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Horizontal Gene Transfer in Eukaryotes: Fungi-to-Plant and Plant-to-Plant Transfers of Organellar DNA

  • Susanne S. Renner
  • Sidonie Bellot
Part of the Advances in Photosynthesis and Respiration book series (AIPH, volume 35)

Summary

This review focuses on horizontal gene transfer (HGT) involving bacteria, fungi, and plants (Viridiplantae). It highlights in particular the persistent challenge of recognizing HGT, which requires a combination of methods from bioinformatics, phylogenetics, and molecular biology. Non-phylogenetic methods rely on compositional structure, such as G/C content, dinucleotide frequencies, codon usage biases, or co-conversion tracts, while phylogenetic methods rely on incongruence among gene trees, one of which is taken to represent the true organismal phylogeny. All methods are handicapped by short sequence lengths with limited or highly uneven substitution signal; the statistical problems of working with taxon-rich alignments of such sequences include low support for inferred relationships, and difficult orthology assessment. Plant-to-plant HGT is known from two dozen mitochondrial genes and species of phylogenetically and geographically widely separated ferns, gymnosperms, and angiosperms, with seven cases involving parasitic plants. Only one nuclear HGT has come to light, and extremely few fungi-to-plant transfers. Plant mitochondrial genomes, especially in tracheophytes, are prone to take up foreign DNA, but evolutionary consequences of this are still unclear.

Keywords

Horizontal Gene Transfer Horizontal Transfer Codon Usage Bias Horizontal Gene Transfer Event Plant Mitochondrial Genome 
These keywords were added by machine and not by the authors. This process is experimental and the keywords may be updated as the learning algorithm improves.

Abbreviations:

BLAST

Basic local alignment search tool;

cpDNA;

Plastid DNA;

DNA

Deoxyribonucleic acid;

EST

Expressed sequence tag;

HGT

Horizontal gene transfer;

HTT

Horizontal transposon transfer;

mt(DNA)

Mitochondrial (DNA);

MULE

Mu-like elements (Mu is mutator in corn);

My

Million years;

ORF

Open reading frame;

PCR

Polymerase chain reaction;

RNA

Ribonucleic acid;

T-DNA

Transferred DNA;

TE

Transposable element;

Ti-plasmid

Tumor-inducing plasmid

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© Springer Science+Business Media B.V. 2012

Authors and Affiliations

  1. 1.Systematic Botany and MycologyUniversity of MunichMunichGermany

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