Skip to main content

Construction and application of a YAC library

  • Chapter
  • 289 Accesses

Abstract

As the desire to map genomes has grown over the last decade, the technical means have grown along with it. With the development of different cloning vectors, pulsed-field gel electrophoresis (PFGE) [15,16,19,46 and van Daelen and Zabel, this book], jumping libraries [21,39] and the polymerase chain reaction (PCR) [43], projects on genome mapping are possible for almost all species. The mapping strategies may be broadly grouped into two general classes, genetic and physical mapping. These two approaches yield qualitatively different information, e.g., genetic maps allow one to get an overall view of an entire chromosome with low resolution of details, whereas physical maps provide very high resolution in local regions of a chromosome without necessarily linking distant regions. The two mapping approaches therefore complement each other, and genome mapping projects including both strategies have good possibilities of being successful.

This is a preview of subscription content, log in via an institution.

Buying options

Chapter
USD   29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD   39.99
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD   54.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Learn about institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  1. Albertsen HM, Le Paslier D, Abderrahim H, Cann H, Dausset J, Cohen D (1989) Improved control of partial DNA restriction enzyme digest in agarose using limiting concentrations of Mg+ +. Nucleic Acids Res 17: 808.

    Article  PubMed  CAS  Google Scholar 

  2. Albertsen HM, Abderrahim H, Cann H, Dausset J, Le Paslier D, Cohen D (1990) Construction and characterization of a yeast artificial chromosome library containing seven haploid human genome equivalents. Proc Natl Acad Sci USA 87: 4256–4260.

    Article  PubMed  CAS  Google Scholar 

  3. Anand R, Villasante A, Tyler-Smith C (1989) Construction of yeast artificial chromosome libraries with large inserts using fractionation by pulsed-field gel electrophoresis. Nucleic Acids Res 17: 3425–3433.

    Article  PubMed  CAS  Google Scholar 

  4. Anand R, Riley JH, Smith JC, Markharn AF (1990) A 3.5 genome equivalent multi access YAC library: construction, characterisation, screening and storage. Nucleic Acids Res. 18: 1951–1955.

    Article  PubMed  CAS  Google Scholar 

  5. Bates GP, MacDonald ME, Baxendale S, Sedlacek Z, Youngman S, Romano D, Whaley WL, Allitto BA, Poustka A, Gusella JF, Lehrach H (1990) A yeast artificial chromosome telomere clone spanning a possible location of the Huntington Disease gene. Am J Hum Genet 46: 762–775.

    PubMed  CAS  Google Scholar 

  6. Beckmann J, Soller M (1986) Restriction fragment length polymorphisms in plant genetic improvement. Oxford Surv Plant Mol Biol Cell Biol 3: 196–250.

    CAS  Google Scholar 

  7. Bellis M, Pages M, Roizes GA (1987) A simple and rapid method for preparing yeast chromosomes for pulsed field gel electrophoresis. Nucleic Acids Res 15: 6749.

    Article  PubMed  CAS  Google Scholar 

  8. Botstein D, White RL, Skolnick M, Davis RW (1980) Construction of a genetic linkage map in man using restriction fragment length polymorphisms. Am J Hum Genet 32: 314–331.

    PubMed  CAS  Google Scholar 

  9. Breukel C, Wijnen J, Tops C, van der Klift H, Dauwerse H, Meera Khan P (1990) Vector-Alu PCR: a rapid step in mapping cosmids and YACs. Nucleic Acids Res 18: 3097.

    Article  PubMed  CAS  Google Scholar 

  10. Brown WRA (1989) Molecular cloning of human telomeres in yeast. Nature 338: 774–776.

    Article  PubMed  CAS  Google Scholar 

  11. Brownstein BH, Silverman GA, Little RD, Burke DT, Korsmeyer SJ, Schlessinger D, Olson MV (1989) Isolation of single-copy human genes from a library of yeast artificial-chromosome clones. Science 244: 1348–1351.

    Article  PubMed  CAS  Google Scholar 

  12. Bucan M, Yang-Feng T, Colbert-Poley AM, Wolgemuth D, Guenet JL, Francke U, Lehrach H (1986) Genetic and cytogenetic localisation of the homeobox containing genes of mouse chromosome 6. EMBO J 5: 287–290.

    Google Scholar 

  13. Burgers PMJ, Percival KJ (1987) Transformation of yeast spheroplasts without cell fusion. Anal Biochem 163: 391–397.

    Article  PubMed  CAS  Google Scholar 

  14. Burke DT, Carle GF, Olson MV (1987) Cloning of large segments of exogenous DNA into yeast by means of artificial chromosome vectors. Science 236: 806–812.

    Article  PubMed  CAS  Google Scholar 

  15. Carle GF, Olson MV (1984) Separation of chromosomal DNA molecules from yeast by orthogonal-field alternation gel electrophoresis. Nucleic Acids Res 12: 5647–5664.

