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Abstract

Glycan profiling is a novel approach to structural analysis of glycans. Its emphasis is on grasping essential information of target glycans in a rapid, sensitive, and high-throughput manner rather than defining covalent structures in a rigorous and time-consuming manner. This information is particularly important for structural glycomics with the absence of a useful automated sequencer analogous to protein and DNA sequencers, which are based on Edman degradation chemistry and Sanger’s dideoxy method, respectively. However, it is obviously difficult to apply this type of logic to glycans, because they have additional aspects increasing structural variety, which the linear molecules lack. They are represented by linkage isomers (i.e., α/β1–2, 1–3, 1–4, 1–6) and branching events. For this type of branching molecules, it seems that a “memory-matching” or “finger-printing” principle should work better. In this chapter, essence of practical approaches to glycan profiling is described.

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References

  • Ebe Y, Kuno A, Uchiyama N, Koseki-Kuno S, Yamada M, Sato T, Narimatsu H, Hirabayashi, J (2006) Application of lectin microarray to crude samples: differential glycan profiling of lec mutants. J Biochem (Tokyo) 139:323–327

    Article  PubMed  CAS  Google Scholar 

  • Hirabayashi J (2004) Lectin-based structural glycomics: glycoproteomics and glycan profiling. Glycoconj J 21:35–40

    Article  PubMed  Google Scholar 

  • Hsu KL, Pilobello KT, Mahal LK (2006) Analyzing the dynamic bacterial glycome with a lectin microarray approach. Nat Chem Biol 2:153–157

    Article  PubMed  CAS  Google Scholar 

  • Kuno A, Uchiyama N, Koseki-Kuno S, Ebe Y, Takashima S, Yamada M, Hirabayashi J (2005) Evanescent-field fluorescence-assisted lectin microarray: a new strategy for glycan profiling. Nat Methods 2:851–856

    Article  PubMed  CAS  Google Scholar 

  • Nakamura-Tsuruta S, Uchiyama N, Hirabayashi J (2005) High-throughput analysis of lectin-oligosaccharide interactions by automated frontal affinity chromatography. Methods Enzymol 415:311–625

    Google Scholar 

  • Shimaoka H, Kuramoto H, Furukawa J, Miura Y, Kurogochi M, Kita Y, Hinou H, Shinohara Y, Nishimura S (2007) One-pot solid-phase glycoblotting and probing by transoximization for high-throughput glycomics and glycoproteomics. Chemistry 13:1664–1673

    Article  PubMed  CAS  Google Scholar 

  • Tateno H, Uchiyama N, Kuno A, Togayachi A, Sato T, Narimatsu H, Hirabayashi J (2007) A novel strategy for mammalian cell surface glycome profiling using lectin microarray. Glycobiology 17:1138–1146

    Article  PubMed  CAS  Google Scholar 

  • Uchiyama N, Kuno A, Koseki-Kuno S, Ebe Y, Horio K, Yamada M, Hirabayashi J (2006) Development of a lectin microarray based on an evanescent-field fluorescence principle. Methods Enzymol 415:341–351

    Article  PubMed  CAS  Google Scholar 

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Hirabayashi, J. (2008). Glycan Profiling. In: Taniguchi, N., Suzuki, A., Ito, Y., Narimatsu, H., Kawasaki, T., Hase, S. (eds) Experimental Glycoscience. Springer, Tokyo. https://doi.org/10.1007/978-4-431-77924-7_16

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