Skip to main content

Degradation and modification of nucleic acids

  • Chapter
Book cover The Biochemistry of the Nucleic Acids

Abstract

Enzymes which catalyse the breakdown of nucleic acids by hydrolysis of phosphodiester bonds have been found in almost all biological systems [1, 2]. Some, the ribonucleases, are quite specific for RNA, others, the deoxyribonucleases, act only on DNA, whereas a third group of non-specific Nucleases is active against either nucleic acid. The phosphorylases, polynucleotide Phosphorylase and pyrophosphorylase, are also capable of depolymerizing RNA, but their degradative role in vivo is uncertain. The phosphomonoesterases act on polynucleotides or oligonucleotides with a terminal phosphate group or on a mononucleotide to liberate inorganic phosphate. Their substrates will often be the products of nuclease action.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 169.00
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 249.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  1. Laskowski, M. (1967) Adv. Enzymol., 29, 165.

    PubMed  CAS  Google Scholar 

  2. Barnard, E. A. (1965) Annu. Rev. Biochem., 38, 677.

    Google Scholar 

  3. Grossman, L. and Moldave, K. (1980) Methods Enzymol., 65.

    Google Scholar 

  4. Laskowski, M. (1971) The Enzymes (3rd edn) (ed. P. D. Boyer), Academic Press, New York, vol. 4, p. 289.

    Google Scholar 

  5. Dingwall, C., Lomonossoff, G. P. and Laskey, R. A. (1981) Nucleic Acids Res., 9, 2659.

    PubMed  CAS  Google Scholar 

  6. Horz, W. and Altenberger, W. (1981) Nucleic Acids Res., 9, 2643.

    PubMed  CAS  Google Scholar 

  7. Cotton, F. A. and Hazen, E. E. (1971) The Enzymes (3rd edn) (ed. P. D. Boyer), Academic Press, New York, vol. 4, p. 153.

    Google Scholar 

  8. Anfinsen, C. B., Cuatrecasas, P. and Taniuchi, H. (1971) The Enzymes (3rd edn) (ed. P. D. Boyer), Academic Press, New York, vol. 4, p. 177.

    Google Scholar 

  9. Linn, S. and Lehman, I. R. (1965) J. Biol. Chem., 240, 1287, 1294.

    PubMed  CAS  Google Scholar 

  10. Shishido, K. and Ando, T. (1982) in Nucleases, Cold Spring Harbor Monograph, 14, p. 155.

    Google Scholar 

  11. Shishido, K. and Ando, T. (1972) Biochim. Biophys. Acta, 287, 477.

    PubMed  CAS  Google Scholar 

  12. Fujimoto, M., Kuninaka, A. and Yoshina, H. (1974) Agric. Biol. Chem., 38, 785.

    CAS  Google Scholar 

  13. Sung, S-C. and Laskowski, M. (1962) J. Biol. Chem., 237, 506.

    PubMed  CAS  Google Scholar 

  14. Gray, H. B., Winston, T. P., Hodnett, J. L., Legevski, R. J., Nees, D. W., Wel, C-F. and Robberson, D. L. (1981) in Gene Amplification and Analysis, Elsevier/North-Holland, New York, vol. 2, p. 169.

    Google Scholar 

  15. Laskowski, M. (1971) in The Enzymes (3rd edn) (ed. P. D. Boyer), Academic Press, New York, vol. 4, p. 313.

    Google Scholar 

  16. Bernardi, R. and Bernardi, G. (1971) in The Enzymes (3rd edn) (ed. P. D. Boyer), Academic Press, New York, vol. 4, p. 319.

    Google Scholar 

  17. Wei, C-E., Alianell, G. A., Beneen, G. H. and Gray, H. B. (1983) J. Biol. Chem., 258, 13506.

    PubMed  CAS  Google Scholar 

  18. Richards, F. M. and Wyckoff, H. W. (1971) in The Enzymes (3rd edn) (ed. P. D. Boyer), Academic Press, New York, vol. 4, p. 647.

    Google Scholar 

  19. Blackburn, P. and Moore, S. (1982) in The Enzymes (3rd edn) (ed. P. D. Boyer), Academic Press, New York, vol. 15, p. 317.

    Google Scholar 

  20. Jones, W. (1920) Am. J. Physiol., 52, 203.

    CAS  Google Scholar 

  21. Enzyme Nomenclature (1984) Recommendations of the International Union of Biochemistry, Academic Press, London.

    Google Scholar 

  22. Dubos, R. J. and Thompson, R. H. S. (1938) J. Biol. Chem., 154, 501.

    Google Scholar 

  23. Kunitz, M. (1940) J. Gen. Physiol., 14, 15.

    Google Scholar 

  24. McDonald, M. R. (1955) Methods Enzymol., 2, 427.

    CAS  Google Scholar 

  25. Smyth, D. G., Stein, W. H. and Moore, S. (1963) J. Biol. Chem., 238, 227.

    PubMed  CAS  Google Scholar 

  26. Beintema, J-J. and Lenstra, J. A. (1982) in Macromolecular Sequences in Systematics and Evolutionary Biology (ed. M. Goodman), Plenum Press, New York.

    Google Scholar 

  27. Kartha, G., Bello, J. and Harker, D. (1967) Nature (London), 213, 862.

    CAS  Google Scholar 

  28. Wyckoff, H. W., Hardman, K. D., Allewell, N. M., Inagami, T., Johnson, L. N. and Richards, F. M. (1967) J. Biol. Chem., 242, 3984.

