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Numerical Simulation of Bio-sediment Transport

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Mechanics of Bio-Sediment Transport

Abstract

Mathematical modeling is an effective tool to predict sediment transport. A variety of sediment transport models have been proposed over the past three decades. These models generally focus on the physical properties of sediment without considering the effects of biological processes. Sediment provides an excellent substratum for microorganism colonization, and biofilm formation has been ubiquitously observed in aqueous ecosystems. It is urgent to establish a comprehensive view of sediment transport simultaneously considering the physical, chemical, and biological processes. The changes of sediment properties and transport characteristics after biofilm growth have been introduced in the previous chapters, making it possible to establish a sediment transport model with an integrated view of biofilm effects

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References

  • Amos CL, Bergamasco A, Umgiesser G, Cappucci S, Cloutier D, Flindt MR, Denat L, Cristante S (2004) The stability of tidal flats in Venice Lagoon - The results of in-situ measurements using two benthic, annular flumes. Journal of Marine Systems 51(1–4):211–241

    Google Scholar 

  • Badireddy AR, Chellam S, Gassman PL, Engelhard MH, Lea AS, Rosso KM (2010) Role of extracellular polymeric substances in bioflocculation of activated sludge microorganisms under glucose-controlled conditions. Water Research 44(15):4505–4516

    Google Scholar 

  • Black KS, Tolhurst TJ, Paterson DM, Hagerthey SE (2002) Working with natural cohesive sediments. Journal of Hydraulic Engineering - ASCE 128(1):2–8

    Google Scholar 

  • Changjiang Water Resources Commission of the Ministry of Water Resources (CWRC) (2016) Bulletin of the Yangtze River sediment. http://www.cjh.com.cn/. (in Chinese)

  • Cheng W, Fang HW, Lai HJ, Huang L, Dey S (2018) Effects of biofilm on turbulence characteristics and the transport of fine sediment. Journal of Soils and Sediments 47(8):1017–1024.

    Google Scholar 

  • Chien N, Wan ZH (1999) Mechanics of sediment transport. American Society of Civil Engineers, Reston, VA

    Google Scholar 

  • Davis JA, Kent DB (1990) Surface complexation modeling in aqueous geochemistry. Review in Mineralogy & Geochemistry 23:177e260

    Google Scholar 

  • de Brouwer JD, Wolfstein K, Ruddy GK, Jones TER, Stal LJ (2005) Biogenic stabilization of intertidal sediments: The importance of extracellular polymeric substances produced by benthic diatoms. Microbial Ecology 49(4):501–512

    Google Scholar 

  • Fang HW, Rodi W (2003) Three-dimensional calculations of flow and suspended sediment transport in the neighborhood of the dam for the Three Gorges Project (TGP) reservoir in the Yangtze River. Journal of Hydraulic Research 41(4):379–394

    Google Scholar 

  • Fang HW, Wang GQ (2000) Three-dimensional mathematical model of suspended-sediment transport. Journal of Hydraulic Engineering - ASCE 126(8):578–592

    Google Scholar 

  • Fang HW, Zhao HM, Shang QQ, Chen MH (2012) Effect of biofilm on the rheological properties of cohesive sediment. Hydrobiologia 694:171–181

    Google Scholar 

  • Fang HW, Chen MH, Chen ZH, Zhao HM, He GJ (2013) Effects of sediment particle morphology on adsorption of phosphorus elements. International Journal of Sediment Research 28:246e253

    Google Scholar 

  • Fang HW, Shang QQ, Chen MH, He GJ (2014) Changes in the critical erosion velocity for sediment colonized by biofilm. Sedimentology 61:648–659

    Google Scholar 

  • Fang HW, Fazeli M, Cheng W, Huang L, Hu HY (2015) Biostabilization and transport of cohesive sediment deposits in the Three Gorges Reservoir. PLoS ONE 10(11):e142673

    Google Scholar 

  • Fang HW, Lai HJ, Cheng W, Huang L, He GJ (2017) Modeling sediment transport with an integrated view of the biofilm effects. Water Resources Research 53. https://doi.org/10.1002/2017wr020628.

