Abstract
Deep-sea hydrothermal vent environments represent one of the most physically and chemically diverse biomes in Earth. The chemical and thermal gradients (e.g., >350°C across distances as small as several centimeters in active chimneys) provide a wide range of niches for microbial communities living there (Huber and Holden 2008; Nakagawa and Takai 2008; Reysenbach et al. 2000; Takai et al. 2006a). Psychrophiles, mesophiles, thermophiles and hyperthermophiles (organisms growing best from 4°C to above 80°C) thrive by chemolithoautotrophy or heterotrophy, utilizing abundant available inorganic and organic chemical energy, carbon and other element sources. They reside as free-living forms in the rocky and sedimentary mixing interfaces between hot, highly reductive hydrothermal fluids (high temperatures of endmember hydrothermal fluids) and ambient seawaters beneath and at the seafloor (along subseafloor hydrothermal fluid paths, and in and on chimneys and sediments) and within lower temperatures of diffuse fluids mainly resulting from subseafloor mixing between endmember hydrothermal fluids and ambient seawaters, and as facultative or obligate symbionts on and within invertebrate hosts (Takai et al. 2006a).
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References
Bischoff JL, Rosenbauer RJ (1985) An empirical equation of state for hydrothermal seawater (3.2 percent NaCl). Am J Sci 285:725–763
Brazelton WJ, Schrenk MO, Kelley DS, Baross JA (2006) Methane- and sulfur-metabolizing microbial communities dominate the Lost City hydrothermal field ecosystem. Appl Environ Microbiol 72:6257–6270
Charlou JL, Fouquet Y, Donval JP, Auzende JM, Jean-Baptiste P, Stievenard M, Michel S (1996) Mineral and gas geochemistry of hydrothermal fluids on an ultrafast spreading ridge: East Pacific Rise, 17° to 19°S (Naudur cruise, 1993)-phase separation processes controlled by volcanic and tectonic activity. J Geophys Res 101:15899–15919
Charlou JL, Donval JP, Fouquet Y, Jean-Baptiste P, Holm N (2002) Geochemistry of high H2 and CH4 vent fluids issuing from ultramafic rocks at the Rainbow hydrothermal field (36j14VN, MAR). Chem Geol 191:345–359
Edwards KJ, Rogers DR, Wirsen CO, McCollom TM (2003) Isolation and characterization of novel psychrophilic, neutrophilic, Fe-oxidizing, chemolithoautotrophic alpha- and gamma-proteobacteria from the deep sea. Appl Environ Microbiol 69:2906–2913
Emerson D, Rentz JA, Lilburn TG, Davis RE, Aldrich H, Chan C, Moyer CL (2007) A novel lineage of proteobacteria involved in formation of marine fe-oxidizing microbial mat communities. PLoS One 2:e667
Escrig S, Bézos A, Goldstein SL, Langmuir CH, Michael PJ (2009) Mantle source variations beneath the Eastern Lau Spreading Center and the nature of subduction components in the Lau basin–Tonga arc system. Geochem Geophys Geosyst 10:Q04014. doi:10.1029/2008GC002281
Ferrini VL, Tivey MK, Carbotte SM, Martinez F, Roman C (2008) Variable morphologic expression of volcanic, tectonic, and hydrothermal processes at six hydrothermal vent fields in the Lau back-arc basin. Geochem Geophys Geosyst 9:Q07022. doi:10.1029/2008GC002047
Fryer P, Sujimoto H, Sekine M, Johnson LE, Kasahara J, Masuda H, Gamo T, Ishi T, Ariyoshi M, Fujioka K (1998) Volcanoes of the southwestern extension of the active Mariana island arc: new swath-mapping and geochemical studies. Island Arc A:596–607
Gallant RM, Von Damm KL (2006) Geochemical controls on hydrothermal fluids from the Kairei and Edmond Vent Fields, 23°–25°S, Central Indian Ridge. Geochem Geophys Geosyst 7:Q06018. doi:10.1029/2005GC001067
Gamo T, Okamura K, Charlou JL, Urabe T, Auzende JM, Ishibashi J, Shitashima K, Kodama Y, Shipboard scientific party of the ManusFlux Cruise (1997) Acidic and sulfate-rich hydrothermal fluid from the Manus basin, Papua New Guinea. Geology 25:139–142
