Abstract
While diagnostics based on the polymerase chain reaction (PCR) are being applied actively in medical and forensic studies, much less development has occurred with respect to plant pathology and other organisms in the environment (for review see [11]). Despite the many obvious opportunities, applications often have been retarded significantly by the special problems that are associated with such samples, namely inhibitors of the PCR reactions which are frequently present in plant and soil extracts and can severely retard or completely prevent PCR amplification.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
Preview
Unable to display preview. Download preview PDF.
References
Faegri A, Torsvik VL, Gorsoyr J (1977) Bacterial and fungal activities in soil: separation of bacteria by a rapid centrifugation technique. Soil Biol Biochem 9: 105–112.
Haqqi TM, Sarcar G, David CS, Sommer SS (1988) Specific amplification with PCR of a refractory segment of genomic DNA. Nucl Acids Res 16: 11844–11850.
Holben WE, Jansson JK, Chelm BK, Tiedje JM (1983) DNA probe method for the detection of specific microorganisms in the soil bacterial community. Appl Environ Microbiol 49: 703–711.
Hu X, Nazar RN, Robb EJ (1993) Quantification of Verticillium biomass in wilt disease development. Physiol Mol Plant Pathol 42: 23–36.
Nazar RN, Hu X, Schmidt J, Culham D, Robb EJ (1991) Potential use of PCR-amplified ribosomal intergenic sequences in the detection and differentiation of Verticillium wilt pathogens. Physiol Mol Plant Pathol 39: 1–11.
Oerke EC, Dehne HW, Schonbeck F, Weber A (1994) Crop Production and Crop Protection. Estimated Losses in Major Food and Cash Crops. Elsevier, Amsterdam.
Picard C, Ponsonnet C, Paget E, Nesme X, Simonet P (1992) Detection and enumeration of bacteria in soil by direct DNA extraction and polymerase chain reaction. Appl Environ Microbiol 58: 2717–2722.
Powelson ML, Rowe RC (1993) Biology and management of early dying of potatoes. Annu Rev Phytopathol 31: 111–126.
Robb EJ, Hu X, Platt H, Nazar RN (1994) PCR assays for the detection and quantification of Verticillium species in potato. In: Dewey M, Oliver R, Schots A (eds) Modern Detection Assays for Plant Pathogenic Fungi, pp. 83–90. CAB International, University Press, Cambridge, UK.
Smalla K, Cresswell N, Mendonca-Hagler LC, Wolters A, Van Elsas JD (1993) Rapid DNA extraction protocol from soil for polymerase chain reaction-mediated amplification. J Appl Bacteriol 74: 78–85.
Steffan RJ, Atlas RM (1991) Polymerase chain reaction: application in environmental microbiology. Annu Rev Microbiol 45: 137–161.
Volossiouk T, Robb EJ, Nazar RN (1995) Direct DNA extraction for PCR-mediated assay of soil organisms. Appl Environ Microbiol 61: 3972–3976.
Author information
Authors and Affiliations
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 1996 Springer Science+Business Media Dordrecht
About this chapter
Cite this chapter
Nazar, R.N., Robb, E.J., Volossiouk, T. (1996). Direct extraction of fungal DNA from soil. In: Akkermans, A.D.L., Van Elsas, J.D., De Bruijn, F.J. (eds) Molecular Microbial Ecology Manual. Springer, Dordrecht. https://doi.org/10.1007/978-94-009-0215-2_1
Download citation
DOI: https://doi.org/10.1007/978-94-009-0215-2_1
Publisher Name: Springer, Dordrecht
Print ISBN: 978-94-011-7660-6
Online ISBN: 978-94-009-0215-2
eBook Packages: Springer Book Archive