapter  Google Scholar 

  • Haines PE, Tomlinson RB, Thom BG (2006) Morphometric assessment of intermittently open/closed coastal lagoons in New South Wales, Australia. Estuar Coast Shelf Sci 67:321–332

    Article  Google Scholar 

  • Hannan JC, Williams RJ (1998) Recruitment of juvenile marine fishes to seagrass habitat in a temperature Australian estuary. Estuaries 21:29–51

    Article  Google Scholar 

  • Harris GP (2001) Biogeochemistry of nitrogen and phosphorus in Australian catchments, rivers and estuaries: effects of land use and flow regulation and comparisons with global patterns. Mar Freshw Res 52:139–150

    Article  CAS  Google Scholar 

  • Heap AD, Bryce S, Ryan DA (2004) Facies evolution of Holocene estuaries and deltas: a large-sample statistical study from Australia. Sediment Geol 168:1–17

    Article  Google Scholar 

  • Hemminga MA, Duarte CM (2000) Seagrass ecology. Cambridge University Press, Cambridge

    Book  Google Scholar 

  • Holling CS (1973) Resilience and stability of ecological systems. Annu Rev Ecol Syst 4:1–23

    Article  Google Scholar 

  • Holling CS (1996) Engineering resilience versus ecological resilience. In: Schulze P (ed) Engineering within ecological constraints. National Academy of Sciences, Washington, DC

    Google Scholar 

  • Hooper DU, Chapin FS, Ewel JJ et al (2005) Effects of biodiversity on ecosystem functioning: a consensus of current knowledge. Ecol Monogr 75:3–35

    Article  Google Scholar 

  • Hossain S, Eyre BD, McConchie D (2002) Spatial and temporal variations of suspended sediment responses from the subtropical Richmond River catchment, NSW, Australia. Aust J Soil Res 40:419–432

    Article  Google Scholar 

  • Hossain S, Eyre BD, McKee LJ (2004) Impacts of dredging on dry season suspended sediment concentrations in the Brisbane River Estuary, Queensland Australia. Estuar Coast Shelf Sci 61:539–545

    Article  Google Scholar 

  • Howarth RW, Billen G, Swaney D et al (1996) Regional nitrogen budgets and riverine N & P fluxes for the drainages to the North Atlantic Ocean: natural and human influences. Biogeochemistry 35:73–139

    Google Scholar 

  • Jassby AD, Cloern JE, Powell TM (1993) Organic carbon sources and sinks in San Francisco Bay: variability induced by river flow. Mar Ecol Prog Ser 95:39–54

    Article  CAS  Google Scholar 

  • Jones MV, West RJ (2005) Spatial and temporal variability of seagrass fishes in intermittently closed and open coastal lakes in southeastern Australia. Estuar Coast Shelf Sci 64:277–288

    Article  Google Scholar 

  • Jϕrgensen BB (1996) Material flux in the sediment. In: Jϕrgensen BB, Richardson K (eds) Eutrophication in coastal marine ecosystems. American Geophysical Union, Washington, DC, pp 115–135

    Chapter  Google Scholar 

  • Kemp WM, Boynton WR (1984) Spatial and temporal coupling of nutrient inputs to estuarine primary production: the role of particulate transport and decomposition. Bull Mar Sci 33:522–535

    Google Scholar 

  • Kemp WM, Boynton WR, Adolf JE et al (2005) Eutrophication of Chesapeake Bay: historical trends and ecological interactions. Mar Ecol Prog Ser 303:1–29

    Article  Google Scholar 

  • Kennish MJ (ed) (1986) Ecology of estuaries. CRC, Boca Raton

    Google Scholar 

  • Kjerfve B, Magill KE (1989) Geographic and hydrodynamic characteristics of shallow coastal lagoons. Mar Geol 88:26–33

    Article  Google Scholar 

  • Krantzberg G (1985) The influence of bioturbation on physical, chemical, and biological parameters in aquatic environments: a review. Environ Pollut A 39:99–122

    Article  CAS  Google Scholar 

  • Kristensen E (2000) Organic matter diagenesis at the oxic/anoxic interface in coastal marine sediments, with emphasis on the role of burrowing organisms. Hydrobiologia 426:1–24

    Article  CAS  Google Scholar 

  • Lawson SE, Wiberg PL, McGlathery KJ et al (2007) Wind-driven sediment resuspension controls light availability in a shallow coastal lagoon. Estuar Coast 30:102–112

    Article  Google Scholar 

  • Logan B, Taffs KH, Eyre B et al (2011) Assessing changes in nutrient status in the Richmond River estuary, Australia, using paleolimnological methods. J Paleolimnol 46(4):597–611

    Article  Google Scholar 

  • Loneragan NR, Potter IC (1990) Factors influencing community structure and distribution of different life-cycle categories of fishes in shallow waters of a large Australian estuary. Mar Biol 106:25–37

    Article  Google Scholar 

  • Lucas CH, Banham C, Hooligan PM (2001) Benthic-pelagic exchange of microalgae at a tidal flat. 2. Taxonomic analysis. Mar Ecol Prog Ser 212:39–52