Gamo T, Masuda H, Yamanaka T et al (2004) Discovery of a hydrothermal venting site in the southernmost Mariana Arc: Al-rich hydrothermal plumes and white smoker activity associated with biogenic methane. Geochem J 38:527–534
Glasby GP, Notsu K (2003) Submarine hydrothermal mineralization in the Okinawa Trough, SW of Japan: an overview. Ore Geol Rev 23:299–339
Hashimoto J, Ohta S, Gamo T, Chiba H, Yamaguchi T, Tsuchida S, Okudaira T, Watabe H, Yamanaka T, Kitazawa M (2001) First hydrothermal vent communities from the Indian Ocean discovered. Zool Sci 18:717–721
Huber JA, Holden JF (2008) Modeling the impact of diffuse vent microorganisms along Mid-Ocean ridges and flanks. In: Lowell RP, Seewald JS, Metaxas A, Perfit MR (eds) Magma to microbe: modeling hydrothermal processes at oceanic spreading centers, vol 178, Geophysical Monograph Series. American Geophysical Union, Washington, DC, pp 215–231
Inagaki F, Kuypers MM, Tsunogai U et al (2006) Microbial community in a sediment-hosted CO2 lake of the southern Okinawa Trough hydrothermal system. Proc Natl Acad Sci USA 103:14164–14169
Ishibashi J, Urabe T (1995) Hydrothermal activity related to Arc-Backarc magamtism in the Western Pacific. In: Taylor B (ed) Backarc Basins: tectonics and magmatism. Plenum Press, New York, pp 451–495
Ishibashi J, Lupton JE, Yamaguchi T, Querellou J, Nunoura T, Takai K (2006) Expedition reveals changes in Lau Basin hydrothermal system, Eos Trans. AGU 87:13–17
Johnson JW, Oelkers EH, Helgeson HC (1992) SUPCRT92: a software package for calculating the standard molal thermodynamic properties of minerals, gases, aqueous species, and reactions from 1 to 5000 bar and 0 to 1000°C. Comput Geosci 18:899–947
Jørgensen BB, Boetius A (2007) Feast and famine–microbial life in the deep-sea bed. Nat Rev Microbiol 5:770–781
Konno U, Tsunogai U, Nakagawa F, Nakaseama N, Ishibashi J, Nunoura T, Nakamura K (2006) Liquid CO2 venting on the seafloor: Yonaguni Knoll IV hydrothermal system, Okinawa Trough. Geophys Res Lett 33:L16607. doi:10.1029/2006GL026115
Kumagai H, Nakamura K, Toki T et al (2008) Geological background of the Kairei and Edmond hydrothermal fields along the Central Indian Ridge: implications of their vent fluids’ distinct chemistry. Geofluids 8:239–251
Lee HS, Kang SG, Bae SS et al (2008) The complete genome sequence of Thermococcus onnurineus NA1 reveals a mixed heterotrophic and carboxydotrophic metabolism. J Bacteriol 190:7491–7499
Letouzey J, Kimura M (1986) Okinawa Trough: genesis of a back-arc basin developing along a continental margin. Tectonophysics 125:209–230
Lupton J, Lilley M, Butterfield D, Evans L, Embley R, Massoth G, Christenson B, Nakamura K, Schmidt M (2008) Venting of a separate CO2-rich gas phase from submarine arc volcanoes: examples from the Mariana and Tonga-Kermadec arcs. J Geophys Res 113:B08S12. doi:10.1029/2007JB005467
McCliment EA, Voglesonger KM, O’Day PA, Dunn EE, Holloway JR, Cary SC (2006) Colonization of nascent, deep-sea hydrothermal vents by a novel archaeal and nanoarchaeal assemblage. Environ Microbiol 8:114–125
McCollom TM (2007) Geochemical constraints on sources of metabolic energy for chemolithoautotrophy in ultramafic-hosted deep-sea hydrothermal systems. Astrobiology 7:933–950
McCollom TM, Shock EL (1997) Geochemical constraints on chemolithoautotrophic metabolism by microorganisms in seafloor hydrothermal systems. Geochim Cosmochim Acta 61:4375–4391
Melchert B, Devey CW, German CR, Lackschewitz KS, Seifert R, Walter M, Mertens C, Yoerger DR, Baker ET, Paulick H, Nakamura K (2008) First evidence for high-temperature off-axis venting of deep crustal/mantle heat: the Nibelungen hydrothermal field, southern Mid-Atlantic Ridge. Earth Planet Sci Lett 275:61–69