    PubMed  CAS  Google Scholar 

  29. Carlisle, C. H., Palmer, R. A., Mazumdar, S. K., Gorinsky, B. A. and Yeates, D. G. R. (1974)J. Mol. Biol.,85, 1.

    PubMed  Google Scholar 

  30. Timchenko, A. A., Ptitsyn, O. B., Dolgikh, D. A. and Eedorov, B. A. (1978) FEBS Lett.., 88, 105.

    PubMed  Google Scholar 

  31. Gutte, B. and Merrifield, R. B. (1969) J. Am. Chem. Soc., 91, 501.

    PubMed  CAS  Google Scholar 

  32. Hirschmann, R., Nutt, R. F., Veber, D. F., Vitali, R. A., Varga, S. L. et al. (1969) J. Am. Chem. Soc., 91, 507.

    PubMed  CAS  Google Scholar 

  33. Bernd, G. and Merrifield, R. B. (1971) J. Biol. Chem., 246, 1922.

    Google Scholar 

  34. Rubsamen, H., Khandker, R. and Witzel, H. (1974) Hoppe Seyler’s Z. Physiol. Chem., 355, 687.

    PubMed  CAS  Google Scholar 

  35. Walker, E. J., Raiston, G. B. and Darvey, I. G. (1975) Biochem. J., 147, 425.

    PubMed  CAS  Google Scholar 

  36. Walker, E. J., Raiston, G. B. and Darvey, I. G. (1978) Biochem. J., 173, 1.

    PubMed  CAS  Google Scholar 

  37. Usher D. A., Richardson D. I. and Eckstein, F. (1970) Nature (London), 228, 663.

    CAS  Google Scholar 

  38. Usher D. A., Erenrich, E. S. and Eckstein, F. (1972) Proc. Natl. Acad. Sci. USA, 69, 115.

    PubMed  CAS  Google Scholar 

  39. Beers, R. F. (1960) J. Biol. Chem., 235, 2393.

    PubMed  CAS  Google Scholar 

  40. Kunitz, M. (1946) J. Biol. Chem., 164, 563.

    PubMed  CAS  Google Scholar 

  41. Anfinsen, C. B., Redfield, R. R., Choate, W. L., Page, J. and Carroll, W. R. (1954) J. Biol. Chem., 207, 201.

    PubMed  CAS  Google Scholar 

  42. Crook, E. M., Mathias, A. P. and Rabin, B. R. (1960) Biochem. J., 74, 234.

    PubMed  CAS  Google Scholar 

  43. Blank, A. and Dekker, C. A. (1981) Biochemistry, 20, 2261.

    PubMed  CAS  Google Scholar 

  44. Maor, D. and Mardiney, M. R. (1979). CRC Crit. Rev. Clin. Lab. Sci., 10, 89.

    Google Scholar 

  45. D’Alessio, G., Di Donato, A., Parente, A. and Piccoli, R. (1991) Trends Biochem. Sci., 16, 104.

    PubMed  Google Scholar 

  46. Niwata, Y., Ohgi, K., Sanda, A., Takizawa, Y. and Irie, M. (1985) J. Biochem. (Tokyo), 97, 923.

    CAS  Google Scholar 

  47. Brockdorff, N. A. and Knowler, J. T. (1987) Eur. J. Biochem., 163, 89.

    PubMed  CAS  Google Scholar 

  48. Hofsteenge, J., Matthies, R. and Stone, S. R. (1989) Biochemistry, 28, 9806.

    PubMed  CAS  Google Scholar 

  49. Barton, A., Sierakowska, H. and Shugar, D. (1976) Clin. Chim. Acta, 67, 231.

    Google Scholar 

  50. Shapiro, R., Riordan, J. F. and Vallée, B. L. (1986) Biochemistry, 25, 3527.

    PubMed  CAS  Google Scholar 

  51. Roth, J. S. (1967) Methods Cancer Res., 3, 151.

    Google Scholar 

  52. Blackburn, P. (1979) J. Biol. Chem., 254, 12484.

    PubMed  CAS  Google Scholar 

  53. Lee, F. S., Fox, E. A., Zhou, H-M., Strydom, D. J. and Vallee, B. L. (1988) Biochemistry, 27, 8545.

    PubMed  CAS  Google Scholar 

  54. McGregor, C. W., Adams, A. and Knowler, J. T. (1981) J. Steroid Biochem., 14, 415.

    PubMed  CAS  Google Scholar 

  55. Hofsteenge, J., Kieffer, B., Matthies, R., Hemmings, B. A. and Stone, S. R. (1988) Biochemistry, 27, 8537.

    PubMed  CAS  Google Scholar 

  56. Blackburn, P. and Moore, S. (1982) in The Enzymes (3rd edn) (ed. P. D. Boyer), Academic Press, New York, vol. 15, p. 317.