    Article  PubMed  CAS  Google Scholar 

  16. Carle GF, Frank M, Olson MV (1986) Electrophoretic separations of large DNA molecules by periodic inversion of the electric field. Science 232: 65–68.

    Article  PubMed  CAS  Google Scholar 

  17. Cheng J-F, Smith CL, Cantor CR (1989) Isolation and characterization of a human telomere. Nucleic Acids Res 17: 6109–6127.

    Article  PubMed  CAS  Google Scholar 

  18. Cheung WY, Gale MD (1990) The isolation of high molecular weight DNA from wheat, barley and rye for analysis by pulsed-field gel electrophoresis. Plant Mol Biol 14: 881–888.

    Article  PubMed  CAS  Google Scholar 

  19. Chu G, Vollrath D, Davis RW (1986) Separation of large DNA molecules by contourclamped homogenous electric fields. Science 234: 1582–1585.

    Article  PubMed  CAS  Google Scholar 

  20. Clarke L, Carbon J (1976) A colony bank containing synthetic Col E1 hybrid plasmids representative of the entire E. coli genome. Cell 9: 91.

    Google Scholar 

  21. Collins FS, Weissman SM (1984) Directional cloning of DNA fragments at a large distance from an initial probe: A circularization method. Proc Natl Acad Sci USA 81: 6812–6816.

    Article  PubMed  CAS  Google Scholar 

  22. Coulson A, Waterson R, Kiff J, Sulston J, Kohara Y (1988) Genome linking with yeast artificial chromosomes. Nature 335: 184–186.

    Article  PubMed  CAS  Google Scholar 

  23. Cross SH, Allshire RC, McKay SJ, McGill NI, Cooke HJ (1989) Cloning of human telomeres by complementation in yeast. Nature 338: 771–774.

    Article  PubMed  CAS  Google Scholar 

  24. Feil R, Palmieri G, d’Urso M, Heilig R, Oberle I, Mandel JL (1990) Physical and genetic mapping of polymorphic loci in Xq28 (DXS 15, DXS52, and DXS 134): Analysis of a cosmid clone and a yeast artificial chromosome. Am J Hum Genet 46: 720–728.

    PubMed  CAS  Google Scholar 

  25. Garza D, Ajioka JW, Burke DT, Hartl DL (1989) Mapping the Drosophila genome with yeast artificial chromosomes. Science 246: 641–646.

    Article  PubMed  CAS  Google Scholar 

  26. Green ED, Olson MV (1990) Systematic screening of yeast artificial-chromosome libraries by use of the polymerase chain reaction. Proc Natl Acad Sci USA 87: 1213–1217.

    Article  PubMed  CAS  Google Scholar 

  27. Guzman P, Ecker JR (1988) Development of large DNA methods for plants: molecular cloning of large segments of Arabidopsis and carrot DNA into yeast. Nucleic Acids Res 16: 11091–11105.

    Article  PubMed  CAS  Google Scholar 

  28. Heard E, Davies B, Feo S, Fried M (1989) An improved method for the screening of YAC libraries. Nucleic Acids Res 17: 5861.

    Article  PubMed  CAS  Google Scholar 

  29. Kuspa A, Vollrath D, Cheng Y, Kaiser D (1989) Physical mapping of the Myxococcus xanthus genome by random cloning in yeast artificial chromosome. Proc Natl Acad Sci USA 86: 8917–8921.

    Article  PubMed  CAS  Google Scholar 

  30. Labella T, Schlessinger D (1989) Complete human rDNA repeat units isolated in yeast artificial chromosomes. Genomics 5: 752–760.

    Article  PubMed  CAS  Google Scholar 

  31. Lai E, Cantrell C (1989) Rapid colony screening of YAC libraries by using alginate as matrix support. Nucleic Acids Res 17: 8008.

    Article  PubMed  CAS  Google Scholar 

  32. Ledbetter SA, Nelson DL, Warren ST, Ledbetter DH (1990) Rapid isolation of DNA probes within specific chromosome regions by interspersed repetitive sequence (IRS) PCR. Genomics 6: 475–481.

    Article  PubMed  CAS  Google Scholar 

  33. Little RD, Porta G, Carle GF, Schlessinger D, D’Urso M (1989) Yeast artificial chromosomes with 200-to 800-kilobase inserts of human DNA containing HLA, V K, 5 S, and Xq24-Xq28 sequences. Proc Natl Acad Sci USA 86: 1598–1602.

    Article  PubMed  CAS  Google Scholar 

  34. Murray AW, Schultes NP, Szostak JW (1986) Chromosome length controls mitotic chromosome segregation in yeast. Cell 45: 529–536.

    Article  PubMed  CAS  Google Scholar 

  35. Murray AW, Szostak JW (1983) Construction of artificial chromosomes in yeast. Nature 305: 189–193.

    Article  PubMed  CAS  Google Scholar 

  36. Nelson DL, Ledbetter SA, Corbo L, Victoria MF, Ramirez-Solis R, Webster TD, Ledbetter DH, Caskey CT (1989) Alu PCR: a method for rapid isolation of human-specific sequences from complex DNA sources. Proc Natl Acad Sci USA 86: 6686–6690.