    Article  Google Scholar 

  • Maher DT, Eyre BD (2012) Carbon budgets for three autotrophic Australian estuaries: implications for global estimates of the coastal air-water CO2 flux. Global Biogeochem Cycles 26(1):doi:10.1029/2011GB004075

  • Maher DT, Santos IR, Golsby-Smith L, Gleeson J, Eyre BD (2013) Groundwater-derived dissolved inorganic and organic carbon exports from a mangrove tidal creek: the missing mangrove carbon sink? Limnol Oceanogr 58:475–488

    Article  CAS  Google Scholar 

  • Maie N, Boyer JN, Yang C et al (2006) Spatial, geomorphological, and seasonal variability of CDOM in estuaries of the Florida Coastal everglades. Hydrobiologia 569:135–150

    Article  CAS  Google Scholar 

  • Manning AJ, Langston WJ, Jonas PJ (2010) A review of sediment dynamics in the Severn Estuary: influence of flocculation. Mar Pollut Bull 61:37–51

    Article  CAS  Google Scholar 

  • Marcomini A, Sfriso A, Pavoni B et al (1995) Eutrophication of the Lagoon of Venice: nutrient loads and exchanges. In: McComb AJ (ed) Eutrophic shallow estuaries and lagoons. CRC, Baton Roca, pp 59–80

    Google Scholar 

  • Margalef R (1981) Stress in ecosystems: a future approach. In: Barrett GW, Rosenberg R (eds) Stress on natural ecosystems. Wiley, New York

    Google Scholar 

  • McLuskey DS, Elliott M (2004) The estuarine ecosystem, 3rd edn. Oxford University Press, Oxford

    Book  Google Scholar 

  • Middelburg JJ, Herman PMJ (2007) Organic matter processing in tidal estuaries. Mar Chem 106:127–147

    Article  CAS  Google Scholar 

  • Middelburg JJ, Nieuwenhuize J (2000) Uptake of dissolved inorganic nitrogen in turbid, tidal estuaries. Mar Ecol Prog Ser 192:79–88

    Article  CAS  Google Scholar 

  • Moncreiff CA, Sullivan MJ (2001) Trophic importance of epiphytic algae in subtropical seagrass beds: evidence from multiple stable isotope analyses. Mar Ecol Prog Ser 215:93–106

    Article  CAS  Google Scholar 

  • Nixon S (1981) Remineralization and nutrient cycling in coastal marine ecosystems. In: Neilson BJ, Cronin LE (eds) Estuaries and nutrients. Humana, Clifton, pp 111–138

    Chapter  Google Scholar 

  • Nixon S (1997) Prehistoric nutrient inputs and productivity in Narragansett Bay. Estuaries 20:253–261

    Article  CAS  Google Scholar 

  • Pearson TH, Rosenberg R (1978) Macrobenthic succession in relation to organic enrichment and pollution of the marine environment. Oceanogr Mar Biol 16:229–311

    Google Scholar 

  • Peterson G, Allen CR, Holling CS (1998) Ecological resilience, biodiversity and scale. Ecosystems 1:6–18

    Article  Google Scholar 

  • Pollard DA (1994) Opening regimes and salinity characteristics of intermittently opening and permanently open coastal lagoons on the south coast of New South Wales. Wetlands (Australia) 13:16–35

    Google Scholar 

  • Potter IC, Chuwen BM, Hoeksema SD et al (2010) The concept of an estuary: a definition that incorporates systems which can become closed to the ocean and hypersaline. Estuar Coast Shelf Sci 87:497–500

    Article  CAS  Google Scholar 

  • Pritchard DW (1967) What is an estuary: a physical viewpoint. In: Lauff GH (ed) Estuaries. American Association for the Advancement of Science, Washington, DC

    Google Scholar 

  • Redden AM, Kobayashi T, Suthers I et al (2009) Coastal and marine phytoplankton: diversity and ecology. In: Suthers I, Rissik D (eds) Plankton: a guide to their ecology and monitoring for water quality. CSIRO Publishing, Collingwood, pp 141–155

    Google Scholar 

  • Reid MA, Tibby JC, Penny D et al (1995) The use of diatoms to assess past and present water quality. Aust J Ecol 20:57–64

    Article  Google Scholar 

  • Remane A (1934) Die Brackwasserfauna. Verhandlungen Der Deutschen Zoologischen Gesellschaft 36:34–74

    Google Scholar 

  • Remane A, Schlieper C (1958) Die biologie des brackwassers. Schweizerbartsche Verlagsbuchhandlung, Stuttgart

    Google Scholar 

  • Rosenberg R, Nilsson HC et al (2001) Response of benthic fauna and changing sediment redox profiles over a hypoxic gradient. Estuar Coast Shelf Sci 53:343–350

    Article  CAS  Google Scholar 

  • Roy PS, Williams RJ, Jones AR et al (2001) Structure and function of south-east Australian estuaries. Estuar Coast Shelf Sci 53:351–384

    Article  Google Scholar 

  • Santos IR, Eyre BD (2011) Radon tracing of groundwater discharge into an Australian estuary surrounded by coastal acid sulphate soils. J Hydrol 396:246–257