    Google Scholar 

  57. Ami, R., Heinemann, U., Tokuoka, R. and Saenger, W. (1988) J. Biol. Chem., 263, 15358.

    Google Scholar 

  58. Uchida, T. and Egami, F. (1967) J. Biochem. (Tokyo), 61, 44.

    CAS  Google Scholar 

  59. Kenney, W. C. and Dekker, C. A. (1971) Biochemistry, 10, 4962.

    PubMed  CAS  Google Scholar 

  60. Kasai, K., Uchida, T., Egami, F., Yoshida, K. and Nomoto, M. (1969) J. Biochem. (Tokyo), 66, 389.

    CAS  Google Scholar 

  61. Shen, V. and Schlessinger, D. (1982) in The Enzymes (ed. P. D. Boyer), Academic Press, New York, vol. 15, p. 501.

    Google Scholar 

  62. Neu, H. C. and Heppel, L. A. (1964) J. Biol. Chem., 239, 3893.

    PubMed  CAS  Google Scholar 

  63. King, T. C., Sirdeskmukh, R. and Schlessinger, D. (1986) Microbiol. Rev., 50, 428.

    PubMed  CAS  Google Scholar 

  64. Gesteland, R. (1966) J. Mol. Biol., 16, 67.

    PubMed  CAS  Google Scholar 

  65. Cohen, L. and Kaplan, R. (1977) J. Bacteriol., 129, 651.

    PubMed  CAS  Google Scholar 

  66. Meador, J., Cannon, B., Cannistraro, V. J. and Kennell, D. (1990) Eur. J. Biochem., 187, 549,

    PubMed  Google Scholar 

  67. Minato, S. and Hirai, A. (1979) J. Biochem. (Tokyo), 85, 327.

    CAS  Google Scholar 

  68. Rushizky, G. W., Mozejko, J. H., Rogerson, D. and Sober, H. A. (1970) Biochemistry, 9, 4966.

    PubMed  CAS  Google Scholar 

  69. Randerath, K., Gupta, R. C. and Randerath, E. (1980) Methods Enzymol., 65, Part 1, 638.

    PubMed  Google Scholar 

  70. Yasuda, T. and Inoue, Y. (1982) Biochemistry, 21, 364.

    PubMed  CAS  Google Scholar 

  71. Clemens, M. J. and McNurlan, M. A. (1985) Biochem. J., 226, 345.

    PubMed  CAS  Google Scholar 

  72. Jacobsen, H., Krause, D., Friedman, R. M. and Silverman, R. H. (1983) Proc. Natl Acad. Sci. USA, 80, 4954.

    PubMed  CAS  Google Scholar 

  73. Clemens, M. J. and Williams, B. R. G. (1978) Cell, 13, 565.

    PubMed  CAS  Google Scholar 

  74. Wrescher, D. H., James, T. C., Silverman, R. H. and Kerr, I. H. (1981) Nucleic Acids Res., 9, 1511.

    Google Scholar 

  75. Suhadolnik, R. J., Lee, C., Kariko, K. and Li, S. W. (1987) Biochemistry, 26, 7143.

    PubMed  CAS  Google Scholar 

  76. Torrence, P. F., Brozda, D., Alster, D., Charubala, R. and Pfleiderer, W. (1988) J. Biol. Chem., 263, 1131.

    PubMed  CAS  Google Scholar 

  77. Silverman, R. H., Jung, D. D., Nolan-Sorden, N. L., Dieffenbach, C. W., SenGupta, D. N. et al.(1988) J. Biol. Chem., 263, 7336.

    PubMed  Google Scholar 

  78. RajBhandary, U. L., Lockard, R. E. and Wurst Reiliy, R. M. (1982) in Nucleases (eds. S. M. Linn and R. J. Roberts), Cold Spring Harbor Laboratory, New York, p. 275.

    Google Scholar 

  79. Tabor, M. W., Leake, B. H. and MacGee, J. (1976) Fed. Proc. Abs., 35, 298.

    Google Scholar 

  80. Lockard, R. E., Alzner-Deweerd, B., Heckman, J. E., MacGee, J., Tabor, M. W. et al.(1978) Nucleic Acids Res., 5, 37.

    PubMed  Google Scholar 

  81. Pilly, D., Niemeyer, A., Schmidt, M. and Bargetzi, P. (1978) J. Biol. Chem., 253, 437.

    PubMed  CAS  Google Scholar 

  82. Donis-Keller, H. (1980) Nucleic Acids Res., 8, 3133.

    PubMed  CAS  Google Scholar 

  83. Levy, C. C. and Karpetsky, T. P. (1980) J. Biol. Chem., 255, 2153.

    PubMed  CAS  Google Scholar 

  84. Adams, J. M., Cory, S. and Spahr, P. F. (1972) Eur. J. Biochem., 29, 469.

    PubMed  CAS  Google Scholar 

  85. Bellemore, G., Jordan, B. R. and Monier, R. (1972) J. Mol Biol.., 71, 307.

    PubMed  Google Scholar 

  86. Thomas, K. R. and Olivera, B. M. (1978) J. Biol. Chem., 253, 424.

    PubMed  CAS  Google Scholar 

  87. Gupta, R. S., Kasai, T. and Schlessinger, D. (1977) J. Biol. Chem., 252, 8945.

    PubMed  CAS  Google Scholar 

  88. Cudny, H. and Deutscher, M. P. (1980) Proc. Natl. Acad. Sci. USA, 77, 83.

    Google Scholar 

  89. Donovan, W. P. and Kushner, S. R. (1986) Proc. Nad. Acad. Sci. USA, 82, 6427.

    Google Scholar 

  90. Stein, H. and Hausen, P. (1970) Cold Spring Harbor Symp. Quant. Biol., 35, 709.

    CAS  Google Scholar 

  91. Crouch, R. J. and Dirksen, M.-L. (1982) in Nucleases (eds S. M. Linn and R. J. Roberts), Cold Spring Harbor Laboratory, New York, p. 211.

    Google Scholar 

  92. Yang, W., Hendrickson, W. A., Crouch, R. J. and Satow, Y. (1990) Science, 249, 1398.

    PubMed  CAS  Google Scholar 

  93. deMassey, B., Fayet, O. and Kogoma, T. (1984) J. Mol. Biol., 178, 227.

