Abstract
The polymerase chain reaction (PCR) represents the most common and widespread method for the direct amplification of specific sequences of nucleic acid target molecules. The basic reaction is comprised of three steps:
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1.
Denaturation of the target DNA
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2.
Annealing of sequence specific primers
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3.
Template-specific elongation of these primers with a DNA polymerase and desoxynucleotides
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References
Kessler C (1991) The digoxigenin: anti-digoxigenin (DIG) technology — a survey on the concept and realization of a novel bioanalytical indicator system. Mol Cell Probes 5: 161–205
Lanzillo JJ (1991) chemiluminescent nucleic acid detection with digoxigenin-labeled probes: a model system with probes for angiotensin converting enzyme which detect less than one attomole of target DNA. Anal Biochem 194:45–53
Levenson C, Chu-an, Chang (1990) Nonisotopically labeled probes and primers In: Innis MA et al. (eds) PCR protocols, Academic Press, Inc, London
Lion T, Haas OA (1990) Nonradioactive labeling of probe with digoxigenin by polymerase chain reaction. Anal Biochem 188, 335–337
Mühlegger K, Huber E, von der Eltz H, Rüger R, Kessler C (1990) Nonradioactive labeling and detection of nucleic acids: IV. Synthesis and properties of the nucleotide compounds of the digoxigenin system and of photodigoxigenin. Biol Chem Hoppe-Seyler 371: 953–965
Mullis KB, Faloona FA, Scharf SJ, Saiki RK, Horn GT, Erlich HA (1986) Specific enzymatic amplification of DNA in vitro: the polymerase chain reaction. Cold Spring Harbor Symp Quant Biol 51: 263–273
Rüger R, Höltke HJ, Sagner G, Seibl R, Kessler C (1990) Rapid labeling methods using the DIG-system: incorporation of digoxigenin in PC reactions and labeling of nucleic acids with photodigoxigenin. Fresenius’ Z Anal Chem 337: 114
Rüger R, Höltke H-J, Reischl U, Sagner G, Kessler C (1991) Labeling of specific DNA sequences with digoxigenin during polymerase chain reaction. In: Rolfs A et al. (ed) PCR Topics, Springer-Verlag, Berlin
Saiki R, Scharf S, Faloona F, Mullis KB, Horn GT, Erlich HA, Arnheim N (1985) Enzymatic amplification of (3-globin genomic sequences and restriction site analysis for diagnosis of sickle cell anemia. Science 230: 1350–1354
Saiki RK, Gelfand DH, Stoffel S, Scharf SJ, Higuchi R, Horn GT, Mullis KB, Erlich HA (1988) Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase. Science 239: 487–491
Saiki RK, Scharf S, Falcona F, Mullis K, Horn GT, Erlich HA, Arnheim N (1985) Enzymatic amplification of beta-globin genomic sequences and restriction site analysis for diagnosis of sickle cell anemia. Science 230: 1350
Guatelli JC, Whitfield KM, Kwoh DY, Barringer KJ, Richman DD, Gingeras TR (1990) Isothermal, in vitro amplification of nucleic acids by multienzyme reaction modeled after retroviral replication. Proc Natl Acad Sci USA 87: 1874
Wu DY, Wallace RB (1989) The ligation amplification reaction ( LAR) — amplification of specific DNA sequences using sequential rounds of template-dependent ligation. Genomics 4: 560
Barringer K, Orgel L, Wahl G (1990) Blunt-end and single-stranded ligations by E. coli ligase: influence on an in vitro amplification scheme. Gene 89: 117
Saiki RK, Bugawan TL, Horn GT, Mullis KB, Erlich HA (1986) Analysis of enzymatically amplified beta-globin and HLA-DQ alpha DNA with allele-specific oligonucleotide probes. Nature (London) 324: 163
Chebab FF, Doherty M, Cai S, Kan YW, Cooper S, Rubin EM (1987) Detection of sickel cell anemia and thalassemia. Nature (London) 329: 293
