Skip to main content

Theoretical Chemistry as Part of the Interdisciplinary Approach to Rational Drug Design

  • Conference paper
Book cover Computer Aided Drug Design in Industrial Research

Part of the book series: Ernst Schering Research Foundation Workshop ((SCHERING FOUND,volume 15))

  • 92 Accesses

Abstract

The early days of applied computational chemistry were characterized by two extreme attitudes, best represented by E. Clementi’ s enthusiastic statement in 1973 “We can calculate everything!” and C. Coulson’s reply “Give us insight not numbers!” A further decade was needed to convincingly demonstrate that computational methods can contribute significantly to real problems in organic chemistry. Theoretical methods now provide an invaluable tool to rationalize many aspects of chemical reactivity. As a consequence of the enormous developments in hardware and software, quantum mechanical calculations with a fairly high degree of sophistication can now be applied relatively easy even to series of medium-sized organic molecules such as steroids. For drug design the developments in computer graphics certainly played the decisive role to visualize molecular properties and to communicate theoretical results to the experimentalists. The potential of molecular modeling techniques as an inspiring tool to create new and unconventional ideas has now widely been recognized The contributions from computational chemistry can guide a drug finding process into areas of new (lead) structures. However, no one discipline ever produces a drug, so computational chemists cannot either. Among other areas such as synthetic chemistry, pharmacology, and biology, computational chemistry is one part of the interdisciplinary approach in the early stages of developing a drug.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 39.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 54.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  • Alper J (1994) Drug discovery on the assembly line. Science 264: 1399–1401

    Article  PubMed  CAS  Google Scholar 

  • Armstrong RA, Jones RL, MacDermot J, Wilson NH (1986) Prostaglandin en- doperoxide analogues which are both thromboxane receptor agonists and prostacyclin mimetics. Br J Pharmacol 87: 543–551

    Article  PubMed  CAS  Google Scholar 

  • Deisenhofer J, Epp O, Miki K, Huber R, Michel H (1985) Structure of the protein subunits in the photosynthetic reaction centre of Rhodopseudomonas viridis at 3 A resolution. Nature 318: 618–624

    Article  PubMed  CAS  Google Scholar 

  • Egner U, Hoyer G-A, Saenger W (1993) Modeling and energy minimization studies on the herbicide binding protein ( D1) in photosystem II of plants. Biochim Biophys Acta 1142: 106–114

    Google Scholar 

  • Franke R (1984) Theoretical drug design methods. Elsevier, Amsterdam Gallop MA, Barrett RW, Dower WJ, Fodor SPA, Gordon EM (1994) Applica-tions of combinatorial technologies to drug discovery 1. Background and peptide combinatorial libraries. J Med Chem 37: 1233–1251

    Google Scholar 

  • Gunsteren WF van, Berendsen HJC (1990) Computer simulation of molecular dynamics: methodology, applications, and perspectives in chemistry. Angew Chem Int Ed Eng129: 992–1023

    Google Scholar 

  • Gunsteren WF van, Mark AE (1992) On the interpretation of biochemical data by molecular dynamics computer simulation. Eur J Biochem 204: 947–961

    Article  Google Scholar 

  • Gryglewski RJ, Stock G (eds) (1987) Prostacyclin and its stable analogue ilo-prost. Springer, Berlin Heidelberg New York

    Google Scholar 

  • Johnson MA, Maggiora GM (eds) (1990) Concepts and applications of molecular similarity. Wiley, New York

    Google Scholar 

  • Lybrand TP (1990) Computer simulation of biomolecular systems using molecular dynamics and free energy perturbation methods. In: Lipkowitz KB, Boyd DB (eds) Reviews in computational chemistry. VCH, New York, pp 295–320

    Chapter  Google Scholar 

  • Marshall GR, Barry CD, Bosshard HE, Dammkoehler RA, Dunn DA (1979) The conformational parameter in drug design: the active analog approach. In: Olson EC, Christoffersen RE (eds) Computer-assisted drug design ACS symposium series 112. Am Chem Soc, Washington DC, pp 205–226

    Chapter  Google Scholar 

  • Martin YC (1992) 3D database searching in drug design. J Am Chem Soc 35: 2146–2154

    Google Scholar 

  • Merritt JE, Hallam TJ, Brown AM, Boyfield I, Cooper DG, Hickey DMB, Jaxa-Chamiec AA, Kaumann AJ, Keen M, Kelly E, Kozlowski U, Lynham JA, Moores KE, Murray KJ, MacDermot J, Rink TJ (1991) Octimibate, a potent non-prostanoid inhibitor of platelet aggregation, acts via the prostacyclin receptor. Br J Pharmacol 102: 251–259

    Article  PubMed  CAS  Google Scholar 

  • Michel H, Epp O, Deisenhofer J (1986a) Pigment-protein interactions in the photosynthetic reaction center from Rhodopseudomonas viridis. EMBO J 5: 2445–2451

    PubMed  CAS  Google Scholar 

  • Michel H, Weyer KA, Gruenberg H, Dunger I, Oesterhelt D, Lottspeich F (1986b) The `light’ and `medium’ subunits of the photosynthetic reaction center from Rhodopseudomonas viridis: isolation of the genes, nucleotide and amino acid sequence. EMBO J 5: 1149–1158

    PubMed  CAS  Google Scholar 

  • Primas H, Müller-Herold U (1984) Elementare Quantenchemie Teubner, Stuttgart, p 289

    Google Scholar 

  • Seiler S, Brassard CL, Arnold AJ, Meanwell NA, Fleming JS, Keely SL (1990) Octimibate inhibition of platelet aggregation: stimulation of adenylate cyclase through prostacyclin receptor activation. J Pharmacol Exp Ther 255: 1021–1026

    PubMed  CAS  Google Scholar 

  • Sheridan RP, Nilakantan R, Dixon JS, Venkataraghavan R (1986) The ensemble approach to distance geometry: application to the nicotinic pharmacophore. J Med Chem 29: 899–906

    Article  PubMed  CAS  Google Scholar 

  • Sinning I, Michel H, Mathis P, Rutherford AW (1989) Terbutryn resistance in a purple bacterium can induce sensitivity toward the plant herbicide DCMU. FEBS Lett 256: 192–194

    Article  CAS  Google Scholar 

  • Skuballa W, Schäfer M (1989) Prostacyclin-Derivate. Nachr Chem Techn Lab 37: 584–590

    Article  CAS  Google Scholar 

  • Trebst A (1987) The three-dimensional structure of the herbicide binding niche on the reaction center polypeptides of photosystem II Z. Naturforsch 42c: 742–750

    CAS  Google Scholar 

  • Verlinde CLMJ, Hol WGJ (1994) Structure-based drug design: progress, results and challenges. Structure 2: 577–587

    Article  PubMed  CAS  Google Scholar 

Download references

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 1995 Springer-Verlag Berlin Heidelberg

About this paper

Cite this paper

Eckle, E., Heinrich, N. (1995). Theoretical Chemistry as Part of the Interdisciplinary Approach to Rational Drug Design. In: Herrmann, E.C., Franke, R. (eds) Computer Aided Drug Design in Industrial Research. Ernst Schering Research Foundation Workshop, vol 15. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-662-03141-4_12

Download citation

  • DOI: https://doi.org/10.1007/978-3-662-03141-4_12

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-662-03143-8

  • Online ISBN: 978-3-662-03141-4

  • eBook Packages: Springer Book Archive

Publish with us

Policies and ethics