    Google Scholar 

  94. Itoh, T. and Tomizawa, J. (1980) Proc. Natl. Acad. Sci. USA, 11, 2450.

    Google Scholar 

  95. Kitani, T., Yoda, K., Ogawa, T. and’ Okazaki, J. (1985) J. Mol Biol., 184, 45.

    PubMed  CAS  Google Scholar 

  96. Krug, M. S. and Berger, S. L. (1989) Proc. Natl. Acad. Sci. USA, 86, 3539.

    PubMed  CAS  Google Scholar 

  97. Prasad, V. R. and Goff, S. P. (1989) Proc. Natl. Acad. Sci. USA, 86, 3104.

    PubMed  CAS  Google Scholar 

  98. Doolittle, R. F., Feng, D-F., Johnson, M. S. and McClure, M. A. (1989) Rev. Biol., 64, 1.

    CAS  Google Scholar 

  99. Lockard, R. and Kumar, A. (1981) Nucleic Acids Res., 9, 5125.

    PubMed  CAS  Google Scholar 

  100. Grinnell, B. W. and Wagner, R. R. (1984) Cell, 36, 533.

    PubMed  CAS  Google Scholar 

  101. Auron, P. E., Weber, L. D. and Rich, A. (1982) Biochemistry, 21, 4700.

    PubMed  CAS  Google Scholar 

  102. White, M. D., Bauer, S. and Lapidot, Y. (1977) Nucleic Acids Res., 4, 3029.

    PubMed  CAS  Google Scholar 

  103. White, M. D., Rapoport, S. and Lapidot, Y. (1977) Biochem. Biophys. Res. Commun., 11, 1084.

    Google Scholar 

  104. Pollard, D. R. and Nagyvary, J. (1973) Biochemistry, 12, 1063.

    PubMed  CAS  Google Scholar 

  105. Brownhill, T. J., Jones, A. S. and Stacey, M. (1961) Biochem. J., 13, 434.

    Google Scholar 

  106. Stanley, W. M. and Bock, R. M. (1965) Biochemistry, 4, 1302.

    PubMed  CAS  Google Scholar 

  107. Mora P. T. (1962) J. Biol Chem., 237, 3210.

    CAS  Google Scholar 

  108. Cheng T., Polmar S. K. and Kazazian, H. H. (1974) J. Biol. Chem., 249, 1781.

    PubMed  CAS  Google Scholar 

  109. McKnight G-S. and Schimke R. T. (1974) Proc. Natl. Acad. Sci. USA, 71, 4327.

    PubMed  CAS  Google Scholar 

  110. Chirgwin, J. M., Przybyla, A. E., MacDonald, R. J. and Rutter, W. J. (1979) Biochemistry, 18, 5294.

    PubMed  CAS  Google Scholar 

  111. Girard, M. (1967) Methods Enzymol., 12a, 581.

    Google Scholar 

  112. Berger, S. L. and Birkenmeier, C. S. (1979) Biochemistry, 81, 5143.

    Google Scholar 

  113. Scheel, G. and Blackburn, P. (1979) Proc. Natl. Acad. Sci. USA, 76, 4898.

    Google Scholar 

  114. de Martynoff, G., Pays, E. and Vassart, G. (1980) Biochem. Biophys. Res. Commun., 93, 645.

    PubMed  Google Scholar 

  115. Solymosy, F., Fedorcsák, L, Gulyás, A., Farkas, G. L. and Ehrenberg, L. (1968) Eur. J. Biochem., 5, 520.

    PubMed  CAS  Google Scholar 

  116. Wiener, S. L., Wiener, R., Urivetzky, M. and Meilman, E. (1972) Biochim. Biophys. Acta, 259, 378.

    PubMed  CAS  Google Scholar 

  117. Ehrenberg, L., Fedorcsák, I. and Solyrnosy, F. (1976) Prog. Nucleic Acid Res. Mol. Biol., 16, 189.

    PubMed  CAS  Google Scholar 

  118. Grunberg-Manago, M., Ortiz, P. J. and Ochoa, S. (1956) Biochim. Biophys. Acta, 20, 269.

    PubMed  CAS  Google Scholar 

  119. Grunberg-Manago, M. (1963) Prog. Nucleic Acid Res., 1,93.

    CAS  Google Scholar 

  120. Littauer, U. Z. and Soreq, H. (1982) in The Enzymes (ed. P. D. Boyer), Academic Press, New York, vol. 15, p. 517.

    Google Scholar 

  121. Portier, C. (1975) Eur. J. Biochem., 55, 573.

    PubMed  CAS  Google Scholar 

  122. Brenneman, F. N. and Singer, H. F. (1964) J. Biol Chem., 239, 893.

    PubMed  CAS  Google Scholar 

  123. Leder, P., Singer, M. F. and Brimacombe, R. L. C. (1965) Biochemistry, 4, 1561.

    PubMed  CAS  Google Scholar 

  124. Trip, E. M. and Smith, M. (1978) Nucleic Acids Res., 5, 1539.

    PubMed  CAS  Google Scholar 

  125. Soreq, H., Nudel, U., Salomon, R., Revel, M. and Littauer, U. Z. (1974) J. Mol Biol., 88, 233.

    PubMed  CAS  Google Scholar 

  126. Laskowski, M. (1982) in Nucleases (eds S. M. Linn and R. J. Roberts), Cold Spring Harbor Laboratory, New York, p. 1.