  • Fazeli M (2014) Experiment of erosion and deposition for sediment colonized by biofilm. Dissertation, Tsinghua University, Beijing

    Google Scholar 

  • Fettweis M (2008) Uncertainty of excess density and settling velocity of mud flocs derived from in situ measurements. Estuarine, Coastal and Shelf Science 78(2):426–436. https://doi.org/10.1016/j.ecss.2008.01.007

  • Fettweis M, Francken F, Pison V, Ven den Eynde D (2006) Suspended particulate matter dynamics and aggregate sizes in a high turbidity area. Marine Geology 235:63–74

    Google Scholar 

  • Gerbersdorf SU, Jancke T, Westrich B, Paterson DM (2008) Microbial stabilization of riverine sediments by extracellular polymeric substances. Geobiology 6(1):57–69

    Google Scholar 

  • Gerbersdorf SU, Westrich B, Paterson DM (2009) Microbial extracellular polymeric substances (EPS) in fresh water sediments. Microbial Ecology 58(2):334–349

    Google Scholar 

  • Godillot R, Caussade B, Ameziane T, Capblancq J (2001) Interplay between turbulence and periphyton in rough open-channel flow. Journal of Hydraulic Research 39(3):227–239

    Google Scholar 

  • Graba M, Moulin FY, Boulêtreau S, Garabétian F, Kettab A, Eiff O, Sánchez-Pérez JM, Sauvage S (2010) Effect of near-bed turbulence on chronic detachment of epilithic biofilm: Experimental and modeling approaches. Water Resources Research 46:W11531. https://doi.org/10.1029/2009wr008679

  • Huang L, Fang HW, Reible D (2015) Mathematical model for interactions and transport of phosphorus and sediment in the Three Gorges Reservoir. Water Research 85:393–403

    Google Scholar 

  • Huang L, Fang HW, Ni K, Yang WJ, Zhao WH, He GJ, Han Y, Li XC (2018) Distribution and potential risk of heavy metals in sediments of the Three Gorges Reservoir: The relationship to environmental variables. Water 10:1840. https://doi.org/10.3390/w10121840

  • Jepsen R, Roberts J, Lick W (1997) Effects of bulk density on sediment erosion rates. Water, Air, and Soil Pollution 99(1–4):21–31

    Google Scholar 

  • Labiod C, Godillot R, Caussade B (2007) The relationship between stream periphyton dynamics and near-bed turbulence in rough open-channel flow. Ecological Modelling 209(2–4):78–96

    Google Scholar 

  • Lai HJ (2019) Biofilm-coated sediment transport and its potential environmental effects. Dissertation, Tsinghua University, Beijing (in Chinese)

    Google Scholar 

  • Lai HJ, Fang HW, Huang L, He GJ, Reible D (2018) A review on sediment bioflocculation: Dynamics, influencing factors and modeling. Science of the Total Environment 642:1184–1200

    Google Scholar 

  • Liao BQ, Allen DG, Droppo IG, Leppard GG, Liss SN (2001) Surface properties of sludge and their role in bioflocculation and settleability. Water Research 35(2):339–350

    Google Scholar 

  • Liu C, Sui J, Yun HE, Hirshfield F (2013) Changes in runoff and sediment load from major Chinese rivers to the Pacific Ocean over the period 1955–2010. International Journal of Sediment Research 28:486–495

    Google Scholar 

  • Maggi F (2007) Variable fractal dimension: A major control for floc structure and flocculation kinematics of suspended cohesive sediment. Journal of Geophysical Research: Oceans 112. https://doi.org/10.1029/2006jc003951

  • Maggi F (2009) Biological flocculation of suspended particles in nutrient-rich aqueous ecosystems. Journal of Hydrology 376(1):116–125

    Google Scholar 

  • Mahmood K, Yevievich V (1975) Unsteady flow in open channels. Water Resources Publications, Fort Collins, Colorado

    Google Scholar 

  • Majumdar S, Rodi W, Zhu JY (1992) Three-dimensional finite-volume method for incompressible flows with complex boundaries. Journal of Fluids Engineering 114(4):496–503

    Google Scholar 

  • Malarkey J, Baas JH, Hope JA, Aspden RJ, Parsons DR, Peakall J, Paterson DM, Schindler RJ, Ye L, Lichtman ID, Bass SJ, Davies AG, Manning AJ, Thorne PD (2015) The pervasive role of biological cohesion in bedform development. Nature Communications 6:6257. https://doi.org/10.1038/ncomms7257

  • McNeil J, Lick W (2004) Erosion rates and bulk properties of sediments from the Kalamazoo River. Journal of Great Lakes Research 30(3):407–418