Moussard H, L’Haridon S, Tindall BJ, Banta A, Schumann P, Stackebrandt E, Reysenbach AL, Jeanthon C (2004) Thermodesulfatator indicus gen. nov., sp. nov., a novel thermophilic chemolithoautotrophic sulfate-reducing bacterium isolated from the Central Indian Ridge. Int J Syst Evol Microbiol 54:227–233
Nakagawa S, Takai K (2006) The isolation of thermophiles from deep-sea hydrothermal environments. In: Rainey FA, Oren A (eds) Extremophiles. Methods in microbiology (vol 35). Elsevier, London, pp 57–91
Nakagawa S, Takai K (2008) Deep-sea vent chemoautotrophs: diversity, biochemistry and ecological significance. FEMS Microbiol Ecol 65:1–14
Nakagawa S, Takai K, Inagaki F, Chiba H, Ishibashi J, Kataoka S, Hirayama H, Nunoura T, Horikoshi K, Sako Y (2005) Variability in microbial community and venting chemistry in a sediment-hosted backarc hydrothermal system: impacts of subseafloor phase-separation. FEMS Microbiol Ecol 54:141–155
Nakagawa T, Takai K, Suzuki Y, Hirayama H, Konno U, Tsunogai U, Horikoshi K (2006) Geomicrobiological exploration and characterization of a novel deep-sea hydrothermal system at the TOTO caldera in the Mariana Volcanic Arc. Environ Microbiol 8:37–49
Nakamura K, Morishita T, Bach W, Klein F, Hara K, Okino K, Takai K, Kumagai H (2009) Serpentinized troctolites exposed near the Kairei hydrothermal field, Central Indian Ridge: insights into the origin of the Kairei hydrothermal fluid supporting a unique microbial ecosystem. Earth Planet Sci Lett 280:128–136
Nunoura T, Takai K (2009) Comparison of microbial communities associated with phase-separation-induced hydrothermal fluids at the Yonaguni Knoll IV hydrothermal field, the Southern Okinawa Trough. FEMS Microbiol Ecol 67:351–370
Pagé A, Tivey MK, Stakes DS, Reysenbach AL (2008) Temporal and spatial archaeal colonization of hydrothermal vent deposits. Environ Microbiol 10:874–884
Perner M, Kuever J, Seifert R, Pape T, Koschinsky A, Schmidt K, Strauss H, Imhoff JF (2007a) The influence of ultramafic rocks on microbial communities at the Logatchev hydrothermal field, located 15 degrees N on the Mid-Atlantic Ridge. FEMS Microbiol Ecol 61:97–109
Perner M, Seifert R, Weber S, Koschinsky A, Schmidt K, Strauss H, Peters M, Haase K, Imhoff JF (2007b) Microbial CO2 fixation and sulfur cycling associated with low-temperature emissions at the Lilliput hydrothermal field, southern Mid-Atlantic Ridge (9 degrees S). Environ Microbiol 9:1186–1201
Resing JA, Lebon G, Baker ET, Lupton JE, Embley RW, Massoth GJ, Chadwick WW, de Ronde CEJ (2007) Venting of acid-sulfate fluids in a high-sulfidation setting at NW rota-1 submarine volcano on the Mariana Arc. Econ Geol 102:1047–1061
Reysenbach AL, Banta AB, Boone DR, Cary SC, Luther GW (2000) Microbial essentials at hydrothermal vents. Nature 404:835–845
Sakai H, Gamo T, Kim ES et al (1990) Unique chemistry of the hydrothermal solution in the mid-Okinawa Trough backarc basin. Geophys Res Lett 17:2133–2136
Schouten S, Wakeham SG, Hopmans EC, Sinninghe Damsté JS (2003) Biogeochemical evidence that thermophilic archaea mediate the anaerobic oxidation of methane. Appl Environ Microbiol 69:1680–1686
Shock EL, Helgeson HC (1988) Calculation of the thermodynamic and transport properties of aqueous species at high pressures and temperatures: correlation algorithms for ionic species and equation of state predictions to 5 kb and 1000°C. Geochim Cosmochim Acta 52:2009–2036
Shock EL, Helgeson HC (1990) Calculation of the thermodynamic and transport properties of aqueous species at high pressures and temperatures: standard partial molal properties of organic species. Geochim Cosmochim Acta 54:915–945