    Google Scholar 

  127. Bollum, F. J. (1965) J. Biol. Chem., 240, 2599.

    PubMed  CAS  Google Scholar 

  128. Young, E. T. and Sinsheimer. R. L. (1965) J. Biol Chem., 240, 1274.

    PubMed  CAS  Google Scholar 

  129. Bernardi, G. (1971) in The Enzymes (3rd edn) (ed. P. D. Boyer), Academic Press, New York. vol. 4, p. 271.

    Google Scholar 

  130. Bernardi, G. (1965) J. Mol Biol., 13, 603.

    PubMed  CAS  Google Scholar 

  131. Linn, S. (1982) in Nucleases (eds S. M. Linn and R. J. Roberts), Cold Spring Harbor Laboratory, New York, p. 341.

    Google Scholar 

  132. Salnikow, J. and Murphy, D. (1973) J. Biol Chem., 248, 1499.

    PubMed  CAS  Google Scholar 

  133. Abe, A. and Liao, T-H. (1983) J. Biol Chem., 258, 10283.

    PubMed  CAS  Google Scholar 

  134. Linn, S. (1982) in Nucleases (eds S. M. Linn and R. J. Roberts), Cold Spring Harbor Laboratory, New York, p. 291.

    Google Scholar 

  135. Weiss, B. (1981) in The Enzymes (ed. P. D. Boyer), Academic Press, New York, vol. 14, p. 203.

    Google Scholar 

  136. Burlingham, B. T., Doerfler, W., Pettersson, U. and Philipson, L. (1971) J. Mol Biol., 60, 45.

    PubMed  CAS  Google Scholar 

  137. Pogo, B. G. T. and Dales, S. (1969) Proc. Natl Acad. Sci. USA, 63, 820.

    PubMed  CAS  Google Scholar 

  138. Lehman, I. R. (1971) in The Enzymes (3rd edn) (ed. P. D. Boyer), Academic Press, New York, vol. 4, p. 251.

    Google Scholar 

  139. Radloff, R., Bauer, W. and Vinograd, J. (1967) Proc. Natl. Acad. Sci. USA, 57, 1514.

    PubMed  CAS  Google Scholar 

  140. Studier, F. W. (1965) J. Mol. Biol., 11, 373.

    PubMed  CAS  Google Scholar 

  141. Friedberg, E. C. and Goldthwaite, D. A. (1969) Proc. Natl Acad. Sci. USA, 62, 934.

    PubMed  CAS  Google Scholar 

  142. Yajko, D. M. and Weiss, B. (1975) Proc. Natl. Acad. Sci. USA, 72, 688.

    PubMed  CAS  Google Scholar 

  143. Ljungquist, S., Nyberg, B. and Lindahl, T. (1975) FEBS Lett., 57, 169.

    PubMed  CAS  Google Scholar 

  144. Radman, M. (1976) J. Biol. Chem., 251, 1438.

    PubMed  CAS  Google Scholar 

  145. Grossman, L., Riazuddin, S., Haseltine, W. and Lindan, K. (1978) Cold Spring Harbor Symp. Quant. Biol., 43, 947.

    Google Scholar 

  146. Demple, B. and Linn, S. (1980) Nature (London), 287, 203.

    CAS  Google Scholar 

  147. Mosbaugh, D. W. and Linn, S. (1980) J. Biol. Chem., 255, 11743.

    PubMed  CAS  Google Scholar 

  148. Lindahl, T. (1979) Prog. Nucleic Acid Res., 22, 135.

    CAS  Google Scholar 

  149. Demple, B. and Linn, S. (1982) J. Biol. Chem., 257,2848.

    PubMed  CAS  Google Scholar 

  150. Hurwitz, J., Becker, A., Gefter, M. and Gold, M. (1967) J. Cell Comp. Physiol, Suppl. 1, 70, 181.

    CAS  Google Scholar 

  151. Sadowski, P. D. and Hurwitz, J. (1969) J. Biol. Chem., 244, 6182, 6192.

    PubMed  CAS  Google Scholar 

  152. Henry, J. J. and Knippers, R. (1974) Proc. Natl. Acad. Sci. USA, 71, 1549.

    PubMed  CAS  Google Scholar 

  153. Linn, S. (1981) in The Enzymes (ed. P. D. Boyer), Academic Press, New York, vol. 14, p. 121.

    Google Scholar 

  154. Moore, S. (1981) in The Enzymes (ed. P. D. Boyer), Academic Press, New York, vol. 14, p. 281.

    Google Scholar 

  155. Chase, J. W. and Richardson, C. C. (1974) J. Biol. Chem., 249, 4545.

    PubMed  CAS  Google Scholar 

  156. Healy J. W., Stollar D. and Levine, L. (1963) Methods Enzymol., 6, 49.

    CAS  Google Scholar 

  157. Richardson, C. C., Lehman, I. R. and Kornberg, A. (1964) J. Biol. Chem., 239, 251.

    PubMed  CAS  Google Scholar 

  158. Lacks, S. and Greenberg, B. (1967) J. Biol. Chem., 242,3108.

    PubMed  CAS  Google Scholar 

  159. Okazaki, T. and Kornberg, A. (1964) J. Biol. Chem., 239, 259.

    PubMed  CAS  Google Scholar 

  160. Jorgensen, S. E. and Koerner, J. F. (1966) J. Biol. Chem., 241, 3090.

    PubMed  CAS  Google Scholar 

  161. Muskavitch, T. K. M. and Linn, S. (1981) in The Enzymes (ed. P. D. Boyer), Academic Press, New York, vol. 14, p. 233.

    Google Scholar 

  162. Kornberg, A. (1974) DNA Synthesis, Freeman, San Francisco.

    Google Scholar 

  163. Lehman, I. R. and Richardson, C. C. (1964) J. Biol Chem., 239, 233.

    PubMed  CAS  Google Scholar 

  164. Cozzarelli, N. R., Kelly, R. B. and Kornberg, A. (1969) J. Mol. Biol., 45, 513.

    PubMed  CAS  Google Scholar 

  165. Kelly, R. B., Atkinson, M. R., Huberman, J. A. and Kornberg, A. (1969) Nature (London), 224, 495.

    CAS  Google Scholar 

  166. Klenow, H. and Overgaard-Hansen, K. (1970) FEBS Lett.., 6, 25.

    PubMed  Google Scholar 

  167. Oleson, A. E. and Koerner, J. F. (1964) J. Biol. Chem., 239, 2935.

    PubMed  CAS  Google Scholar 

  168. Short, E. C. Jr and Koerner, J. F. (1969) J. Biol. Chem., 244, 1487.

    PubMed  CAS  Google Scholar 

  169. McAuslan, B. R. (1971) in Strategy of the Viral Genome, Ciba Symposium Volume, Churchill Livingstone, Edinburgh and London, p. 25.

    Google Scholar 

  170. Chase, J. W. and Richardson, C. C. (1974) J. Biol. Chem., 249, 4553.

    PubMed  CAS  Google Scholar 

  171. Chase, J. W. and Richardson, C. C. (1977) J. Bacteriol., 129, 934.

    PubMed  CAS  Google Scholar 

  172. Vales, L. D., Chase, J. W. and Richardson, C. C. (1979) J. Bacteriol., 139, 320.

    PubMed  CAS  Google Scholar 

  173. Joseph, J. W. and Kolodner, R. (1983) J. Biol Chem., 258, 10411.

    PubMed  CAS  Google Scholar 

  174. Joseph, J. W. and Kolodner, R. (1983) J. Biol. Chem.,258, 10418.

    PubMed  CAS  Google Scholar 

  175. Arber, W. (1974) Prog. Nucleic Acid Res. Mol Biol., 14, 1.

    PubMed  CAS  Google Scholar 

  176. Murray, K. and Old, R. W. (1974) Prog. Nucleic Acid Res. Mol. Biol., 14, 117.

    PubMed  CAS  Google Scholar 

  177. Boyer, H. (1971) Annu. Rev. Microbiol., 25, 153.

    PubMed  CAS  Google Scholar 

  178. Meselson, M., Yuan, R. and Heywood, J. (1972) Annu. Rev. Biochem., 41, 447.

    PubMed  CAS  Google Scholar 

  179. Nathans, D. and Smith, H. O. (1975) Annu. Rev. Biochem., 44, 273.

    PubMed  CAS  Google Scholar 

  180. Meselson M. and Yuan R. (1968) Nature (London), 217, 1110.

    CAS  Google Scholar 

  181. Bickle, T. A. (1982) p. 85 and Modrich, P. and Roberts, R. J. (1982) p. 109 in Nucleases (eds S. M. Linn and R. J. Roberts), Cold Spring Harbor Laboratory, New York.