    Google Scholar 

  • Nikora VI, Goring DG, Biggs BJF (2002) Some observations of the effects of micro-organisms growing on the bed of an open channel on the turbulence properties. Journal of Fluid Mechanics 450:317–341

    Google Scholar 

  • Papanicolaou ATN, Elhakeem M, Krallis G, Prakash S, Edinger J (2008) Sediment transport modeling review - Current and future developments. Journal of Hydraulic Engineering - ASCE 134(1):1–14. https://doi.org/10.1061/(asce)0733-9429(2008)134:1(1)

  • Rhie CM, Chow WL (1983) Numerical study of the turbulent flow past an airfoil with trailing edge separation. AIAA Journal 21(11):1525–1532

    Google Scholar 

  • Righetti M, Lucarelli C (2007) May the Shields theory be extended to cohesive and adhesive benthic sediments? Journal of Geophysical Research 112:C05039. https://doi.org/10.1029/2006jc003669

  • Rodi W (1993) Turbulence models and their application in hydraulics, CRC Press

    Google Scholar 

  • Shang QQ, Fang HW, Zhao HM, He GJ, Cui ZH (2014) Biofilm effects on size gradation, drag coefficient and settling velocity of sediment particles. International Journal of Sediment Research 29:471–480

    Google Scholar 

  • Shields A (1936) Application of similarity principles and turbulence research to bed-load movement. Hydrodynamics Laboratory, California Institute of Technology, Pasadena

    Google Scholar 

  • Sobeck DC, Higgins MJ (2002) Examination of three theories for mechanisms of cation-induced bioflocculation, Water Research 36(3):527–538

    Google Scholar 

  • Stone M, Emelko MB, Droppo IG, Silins U (2011) Biostabilization and erodibility of cohesive sediment deposits in wildfire-affected streams. Water Research 45(2):521–534

    Google Scholar 

  • Tsinghua University (1996) The report on the sediment scale model experiment of the neighborhood of the dam for Three-Gorge-Project (TGP). Sediment Research Laboratory (in Chinese)

    Google Scholar 

  • van Leussen W (1994) Estuarine macroflocs and their role in fine-grained sediment transport. Dissertation, University of Utrecht, The Netherlands

    Google Scholar 

  • van Rijn LC (1984) Sediment transport, part III: Bed forms and alluvial roughness. Journal of Hydraulic Engineering 110(12):1733–1754

    Google Scholar 

  • Vignaga E, Sloan DM, Luo X, Haynes H, Phoenix VR, Sloan WT (2013) Erosion of biofilm-bound fluvial sediments. Nature Geoscience 6(9):770–774

    Google Scholar 

  • Wang Y, Shen ZY, Niu JF, Liu RM (2009) Adsorption of phosphorus on sediments from the Three-Gorges Reservoir (China) and the relation with sediment compositions. Journal of Hazardous Materials 162:92e98

    Google Scholar 

  • Watanabe R, Yamasaki K, Kusuda T (2006) Experimental study on the effect of biofilm for bed mud erosion in annular flume. Proceedings of Hydraulic Engineering 50:1315–1320

    Google Scholar 

  • Winterwerp JC (1998) A simple model for turbulence induced flocculation of cohesive sediment. Journal of Hydraulic Research 36(3):309–326

    Google Scholar 

  • Wu WM, Rodi W, Wenka T (2000) 3D numerical modeling of flow and sediment transport in open channels. Journal of Hydraulic Engineering 126(1):4–15

    Google Scholar 

  • Yalin MS (1992) River mechanics. Pergamon, Oxford, UK

    Google Scholar 

  • Yallop ML, Paterson DM, Wellsbury P (2000) Interrelationships between rates of microbial production, exopolymer production, microbial biomass, and sediment stability in biofilms of intertidal sediments. Microbial Ecology 39(2):116–127

    Google Scholar 

  • Zhao HM, Fang HW, Wang CH, Chi CQ (2015) Numerical modelling of bio-flocculated sediment transport. Journal of Hydraulic Engineering 46(11):1290–129 (in Chinese)

    Google Scholar 

  • Zhu J (1992) An introduction and guide to the computer program FAST-3D. Report No. 691, Institute for Hydromechanics, University of Karlsruhe

    Google Scholar 

Download references

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Correspondence to Hongwei Fang .

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Fang, H. et al. (2020). Numerical Simulation of Bio-sediment Transport. In: Mechanics of Bio-Sediment Transport. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-662-61158-6_6

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