Orita M, Iwahara H, Kanazawa H, Hayashi K, Sekiya T (1989) Detection of polymorphisms of human DNA by gel electrophoresis as single-strand conformation polymorphisms. Proc Natl Acad Sci USA 86: 2766
Landegren U, Kaiser R, Sanders J, Hood L (1988) A ligase-mediated gene detection technique. Science 241: 1077
Wu DY, Nozari G, Schold, Conner BJ, Wallace RB (1988) Direct analysis of single nucleotide variation in human DNA and RNA using in situ dot hybridizing synthetic oligonucleotide probes. Nucleic Acids Res 16: 8723
Alves AM, Can FJ (1988) Dot-blot detection of point mutations with adjacently hybridizing synthetic oligonucleotide probes. Nucleic Acids Res 16: 8723
Eisenach KD, Cave MD, Bates JH, Crawford JT (1990) Polymerase chain reaction amplification of a repetitive DNA sequence specific for Mycobacterium tuberculosis. J Infectious Diseases 161: 977–981
Walker GT, Little MC, Nadeau JG, Shank DD (1992) Isothermal in vitro amplification of DNA by a restriction enzyme/DNA polymerase system. Proc Nat Acad Sci USA, 89: 392–396
Walker GT, Fraiser MS, Schram JL, Little MC, Nadeau JG, Malinowski DP (1992) Strand displacement amplification — an isothermal, in vitro DNA amplification technique. Nucleic Acids Res. 20: 1692–1696
Backman KC, Wang C-NJ (1989) Method for detecting a target nucleic acid sequence. Eur Pat Appl, 0 320 308
Barany F (1991) Genetic disease detection and DNA amplification using cloned thermostable ligase. Proc Natl Acad Sci USA 88: 189–193
Barker DG, Johnson AL, & Johnson LH (1985) An improved assay for DNA ligase reveals temperature-sensitive activity in cdc9 mutants of Saccharomyces cerevisiae. Mol Gen Genet 200: 458–462
Nickerson DA, Kaiser R, Lappin S, Stewart J, Hood L, Landegren U (1990) Automated DNA diagnostics using an ELISA-based oligonucleotide ligation assay. Proc Natl Acad Sci USA 87: 8923–8927
Orgel LE (1989) Ligase based amplification method. World Intellectual Property Organization, WO 89 /09835
Richards RM, Jones T (1989) Method and reagents for detecting nucleic acid sequences. PCT Int Appl WO 89 /12696
Royer GP, Cruickshank KA, Morrison LE (1989) Template-directed photoligation. Eur Pat Appl 0 324 616
Shimer Jr. GH, Backman KC (1992) Ligase chain reaction, in methods in molecular biology volume; modern bacteriology methods. In: Howard JJ, Walker JM (eds) Humana Press, USA, in press
Wallace BR (1989) Method of amplifying and detecting nucleic acid sequences. Eur Pat Appl, 0 336 731
Wu DY, Wallace RB (1989) The ligation amplification reaction (LAR): Amplification of specific DNA sequences using sequential rounds of template-dependent ligation. Genomics 4: 560–569
Barry T, Gennon F (1991) Direct genomic DNA amplification from autoclaved infectious microorganisms using PCR technology. PCR Meth Appl 1: 75
Bej AK, Mahbubani MH, Miller R, DiCesare JL, Haff L, Atlas RM (1990) Detection of coliform bacteria in water by polymerase chain reaction and gene probes. Appl Environ Microbiol 56: 307–314
Bej AK, Mahbubani MH, DiCesare JL, Atlas RM (1991) Polymerase chain reaction-gene probe detection of microorganisms by using filter-concentrated samples. Appl Environ Microbiol 57: 3529–3534
Böddinghaus B, Wolters J, Heikens W, Böttger EC (1990) Phylogenetic analysis and identification of different serovars of Mycobacterium intracellulare at the molecular level. FEMS Microbiol Lett 70: 197–204
Böttger EC (1990) Rapid determination of bacterial ribosomal RNA sequences by direct sequencing of enzymatically amplified DNA. FEMS Microbiol Lett 65: 171–176
Bollet C, Gevaudan MJ, de Lambarellie X, Zandotti C, de Micco P (1991) A simple method for the isolation of chromosomal DNA from Gram positive or acid-fast bacteria. Nucleic Acids Res 19: 1955
Giovannoni SJ, De Long EF, Schmidt TM, Pace NR (1990) Tangential flow filtration and preliminary phylogenetic analysis of marine picoplankton. Appl Environ Microbiol 56: 2572–2575