    Google Scholar 

  182. Iida, S., Meyer, J., Bachi, B., Stahlhammer Carlamalin, M., Schrikel, S., Bickle, T. A. and Arber, W. (1983) J. Mol. Biol., 165, 1.

    PubMed  CAS  Google Scholar 

  183. Kauc, L. and Piekarowicz, A. (1978) Eur. J. Biochem., 92, 417.

    PubMed  CAS  Google Scholar 

  184. Lautenberger, J. A. and Linn, S. (1972) J. Biol. Chem., 247, 6176.

    PubMed  CAS  Google Scholar 

  185. Suri, B., Nagaraja, V. and Bickle, T. A. (1984) Curr. Top. Microbiol. Immunol.., 108, 1.

    PubMed  Google Scholar 

  186. Eskin, B. and Linn, S. (1972) J. Biol. Chem., 247, 6183.

    PubMed  CAS  Google Scholar 

  187. Hadi, S. M., Bickle, T. A. and Yuan, R. (1975) J. Biol. Chem., 250, 4159.

    PubMed  CAS  Google Scholar 

  188. Yuan, R., Bickle, T. A., Ebbers, W. and Brack, C. (1975) Nature (London), 256, 556.

    CAS  Google Scholar 

  189. Ravetch, J. V., Horiuchi, K. and Zinder, N. D. (1978) Proc. Natl. Acad. Sci. USA, 75, 226.

    Google Scholar 

  190. Lautenberger, J. A., Kan, N. C., Lackey, D., Linn, S., Edgell, M. H. and Hutchison, C. A. (1978) Proc. Natl. Acad. Sci. USA, 75, 2271.

