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MOIL-View — A Program for Visualization of Structure and Dynamics of Biomolecules and STO — A Program for Computing Stochastic Paths

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Modelling of Biomolecular Structures and Mechanisms

Part of the book series: The Jerusalem Symposia on Quantum Chemistry and Biochemistry ((JSQC,volume 27))

Abstract

The structure and implementation of two computer programs are described. MOIL-view is a user friendly and flexible program for visualization of molecular structure and dynamics. STO is a program to compute most probable stochastic trajectories between fixed points. STO is useful to compute reaction paths in complex thermal systems.

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References

  1. R. Elber, A. Roitberg, C. Simmerling, R. Goldstein, G. Verkhivker, and H. Li: ‘MOIL: A molecular dynamics program with emphasis on conformational searches and reaction path calculations in large biological molecules’, Proceedings of the NATO Workshop ‘Statistical Mechanics, Protein Structure and Protein-Substrate Interactions’ ,Corsica, June 1993, Plenum, New York.

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Author information

Authors and Affiliations

  1. Department of Chemistry, University of Illinois at Chicago, 829 West Taylor, Chicago, IL, 60607, USA

    Carlos Simmerling & Jing Zhang

  2. Department of Physical Chemistry and the Israel Center for Structural Biology, The Hebrew University, Jerusalem, 91904, Israel

    Ron Elber

Authors
  1. Carlos Simmerling
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  2. Ron Elber
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  3. Jing Zhang
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Editor information

Editors and Affiliations

  1. Fondation Edmond de Rothschild, Institut de Biologie Physico-Chimique, Paris, France

    A. Pullman  & B. Pullman  & 

  2. The Israel Academy of Sciences and Humanities, Jerusalem, Israel

    J. Jortner

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© 1995 Springer Science+Business Media Dordrecht

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Simmerling, C., Elber, R., Zhang, J. (1995). MOIL-View — A Program for Visualization of Structure and Dynamics of Biomolecules and STO — A Program for Computing Stochastic Paths. In: Pullman, A., Jortner, J., Pullman, B. (eds) Modelling of Biomolecular Structures and Mechanisms. The Jerusalem Symposia on Quantum Chemistry and Biochemistry, vol 27. Springer, Dordrecht. https://doi.org/10.1007/978-94-011-0497-5_20

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  • DOI: https://doi.org/10.1007/978-94-011-0497-5_20

  • Publisher Name: Springer, Dordrecht

  • Print ISBN: 978-94-010-4222-2

  • Online ISBN: 978-94-011-0497-5

  • eBook Packages: Springer Book Archive

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