Abstract
This chapter is devoted to introducing the basic use of the BioMap for IMS data analysis. BioMap (free software; http://www.maldi-msi.org) is widely used to process mass spectral data for creation of two-dimensional coordinates of the surface versus intensity with excellent usability. In this chapter, we introduce the following methods: (1) how to set up the BioMap software, (2) the method of ion image reconstruction, and (3) data analyses of the mass spectra among the multiple regions of interest (ROI) and further data analyses; for instance, the differential analysis of mass spectra between the ROIs.
This is a preview of subscription content, log in via an institution to check access.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
Stoeckli M. From http://www.maldi-msi.org/
Stoeckli M, Staab D, Staufenbiel M, et al. (2002) Molecular imaging of amyloid beta peptides in mouse brain sections using mass spectrometry. Anal Biochem 311:33–39
Shimma S, Sugiura Y, Hayasaka T, et al. (2008) Mass imaging and identification of biomole-cules with MALDI-QIT-TOF-based system. Anal Chem 80:878–885
Clerens S, Ceuppens R, Arckens L (2006) CreateTarget and Analyze This!: new software assisting imaging mass spectrometry on Bruker Reflex IV and Ultraflex II instruments. Rapid Commun Mass Spectrom 20:3061–3066
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2010 Springer
About this chapter
Cite this chapter
Hosokawa, N., Sugiura, Y., Setou, M. (2010). Ion Image Reconstruction Using BioMap Software. In: Setou, M. (eds) Imaging Mass Spectrometry. Springer, Tokyo. https://doi.org/10.1007/978-4-431-09425-8_9
Download citation
DOI: https://doi.org/10.1007/978-4-431-09425-8_9
Publisher Name: Springer, Tokyo
Print ISBN: 978-4-431-09424-1
Online ISBN: 978-4-431-09425-8
eBook Packages: Biomedical and Life SciencesBiomedical and Life Sciences (R0)