    PubMed  CAS  Google Scholar 

  191. Kan, N. C., Lautenberger, J. A., Edgell, M. H. and Hutchison, C. A. (1979) J. Mol. Biol.., 130, 191.

    PubMed  Google Scholar 

  192. Vovis, G. F., Horiuchi, K. and Zinder, N. D. (1974) Proc. Natl. Acad. Sci. USA, 71, 3810.

    PubMed  CAS  Google Scholar 

  193. Bickle, T. A., Brack, C. and Yuan, R. (1978) Proc. Natl. Acad. Sci. USA, 75, 3099.

    PubMed  CAS  Google Scholar 

  194. Yuan, R., Hamilton, D. L. and Burckhardt, J. (1980) Cell, 20, 237.

    PubMed  CAS  Google Scholar 

  195. Yuan, R. (1981) Annu. Rev. Biochem., 50, 285.

    PubMed  CAS  Google Scholar 

  196. Frederick, C. A., Grable, J., Melia, M., Samudzi, C., Jen-Jacobsen, L. et al. (1984) Nature (London), 309, 327.

    CAS  Google Scholar 

  197. Subramanian, K. M., Weissman, S. M., Zain, B. S. and Roberts, R. J. (1977)J. Mol. Biol.., 110, 297.

    PubMed  Google Scholar 

  198. Kleid, D., Humayun, Z., Jeffrey, A. and Ptashne, M. (1976) Proc. Natl. Acad. Sci. USA, 73, 293.

    PubMed  CAS  Google Scholar 

  199. Lacks, S. and Greenberg, B. (1975) J. Biol. Chem., 250, 4090.

    Google Scholar 

  200. Roberts, R. J. (1976) CRC Crit. Rev. Biochem., 4, 123.

    PubMed  CAS  Google Scholar 

  201. Roberts, R. J. (1982) Nucleic Acids Res., 10, r117.

    PubMed  CAS  Google Scholar 

  202. Roberts, R. J. (1984) Nucleic Acids Res., 12 (Suppl) r167.

    PubMed  Google Scholar 

  203. Ehbrecht, H-J., Pingoud, A., Urbanke, C., Maass, G. and Gualerzi, C. (1985) J. Biol. Chem., 260, 6160.

    PubMed  CAS  Google Scholar 

  204. Endlich, B. and Linn, S. (1985) J. Biol. Chem., 260, 5720.

    PubMed  CAS  Google Scholar 

  205. Endlich, B. and Linn, S. (1985) J. Biol. Chem., 260, 5729.

    PubMed  CAS  Google Scholar 

  206. Le Bon, J. M., Kado, C., Rosenthall, L. J. and Chirikjian, J. G. (1978) Proc. Natl. Acad. Sci. USA, 75, 4097.

    Google Scholar 

  207. Brown, E. L., Musich, P. R. and Maio, J. J. (1978) Nucleic Acids Res., 5, 1093.

    PubMed  CAS  Google Scholar 

  208. Watabe, H., Iino, T., Kaneko, T., Shibata, T. and Ando, T. (1983) J. Biol. Chem., 258, 4663.

    PubMed  CAS  Google Scholar 

  209. Shibata, T., Watabe, H., Kaneko, T., Iino, T. and Ando, T. (1984) J. Biol. Chem., 259, 10499.

    PubMed  CAS  Google Scholar 

  210. Smith, H. O. and Nathans, D. (1973)J. Mol. Biol.., 81, 419.

    PubMed  Google Scholar 

  211. Sharp, P. A., Sugden, B. and Sambrook, J. (1973) Biochemistry, 12, 3055.

    PubMed  CAS  Google Scholar 

  212. Sugisaki, H. and Takanarni, M. (1973) Nature (London) New Biol., 246, 138.

    CAS  Google Scholar 

  213. Danna, K. J., Sack, G. H. Jr and Nathans, D. (1973) J. Mol. Biol.., 78, 363.

    PubMed  Google Scholar 

  214. Singer, J., Roberts-Ems, J. and Riggs, A. D. (1979) Science, 203, 1019.

    PubMed  CAS  Google Scholar 

  215. Waalwijk, C. and Flaveli, R. A. (1978) Nucleic Acids Res., 5, 3231.

    PubMed  CAS  Google Scholar 

  216. Hadi, S. M., Bachi, B., Iida, S. and Bickle, T. A. (1983) J. Mol. Biol.., 165, 19.

    PubMed  Google Scholar 

  217. Reiser, J. and Yuan, R. (1977) J. Biol. Chem., 252, 451.

    PubMed  CAS  Google Scholar 

  218. Hotchkiss, R. D. (1948) J. Biol. Chem., 175, 315.

    PubMed  CAS  Google Scholar 

  219. Burdon, R. H. and Adams, R. L. P. (1980) Trends Biochem Sci., 5, 294.

    CAS  Google Scholar 

  220. Adams, R. L. P. and Burdon, R. H. (1982) CRC Crit. Rev. Biochem., 13, 349.

    PubMed  CAS  Google Scholar 

  221. Adams, R. L. P. and Burdon, R. H. (1985) Molecular Biology of DNA Methylation, Springer-Verlag, New York.

    Google Scholar 

  222. Razin, A., Cedar, H. and Riggs, A. D. (1984) DNA Methylation, Springer-Verlag, New York.

    Google Scholar 

  223. Willis, D. B. and Granoff, A. (1980) Virology, 107, 250.

    PubMed  CAS  Google Scholar 

  224. Diala, E. S. and Hoffman, R. M. (1983) J. Virol., 45, 482.

    PubMed  CAS  Google Scholar 

  225. Bird, A. P., Taggart, M. H. and Smith, B. A. (1979) Cell, 17, 889.

    PubMed  CAS  Google Scholar 

  226. Borek, E. and Srinivasan, P. R. (1966) Annu. Rev. Biochem., 35, 275.

    CAS  Google Scholar 

  227. Groudine, J. and Conkin, K. F. (1985) Science, 228, 1061.

    PubMed  CAS  Google Scholar 

  228. Salzer, W. (1977) Cold Spring Harbor Symp. Quant. Biol., 42, 985.

    Google Scholar 

  229. Bird, A. P. (1980) Nucleic Acids Res., 5, 1499.

    Google Scholar 

  230. Adams, R. L. P. and Eason, R. (1984) Nucleic Acids Res., 12, 5869.

    PubMed  CAS  Google Scholar 

  231. Max, E. E. (1984) Nature (London), 310, 100.

    CAS  Google Scholar 

  232. Jaenisch, R. and Jahner, D. (1984) Biochim. Biophys. Acta, 782, 1.

    PubMed  CAS  Google Scholar 

  233. Pollack, Y., Stein, L., Razin, A. and Cedar, H. (1980) Proc. Natl. Acad. Sci. USA, 11, 6463.

    Google Scholar 

  234. Doerfler, W. (1984) Curr. Top. Microbiol. Immunol., 108, 79.

    PubMed  CAS  Google Scholar 

  235. Sager, R. and Kitchin, R. (1975) Science, 189, 426.

    PubMed  CAS  Google Scholar 

  236. Wolf, S. F., Jolly, D. J., Lunnen, K. D., Friedmann, T. and Migeon, B. R. (1984) Proc. Natl. Acad. Sci. USA, 81, 2806.

    PubMed  CAS  Google Scholar 

  237. Kratzer, P. G., Chapman, V. M., Lambert, H., Evans, R. E. and Liskay, R. M. (1983) Cell, 33, 37.

    PubMed  CAS  Google Scholar 

  238. Shapiro, L. J. and Mohandas, T. (1983) Cold Spring Harbor Symp. Quant. Biol., 47, 631.

    PubMed  Google Scholar 

  239. Adams, R. L. P., Fulton, J. and Kirk, D. (1982) Biochim. Biophys. Acta, 697, 286.

    PubMed  CAS  Google Scholar 

  240. Tanaka, M., Hibasami, H., Nagai, J. and Ikeda, T. (1980) Aust. J. Exp. Biol. Med. Sci., 58, 391.

    PubMed  Google Scholar 

  241. Taylor, S. M. and Jones, P. A. (1979) Cell, 17, 771.

    PubMed  CAS  Google Scholar 

  242. Ley, T. J., Chiang, Y. L., Hiadaris, D., Anagnou, N. P., Wilson, V. L. et al. (1984) Proc. Natl. Acad. Sci. USA, 81, 6618.

