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In-cell RT-PCR in a single, detached plant cell

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Abstract

mRNA in situ hybridization locates specific transcripts in a tissue. PCR is ideal for detecting infrequently occurring nucleic acid sequences because of its specificity, sensitivity, simplicity, and cost effectiveness. Recently, RT-PCR in situ hybridization has been used to locate low abundance messages in a cross-sectioned tissue [6]. ln-cell PCR from mRNA has been used to detect specific transcripts in mouse and human cells [2]. The advantage of in-cell RT-PCR (reverse transcription-polymerase chain reaction) over in situ hybridization is that low abundance messages can be detected in a single detached cell. Also, because RT-PCR is performed in an intact cell, there is much less chance for detection of contaminating nucleic acid. This procedure is applicable to all single cell preparations, such as cell suspension cultures, protoplasts, and detached root border cells.

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Abbreviations

DIG:

digoxigenin

DEPC:

diethylpyrocarbonate

DDW:

distilled deionized water

NBT:

nitroblue tetrazolium

PCR:

polymerase chain reaction

RT-PCR:

reverse transcription-polymerase chain reaction

SB:

staining buffer

SSB:

stain-stop buffer

X-PHOS:

5-bromo-4-chloro-3-indoyl phosphate

References

  1. Brigham, L.A., H.-H. Woo and M.C. Hawes 1995. Root border cells as tools in plant cell studies. In: Methods in Cell Biology, pp. 377–387, D.W. Galbraith, H.J. Bohnert and D.P. Bourque, eds. Academic Press, USA.

    Google Scholar 

  2. Embleton, M.J., G. Gorochov, P.T. Jones and G. Winter 1992. In-cell PCR from mRNA: amplifying and linking the rearranged immunoglobulin heavy and light chain V-genes within single cells. Nucl. Acids Res. 20, 15: 3831–3837.

    Article  Google Scholar 

  3. O’Leary, J.J., G. Browne, R.J. Landers, M. Crowley, I. Bailey Healy, J.T. Street, A.M. Pollock, J. Murphy, M.J. Johnson, F.A. Lewis, O. Mohamdee, C. Cullinane and C.T. Doyle 1994. The importance of fixation procedures on DNA template and its suitability for solution-phase polymerase chain reaction and PCR in situ hybridization. Histochemical Journal. 26, 337–346.

    Article  Google Scholar 

  4. Raikhel N.V., S.Y. Bednarek and D.R. Lerner 1989. In situ RNA hybridization in plant tissues. B9, 1–32 in Plant Molecular Biology Manual. Kluwer Academic Publishers, Dordrecht, Belgium.

    Google Scholar 

  5. Salstrom J.F., I. Zehbe, M. Alemi and E. Wilander 1993. Pitfalls of in situ polymerase chain reaction (PCR) using direct incorporation of labelled nucleotides. Anticancer Research. 13, 1153.

    Google Scholar 

  6. Staecker H., M. Cammer, R. Rubenstein and T.R. Van De Water 1994. A procedure for RT-PCR amplification of mRNAs on histological specimens. BioTechniques. 16,1, 76–80.

    Google Scholar 

  7. Van Belle H 1972. Kinetics and inhibition of alkaline phosphatase from canine tissues. Biochim. Biophys. Acta. 289, 158–168.

    Google Scholar 

  8. Woo, H.-H., L.A. Brigham and M.C. Hawes 1995. Molecular cloning and expression of H1 histone and an H1 histone like sequences in root tips of pea (Pisum sativum L.). Plant Molecular Biology. 28,6, 1143–1148.

    Article  Google Scholar 

  9. Ziegler, R., D.L. Engler and N.T. Davis 1995. Biotin-containing proteins of the insect nervous system, a potential source of interference with immunocytochemical localization procedures. Insect Biochem. Molecu. Biol. 25,5, 569–574.

    Article  Google Scholar 

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© 1997 Kluwer Academic Publishers

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Woo, HH. (1997). In-cell RT-PCR in a single, detached plant cell. In: Gelvin, S.B., Schilperoort, R.A. (eds) Plant Molecular Biology Manual. Springer, Dordrecht. https://doi.org/10.1007/978-94-011-5400-0_5

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  • DOI: https://doi.org/10.1007/978-94-011-5400-0_5

  • Publisher Name: Springer, Dordrecht

  • Print ISBN: 978-0-7923-4205-2

  • Online ISBN: 978-94-011-5400-0

  • eBook Packages: Springer Book Archive

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