Shock EL, Holland ME (2004) Geochemical energy sources that support the subsurface biosphere. In: Wilcock WSD, Delong EF, Kelley DS, Baross JA, Cary SC (eds) The subseafloor biosphere at Mid-Ocean Ridges, vol 144, Geophysical Monograph Series. AGU, Washington, DC, pp 153–165
Shock EL, Sassani DC, Willis M, Sverjensky DA (1997) Inorganic species in geologic fluids: correlations among standard molal thermodynamic properties of aqueous ions and hydroxide complexes. Geochim Cosmochim Acta 61:907–950
Sokolova TG, Jeanthon C, Kostrikina NA, Chernyh NA, Lebedinsky AV, Stackebrandt E, Bonch-Osmolovskaya EA (2004) The first evidence of anaerobic CO oxidation coupled with H2 production by a hyperthermophilic archaeon isolated from a deep-sea hydrothermal vent. Extremophiles 8:317–323
Suzuki Y, Inagaki F, Takai K, Nealson KH, Horikoshi K (2004) Microbial diversity in inactive chimney structures from deep-sea hydrothermal systems. Microb Ecol 47:186–196
Takai K, Gamo T, Tsunogai U, Nakayama N, Hirayama H, Nealson KH, Horikoshi K (2004a) Geochemical and microbiological evidence for a hydrogen-based, hyperthermophilic subsurface lithoautotrophic microbial ecosystem (HyperSLiME) beneath an active deep-sea hydrothermal field. Extremophiles 8:269–282
Takai K, Oida H, Suzuki Y, Hirayama H, Nakagawa S, Nunoura T, Inagaki F, Nealson KH, Horikoshi K (2004b) Spatial distribution of Marine Crenarchaeota Group I in the vicinity of deep-sea hydrothermal systems. Appl Environ Microbiol 70:2404–2413
Takai K, Nakagawa S, Reysenbach AL, Hoek J (2006a) Microbial ecology of Mid-Ocean Ridges and Back-Arc Basins. In: Christie DM, Fisher CR, Lee SM, Givens S (eds) Back-Arc spreading systems: geological, biological, chemical and physical interactions, vol 166, Geophysical Monograph Series. AGU, Washington, DC, pp 185–213
Takai K, Nakamura K, Suzuki K, Inagaki F, Nealson KH, Kumagai H (2006b) Ultramafics-Hydrothermalism-Hydrogenesis-HyperSLiME (UltraH3) linkage: a key insight into early microbial ecosystem in the Archean deep-sea hydrothermal systems. Paleontol Res 10:269–282
Takai K, Nunoura T, Ishibashi J et al (2008a) Variability in the microbial communities and hydrothermal fluid chemistry at the newly-discovered Mariner hydrothermal field, southern Lau Basin. J Geophys Res 113:G02031. doi:10.1029/2007JG000636
Takai K, Nakamura K, Toki T, Tsunogai U, Miyazaki M, Miyazaki J, Hirayama H, Nakagawa S, Nunoura T, Horikoshi K (2008b) Cell proliferation at 122 degrees C and isotopically heavy CH4 production by a hyperthermophilic methanogen under high-pressure cultivation. Proc Natl Acad Sci USA 105:10949–10954
Takai K, Nunoura T, Suzuki Y et al (2009) Variability in microbial communities in black smoker chimneys at the NW caldera vent field, Brothers volcano, Kermadec arc. Geomicrobiol J. 26:552–569
Van Dover CL, Humphris SE, Fornari D et al (2001) Biogeography and ecological setting of Indian Ocean hydrothermal vents. Science 294:818–823
Wolery TW, Jarek RL (2003) Software user’s manual. EQ3/6, Version 8.0. U.S. Dept. of Energy Report, 10813-UM-8.0-00. Sandia National Laboratories, Albuquerque, New Mexico, p 376
Wolery TJ, Jove-Colon CF (2004) Qualification of thermodynamic data for geochemical modeling of mineral–water interactions in dilute systems. U.S. Dept. of Energy Report, ANL-WIS-GS-000003 REV00. Bechtel SAIC Company, LLC, Las Vegas, Nevada, p 212
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Takai, K., Nakamura, K. (2010). Compositional, Physiological and Metabolic Variability in Microbial Communities Associated with Geochemically Diverse, Deep-Sea Hydrothermal Vent Fluids. In: Barton, L., Mandl, M., Loy, A. (eds) Geomicrobiology: Molecular and Environmental Perspective. Springer, Dordrecht. https://doi.org/10.1007/978-90-481-9204-5_12
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