    Article  PubMed  CAS  Google Scholar 

  37. Neil DL, Villasante A, Fisher RB, Vetrie D, Cox B, Tyler-Smith C (1990) Structural instability of human tandemly repeated DNA sequences cloned in yeast artificial chromosome vectors. Nucleic Acids Res 18: 1421–1428.

    Article  PubMed  CAS  Google Scholar 

  38. Pavan WJ, Hieter P, Reeves RH (1990) Generation of deletion derivatives by targeted transformation of human-derived yeast artificial chromosomes. Proc Natl Acad Sci USA 87: 1300–1304.

    Article  PubMed  CAS  Google Scholar 

  39. Poustka A, Pohl TM, Barlow DP, Frischauf A-M, Lehrach H (1987) Construction and use of human chromosome jumping libraries from Not I-digested DNA. Nature 325: 353–355.

    Article  PubMed  CAS  Google Scholar 

  40. Ochman H, Gerler AS, Hartl DL (1988) Genetic applications of an inverse polymerase chain reaction. Genetics 120: 621–623.

    PubMed  CAS  Google Scholar 

  41. Riethman HC, Moyzis RK, Meyne J, Burke DT, Olson MV (1989) Cloning human telomeric DNA fragments into Saccharomyces cerevisiae using a yeast-artificial-chromosome vector. Proc Natl Acad Sci USA 86: 6240–6244.

    Article  PubMed  CAS  Google Scholar 

  42. Riley J, Butler R, Ogilvie G, Jenner D, Powell S, Anand R, Smith JC, Markharn AF (1990) A novel, rapid method for the isolation of terminal sequences from yeast artificial chromosome (YAC) clones. Nucleic Acids Res 18: 2887–2890.

    Article  PubMed  CAS  Google Scholar 

  43. Saiki RK, Scharf S, Faloona F, Mullis KB, Horn GT, Erlich HA, Arnheim N (1985) Enzymatic amplification of ß-globin genomic sequences and restriction site analysis for diagnosis of sickle cell anemia. Science 230: 1350–1354.

    Article  PubMed  CAS  Google Scholar 

  44. Sambrook J, Fritsch EF, Maniatis T (1989) Molecular Cloning: A Laboratory Manual (2nd ed.) Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press.

    Google Scholar 

  45. Schwartz DC, Cantor CR (1984) Separation of yeast chromosome-sized DNAs by pulsed field gradient gel electrophoresis. Cell 37: 67–75.

    Article  PubMed  CAS  Google Scholar 

  46. Sheeman C, Weiss AS (1990) Yeast artificial chromosomes: rapid extraction for high resolution analysis. Nucleic Acids Res 18: 2193.

    Article  Google Scholar 

  47. Sherman F, Fink GR, Hicks JB (1986) Methods in Yeast Genetics. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory.

    Google Scholar 

  48. Silverman GA, Ye RD, Pollock KM, Sadler JE, Korsmeyer SD (1989) Use of yeast artificial chromosome clones for mapping and walking within human chromosome segment 18q21.3. Proc Natl Acad Sci USA 86: 7485–7489.

    Article  PubMed  CAS  Google Scholar 

  49. Traver CN, Klapholz S, Hyman RW, Davis RW (1989) Rapid screening of a human genomic library in yeast artificial chromosomes for single-copy sequences. Proc Natl Acad Sci USA 86: 5898–5902.

    Article  PubMed  CAS  Google Scholar 

  50. Wada M, Little RD, Abidi F, Porta G, Labella T, Cooper T, Della Valle G, D’Urso M, Schlessinger D (1990) Human Xq24-Xq28: Approaches to mapping with yeast artificial chromosomes. Am J Hum Genet 46: 95–105.

    PubMed  CAS  Google Scholar 

  51. Ward ER, Jen GC (1990) Isolation of single-copy-sequence clones from a yeast artificial chromosome library of randomly-sheared Arabidopsis thaliana DNA. Plant Mol Biol 14: 561–568.

    Article  PubMed  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 1992 Springer Science+Business Media Dordrecht

About this chapter

Cite this chapter

Albertsen, H.M., Abderrahim, H., Cohen, D., Le Paslier, D. (1992). Construction and application of a YAC library. In: Beckmann, J.S., Osborn, T.C. (eds) Plant Genomes: Methods for Genetic and Physical Mapping. Springer, Dordrecht. https://doi.org/10.1007/978-94-011-2442-3_7

Download citation

  • DOI: https://doi.org/10.1007/978-94-011-2442-3_7

  • Publisher Name: Springer, Dordrecht

  • Print ISBN: 978-94-010-5077-7

  • Online ISBN: 978-94-011-2442-3

  • eBook Packages: Springer Book Archive

Publish with us

Policies and ethics