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Application of Next-Generation Sequencing Technologies for Genetic Diversity Analysis in Cereals

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Abstract

The increased throughput of next-generation sequencing (NGS) technologies made feasible large-scale analysis of DNA sequence variation at the whole genome level not only in model species but also in large cereal genomes. Here we present an overview of studies using NGS-based approaches for characterizing genetic variation in major cereal crops. These early studies demonstrated the power of NGS for providing insights concerning the evolutionary history of crop species, as well as genomic locations of genes underlying important agronomic traits and genomic regions subjected to selection during domestication and geographic adaptation.

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Acknowledgments

This work was supported by the USDA National Institute of Food and Agriculture (2009-65300-05638), BARD (IS-4137-08), and Triticeae CAP (2011-68002-30029) grants. We would like to thank Miranda Gray for valuable comments on the earlier versions of this chapter.

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  1. Department of Plant Pathology, Kansas State University, Manhattan, KS, 66502, USA

    Seifollah Kiani & Eduard Akhunov

  2. Integrated Genomics Facility, Kansas State University, Manhattan, KS, 66502, USA

    Alina Akhunova

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  1. Seifollah Kiani
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  2. Alina Akhunova
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  3. Eduard Akhunov
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Correspondence to Eduard Akhunov .

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  1. Dept. of Genetics & Plant Breeding, Molecular Biology Laboratory, Ch. Charan Singh University, Meerut, 250004, India

    Pushpendra K. Gupta

  2. ICRISAT, Centre of Excellence in Genomics (CEG), Patancheru, 502 324, Andra Pradesh, India

    Rajeev K. Varshney

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Kiani, S., Akhunova, A., Akhunov, E. (2013). Application of Next-Generation Sequencing Technologies for Genetic Diversity Analysis in Cereals. In: Gupta, P., Varshney, R. (eds) Cereal Genomics II. Springer, Dordrecht. https://doi.org/10.1007/978-94-007-6401-9_4

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