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The Tree of Life

From the Root to the Crown

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Where Do We Come From?
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Abstract

Like the oak tree Walt Whitman saw in Louisiana, the Tree of Life, the community of all living forms on this planet, both extant and extinct, stands alone. There may be trees of life on other planets in the universe and saplings of different trees may once have flourished on this planet; if they did, however, our own Tree of Life must have smothered them all. It soared above them billions of years ago, sank its roots deep into the fertile soil and furcated at an early stage into three beamy limbs, each of which ramified zillions of times over, giving forth to progressively thinner branches that produced a magnificent crown. The extant species are leaves on the terminal branches and like all leaves, they will one day be shed, only to be replaced by new ones on the most recently branched twigs. As on a live oak, every leaf on the Tree of Life is connected to all the other leaves through the pattern of growth — the twigs, the branches, the stem, and the roots. In contrast to a genuine live oak, however, the leaves on the Tree of Life are only connected by imaginary branches. The only real parts of the Tree of Life are the living individuals comprising the species, while the twigs, branches, and so forth are mental constructs conjured up to depict the presumed genealogical relationships among the individual species and groups of species. In other words, the Tree of Life is not a true arbre but a pedigree in the shape of a tree. In a pedigree, only the individuals correspond to reality, while the interconnecting lines designate relationships reconstructed from the historical record.

I saw in Louisiana a live-oak growing, All alone stood it and the moss hung down from the branches, Without any companion it grew there uttering joyous leaves of dark green, And its look, rude, unbending, lusty, made me think of myself. Walt Whitman: Leaves of Grass

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Sources and Further Reading

Sources

  • Creti, R., Ceccarelli, E., Bocchetta, M., Sanangelantoni, A.M., Tiboni, O., Palm, P. and Cammarano, P. Evolution of translational elongation factor (EF) sequences: reliability of global phylogenies inferred from EF-ia(Tu) and EF-2 (G) proteins. Proc. Natl. Acad. Sci. USA 91:3255–3259,1994

    Google Scholar 

  • Hacker, J., Blum-Oehler, G., Muhldorfer, I. and Tschape, H. Pathogenicity islands of virulent bacteria: structure, function and impact on microbial evolution. Mol. Microbiol. 23: 1089–1097, 1997

    Article  PubMed  CAS  Google Scholar 

  • Iwabe, N., Kuma, K.-I., Hasegawa, M., Osawa, S. and Miyata, T. Evolutionary relationship of archaebacteria, eubacteria, and eukaryotes inferred from phylogenetic trees of duplicated genes. Proc. Natl. Acad. Sci. USA 86:9355-9359,1989

    Google Scholar 

  • Kroes, I., Lepp, P. and Relman, D. Bacterial diversity within the human subgingival crevice. Proc. Natl. Acad. Sci. USA 96: 14547–14552, 1999

    Article  PubMed  CAS  Google Scholar 

  • Lawrence, J.G. and Ochman, H. Molecular archaeology of the Escherichia coli genome. Proc. Natl. Acad. Sci. USA 95:9413-9417,1998

    Google Scholar 

  • Pace, N.R. A molecular view of microbial diversity and the biosphere. Science 276: 734–740, 1997

    Article  PubMed  CAS  Google Scholar 

  • Suau, A., Bonnet, R., Sutren, M., Godon, J., Gibson, G., Collins, M. and Dore, J. Direct analysis of genes encoding 16S rRNA from complex communities reveals many novel molecular species within the human gut. Appl. Environ. Microbiol. 65: 4799–4807, 1999

    PubMed  CAS  Google Scholar 

  • Wheelis, M.L., Kandler, O. and Woese, C.R. On the nature of global classification. Proc. Natl. Acad. Sci. USA 892, 930–2934, 1992

    Google Scholar 

  • Woese, C.R. and Fox, G.E. Phylogenetic structure of the prokaryotic domains: The primary kingdoms. Proc. Natl. Acad. Sci. USA 74: 5088–5090, 1977

    Article  PubMed  CAS  Google Scholar 

  • Woese, C.R. Whither microbiology? Phylogenetic trees. Curr. Biol. 6x060–1063,1996

    Google Scholar 

  • Woese, C.R., Kandler, O. and Wheels, M.L. Towards a natural system of organisms: Proposal for the domains Archaea, Bacteria, and Eucarya. Proc. Natl. Acad. Sci. USA 87: 4576–4579, 1990