    Article  CAS  Google Scholar 

  • Saunders KM (2011) A diatom dataset and diatom-salinity inference model for southeast Australian estuaries and coastal lakes. J Paleolimnol 46:525–542

    Article  Google Scholar 

  • Scanes PR, Coade G (2012) Nadgee Lake—challenging preconceptions about pristine estuaries. In: Sainty G, Hosking J, Carr G et al (eds) Estuary plants and what’s happening to them in south-east Australia. Sainty and Associates, Sydney

    Google Scholar 

  • Scanes P, Coade G, Doherty M, Hill R (2007) Evaluation of the utility of water quality based indicators of estuarine lagoon condition in NSW, Australia. Estuar Coast Shelf Sci 74:306–319

    Google Scholar 

  • Scanes PR, McCartin B, Kearney B et al (2010) Ecological condition of the lower Myall River Estuary. NSW Department of Environment Climate Change and Water, Sydney

    Google Scholar 

  • Scanes PR, Dela-Cruz J, Coade G et al (2011) Aquatic Inventory of Nadgee Lake, Nadgee River and Merrica River estuaries. Proc Linn Soc NSW 132:169–186

    Google Scholar 

  • Skilbeck CG, Heap AD, Woodroffe CD (2017a) Geology and sedimentary history of modern estuaries. In: Weckström K, Saunders KM, Gell PA, Skilbeck CG (eds) Applications of paleoenvironmental techniques in estuarine studies, vol 20, Developments in paleoenvironmental research. Springer, Dordrecht

    Google Scholar 

  • Skilbeck CG, Trevathan-Tackett S, Apichanangkool P et al (2017b) Sediment sampling in estuaries: site selection and sampling techniques. In: Weckström K, Saunders KM, Gell PA, Skilbeck CG (eds) Applications of paleoenvironmental techniques in estuarine studies, vol 20, Developments in paleoenvironmental research. Springer, Dordrecht

    Google Scholar 

  • Smith SV, Swaney DP, Talaue-Mcmanus L et al (2003) Humans, hydrology, and the distribution of inorganic nutrient loading to the ocean. Bioscience 53:235–245

    Article  Google Scholar 

  • Taffs KH, Farago LJ, Heijnis H et al (2008) A diatom-based Holocene record of human impact from a coastal environment: Tuckean Swamp, eastern Australia. J Paleolimnol 39:71–82

    Article  Google Scholar 

  • Tagliapietra D, Sigovini M, Volpi Ghirardini A (2009) A review of terms and definitions to categorise estuaries, lagoons and associated environments. Mar Freshw Res 60:497–509

    Article  Google Scholar 

  • Ubertini M, Lefebvre S, Gangnery A et al (2012) Spatial variability of benthic-pelagic coupling in an estuary ecosystem: consequences for microphytobenthos resuspension phenomenon. PLoS One 7, e44155. doi:10.1371/journal.pone.0044155

    Article  CAS  Google Scholar 

  • Valiela I, McClelland J, Hauxwell J et al (1997) Macroalgal blooms in shallow estuaries: controls and ecophysiological and ecosystem consequence. Limnol Oceanogr 42:1105–1118

    Article  Google Scholar 

  • Whitfield AK, Elliott M (2011) Ecosystem and biotic classifications of estuaries and coasts. In: Wolanski E, McLusky DS (eds) Treatise on estuaries and coasts. Elsevier, Amsterdam, pp 99–124

    Chapter  Google Scholar 

  • Whitfield AK, Elliot M, Basset A et al (2012) Paradigms in estuarine ecology—a review of the Remane diagram with a suggested revised model for estuaries. Estuar Coast Shelf Sci 97:78–90

    Article  Google Scholar 

  • Young GC, Potter IC, Hyndes GA, de Lestang S (1997) The ichthyofauna of an intermittently open estuary: implications of bar breaching and low salinities on faunal composition. Estuar Coast Shelf Sci 45:53–68

    Article  Google Scholar 

Download references

Acknowledgements

We wish to thank all members of the Estuary and Catchments Science Team at the Office of Environment and Heritage for their participation in the research that has formed the foundations of this Chapter. The research has been supported by funding from Office of Environment and Heritage, Great Lakes Council, Wyong Council, Lake Macquarie Council, Australian Government (Caring for Our Country, Coastal Catchments Initiative) and OEH Estuary Management Fund. The manuscript has been improved by comments from Kaarina Weckström, Greg Skilbeck and two anonymous reviewers. Thanks to Kathryn Taffs for initially seeking our input into this subject.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Peter Scanes .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2017 Springer Science+Business Media B.V.

About this chapter

Cite this chapter

Scanes, P., Ferguson, A., Potts, J. (2017). Estuary Form and Function: Implications for Palaeoecological Studies. In: Weckström, K., Saunders, K., Gell, P., Skilbeck, C. (eds) Applications of Paleoenvironmental Techniques in Estuarine Studies. Developments in Paleoenvironmental Research, vol 20. Springer, Dordrecht. https://doi.org/10.1007/978-94-024-0990-1_2

Download citation

Publish with us

Policies and ethics