    PubMed  CAS  Google Scholar 

  243. Sol, D. and Kline, L. K. (1982) in The Enzymes (ed. P. D. Boyer), Academic Press, New York, vol. 15, p. 557.

    Google Scholar 

  244. Kline, L. and Sol, D. (1982) in The Enzymes (ed. P. D. Boyer), Academic Press, New York, vol. 15, p. 567.

    Google Scholar 

  245. Hindley, J. (1983) DNA Sequencing (eds T. S. Work and R. H. Burdon), Elsevier Biomedical Press, Amsterdam.

    Google Scholar 

  246. Richardson, C. C. (1981) in The Enzymes (ed. P. D. Boyer), Academic Press, New York, vol. 14, p. 299.

    Google Scholar 

  247. Novogrodsky, A., Tal, M., Traub, A. and Hurwitz, J. (1966) J. Biol. Chem., 241, 2933.

    PubMed  CAS  Google Scholar 

  248. Lillehaug, J. R. (1977) Eur. J. Biochem., 73, 499.

    PubMed  CAS  Google Scholar 

  249. Jarvest, R. L. and Lowe, G. (1981) Biochem. J., 199, 273.

    PubMed  CAS  Google Scholar 

  250. Van de Sande, J. H., Weppe, K. and Khorana, H. G. (1973) Biochemistry, 12, 5050.

    PubMed  Google Scholar 

  251. Becker, A. and Hurwitz, J. (1967) J. Biol. Chem., 242, 936.

    PubMed  CAS  Google Scholar 

  252. Soltis, D. A. and Uhlenbeck, O. C. (1982) J. Biol. Chem., 257, 11340.

    PubMed  CAS  Google Scholar 

  253. Soltis, D. A. and Uhlenbeck, D. C. (1982) J. Biol. Chem., 257, 11332.

    PubMed  CAS  Google Scholar 

  254. Berkner, K. L. and Folk, W. R. (1977) J. Biol. Chem., 252, 3176.

    PubMed  CAS  Google Scholar 

  255. Maxam, A. M. and Gilbert, W. (1980) Methods Enzymol., 65, 499.

    PubMed  CAS  Google Scholar 

  256. Levin, C. L. and Zimmerman, S. B. (1976) J. Biol. Chem., 251, 1767.

    PubMed  CAS  Google Scholar 

  257. Tamdra, S., Teraoka, H. and Tsukada, K. (1981) Eur. J. Biochem., 115, 449.

    Google Scholar 

  258. Zimmerman, S. B. and Pheiffer, B. H. (1981) in The Enzymes (ed. P. D. Boyer), Academic Press, New York, vol. 14, p. 315.

    Google Scholar 

  259. Tsukada, K. and Ichimura, M. (1971) Biochem. Biophys. Res. Commun., 42, 1156.

    PubMed  CAS  Google Scholar 

  260. Shuman, S. and Hurwitz, J. (1979) J. Biol. Chem., 254, 10396.

    PubMed  CAS  Google Scholar 

  261. Okada, N., Noguchi, S., Kasai, H., Shindo-Okada, N., Ohgi, T., Goto, T. and Nishimura, S. (1979) J. Biol. Chem., 254, 3067.

    PubMed  CAS  Google Scholar 

  262. Nishimura, S. (1983) Prog. Nucleic Acids Res. Mol. Biol., 28, 49.

    CAS  Google Scholar 

  263. Singhai, R. P. (1983) Prog. Nucleic Acids Res. Mol Biol., 28, 75.

    Google Scholar 

  264. Elliott, M. S. and Trewyn, R. W. (1984) J. Biol. Chem., 259, 2407.

    PubMed  CAS  Google Scholar 

  265. McNutt, W, S. (1955) Methods Enzymol., 2, 464.

    CAS  Google Scholar 

  266. Coulondre, C., Miller, J. H., Farabrough, P. J. and Gilbert, W. (1978) Nature (London), 274, 775.

    CAS  Google Scholar 

  267. Scarano, E., Iaccarino, M., Grippo, P. and Parisi, E. (1967) Proc. Natl. Acad. Sci. USA, 57, 1394.

    PubMed  CAS  Google Scholar 

  268. Liao, T-H. (1985) J. Biol. Chem., 260, 10708.

    PubMed  CAS  Google Scholar 

  269. Suck, D., Lahm, A. and Oefner, C. (1988) Nature (London), 332, 464.

    CAS  Google Scholar 

  270. Cowan, G. M., Gann, A. A. F. and Murray, N. E. (1989) Cell, 56, 103.

    PubMed  CAS  Google Scholar 

  271. Price, C., Lingner, J., Bickle, T. A., Firman, K. and Glover, S. W. (1989) J. Mol. Biol., 205, 115.

    PubMed  CAS  Google Scholar 

  272. Lacks, S. A., Mannarelli, B. M., Springhorn, S. S. and Greenberg, B. (1986) Cell, 46, 993.

    PubMed  CAS  Google Scholar 

  273. Roberts, R. J. (1990) Nucleic Acids Res., 18 Suppl, 2331.

    Google Scholar 

  274. Trautner, T. A., Balganesh, T., Wilke, K., Nayer-Weidner, M., Rauhut, E. et al. (1988) Gene, 74, 267.

    PubMed  CAS  Google Scholar 

  275. Wilke, K., Rauhut, E., Nayer-Weidner, Lauster R., Pawlek, B. et al. (1988) EMBO J., 7, 2601.

    PubMed  CAS  Google Scholar 

  276. Adams, R. L. P. (1990) Biochem. J., 265, 309.

    PubMed  CAS  Google Scholar 

  277. Monk, M., Boubelik, M. and Lehnert, S. (1987) Development, 99, 371.

    PubMed  CAS  Google Scholar 

  278. Silva, A. J. and White, R. (1988) Cell, 54, 145.

    PubMed  CAS  Google Scholar 

  279. Wilks, A., Seldran, M. and Jost, J.-P. (1984) Nucleic Acids Res., 12, 1163.

    PubMed  CAS  Google Scholar 

  280. Razin, A., Szyf, M., Kafri, T., Roll, M., Giloh, H. et al. (1986) Proc. Natl. Acad. Sci. USA, 83, 2827.

    PubMed  CAS  Google Scholar 

  281. Wiebauer, K. and Jiricny, J. (1989) Nature (London), 339, 234.

    CAS  Google Scholar 

  282. Ogden, G. B., Pratt, M. J. and Schaechter, M. (1988) Cell, 54, 127.

    PubMed  CAS  Google Scholar 

  283. Tsagris, M., Tabler, M. and Sänger, H. L. (1991) Nucleic Acids Res., 19, 1605.

    PubMed  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Rights and permissions

Reprints and permissions

Copyright information

© 1992 Roger L. P. Adams, John T. Knowler and David P. Leader

About this chapter

Cite this chapter

Adams, R.L.P., Knowler, J.T., Leader, D.P. (1992). Degradation and modification of nucleic acids. In: The Biochemistry of the Nucleic Acids. Springer, Dordrecht. https://doi.org/10.1007/978-94-011-2290-0_4

Download citation

  • DOI: https://doi.org/10.1007/978-94-011-2290-0_4

  • Publisher Name: Springer, Dordrecht

  • Print ISBN: 978-0-412-39940-4

  • Online ISBN: 978-94-011-2290-0

  • eBook Packages: Springer Book Archive

Publish with us

Policies and ethics