    Article  PubMed  CAS  Google Scholar 

Further Reading

  • Andersson, S.G.E. and Kurland, C.G. Origins of mitochondria and hydrogenosomes. Curr. Op. Microbiol. 2: 535–541, 1999

    CAS  Google Scholar 

  • de la Cruz, F. and Davie, J. Horizontal gene transfer and the origin of species: lessons from bacteria. Trends Microbiol. 128: 128–133, 2000

    Article  Google Scholar 

  • Doolittle, W.F. Phylogenetic classification and the universal tree. Science 284:2124–2128, 2000 Doolittle, W.F. Uprooting the Tree of Life. Sci. Am. Feb.: 72–77, 2000

    Google Scholar 

  • Doolittle, W.F. You are what you eat: a gene transfer ratchet could account for bacterial genes in eukaryotic nuclear genomes. Trends Genet. 14: 307–311, 1998

    Article  PubMed  CAS  Google Scholar 

  • Embley, T.M. and Hirt, R.P. Early branching eukaryotes? Curr. Op. Genet. Devel. 8: 624–629, 1998

    Article  CAS  Google Scholar 

  • Fortere, P. and Philippe, H. Where is the root of the universal tree of life? BioEssays 21: 871–879, 1999

    Article  Google Scholar 

  • Gray, M.W. Evolution of organellar genomes. Curr. Op. Genet. Dev. 9: 678–687, 1999

    Article  PubMed  CAS  Google Scholar 

  • Gray, M.W., Burger, G. and Lang, B.F. Mitochondrial evolution. Science 283: 1476–1481, 1999

    Article  PubMed  CAS  Google Scholar 

  • Guttman, D.S. Recombination and clonality in natural populations of Escherichia coli. Trends Ecol. Evol. 12: 16–22, 1997

    Article  CAS  Google Scholar 

  • Lawrence, J.G. Gene transfer, speciation, and the evolution of bacterial genomes. Curr. Op. Microbiol. 2: 519–523, 1999

    Article  CAS  Google Scholar 

  • Madigan, M.T. and Marrs, B.L. Extremophiles. Sci. Am. April: 66–71, 1997

    Google Scholar 

  • Madigan, M.T., Martinko, J.M. and Parker, J. Brock Biology of Microorganisms. 8th edn. Prentice Hall International, Upper Saddle River, NJ 1997

    Google Scholar 

  • Martin, W. Mosaic bacterial chromosomes: a challenge en route to a tree of genomes. BioEssays 21: 99104, 1999

    Article  Google Scholar 

  • Recchia, G.D. and Hall, R.M. Origins of the mobile gene cassettes found in integrons. Trends Microbiol. 5: 389–394, 1997

    Article  PubMed  CAS  Google Scholar 

  • Sogin, M.L. Early evolution and the origin of eukaryotes. Curr. Op. Genet. Dev. 1: 457–463, 1991

    Article  PubMed  CAS  Google Scholar 

  • Sogin, M.L. History assignment: when was the mitochondrion founded? Curr. Opin. Genet. Dev. 7: 792–799, 1997

    Article  PubMed  CAS  Google Scholar 

  • Sogin, M.L. Organelle origins: Energy-producing symbionts in early eukaryotes? Curr. Biol. 7:R315–R317,1997

    Google Scholar 

  • Stephens, C. Intimate strangers. Curr. Biol. 10: R272 - R275, 2000

    CAS  Google Scholar 

  • Whitman, W.B., Coleman, D.C. and Wiebe, W.J. Prokaryotes: the unseen majority. Proc. Natl. Acad. Sci. USA 95: 6578–6583, 1998

    Article  PubMed  CAS  Google Scholar 

  • Woese, C.R. Interpreting the universal phylogenetic tree. Proc. Natl. Acad. Sci. USA 978392–8396, 2000

    Google Scholar 

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© 2002 Springer-Verlag Berlin Heidelberg

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Klein, J., Takahata, N. (2002). The Tree of Life. In: Where Do We Come From?. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-662-04847-4_6

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  • DOI: https://doi.org/10.1007/978-3-662-04847-4_6

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-642-07645-9

  • Online ISBN: 978-3-662-04847-4

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