Hon H, Osawa S (1979) Evolutionary change in 55 rRNA secondary structure and a phylogenetic tree of 54 55 rRNA species. Proc Natl Acad Sci USA 76: 381–385
Ibrahim A, Liesack W, Stackebrandt E (1992) Polymerase chain reaction — gene probe detection system exclusive to pathogenic strains of Yersinia enterocolitica. J Clin Microbiology 30: 1942–1947
Johnson JL (1985a) Determination of DNA base composition. Meth Microbiol 18:1–31 Johnson JL (1985b) DNA reassociation of RNA hybridization of bacterial nucleic acids. Meth Microbiol 18: 33–74
Johnson JL (1991) Isolation and purification of nucleic acids. In: Stackebrandt E, Goodfellow M (eds) Nucleic Acid Techniques in Bacterial Systematics, John Wiley & Sons, Chichester, pp 1–20
Kirby KS (1964) Isolation and fractionation of nucleic acids. Progr Nucl Acid Res 3: 1–31
Lane DJ (1991) 16S/23S rRNA Sequencing. In: Stackebrandt E, Goodfellow M (eds) Nucleic Acid Techniques in Bacterial Systematics, Wiley & Sons, Chichester, pp 115–176
Liesack W, Stackebrandt E (1992) Occurence of novel types of bacteria as revealed by analysis of the genetic material isolated from an Australian terrestrial environment. J Bacteriol 174: 5072–5078
Marmur J (1961) A procedure for the isolation of deoxyribonucleic acid from microorganisms. J Mol Biol 3: 208–218
Ogram A, Sayler GS, Barkay T (1987) The extraction and purification of microbial DNA from sediments. J Microbiol Meth 7: 57–66
Olsen GJ, Lane DJ, Giovannoni SJ, Pace NR (1986) Microbial ecology and evolution: A ribosomal RNA approach. Ann Rev Microbiol 40: 337–365
Owen RJ, Pitcher D (1985) Current methods for estimating DNA base composition and levels of DNA-DNA hybridization. In: Goodfellow M, Minnikin DE (eds) Chemical methods in bacterial systematics, Academic Press, London, p 67–93
Paul JH, Cazares L, Thurmond J (1990) Amplification of the rbcL gene from dissolved and particulate DNA from aquatic environments. Appl Environ Microbiol 56: 1963–1966
Pillai SD, Josephson KL, Bailey RL, Gerba CP, Pepper IL (1991) Rapid method for processing soil samples for polymerase chain reaction amplification of specific gene sequences. Appl Environ Microbiol 57: 2283–2286
Sogin ML (1990) Amplification of ribosomal RNA genes for molecular evolution studies. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ (eds) PCR Protocols, Academic Press, San Diego, pp 307–314
Sommerville CC, Knight IT, Straube WL, Colwell RR (1989) Simple, rapid method for direct isolation of nucleic acids from aquatic environments. Appl Environ Microbiol 55: 548–554
Stackebrandt E, Charfreitag 0 (1990) Partial 16S rRNA primary structure of five Actinomyces species: phylogenetic implications and development of an Actinomyces israelii-specific oligonucleotide probe. J Gen Microbiol 136: 37–43
Steffan RJ, Goksoyr J, Bej AK, Atlas RM (1988) Recovery of DNA from soils and sediments. Appl Environ Microbiol 54: 2908–2915
Tsai Y-L, Olson BH (1992) Detection of low numbers of bacterial cells in soils and sediments by polymerase chain reaction. Appl Environ Microbiol 58: 754–757
Weisburg WG, Barns SM, Pelletier DA, Lane DA (1991) 16S ribosomal DNA amplification for phylogenetic study. J Bacteriol 173: 697–703
White TJ, Bruns T, Lee S, Taylor J (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ (eds) PCR protocols, Academic Press, San Diego, pp 315–322
Wisotzkey JD, Jurtshuk Jr P, Fox GE (1990) PCR amplification of 16S rDNA from lyophilized cell cultures facilitates studies in molecular systematics. Curr Microbiol 21: 325–327
Woese CR, Fox GE (1977) Phylogenetic structure of the prokaryotic domain: the primary kingdoms. Proc Natl Acad Sci USA 74: 5088–5090
Woods S, Cole ST (1989) A rapid method for the detection of potentially viable Mycobacterium leprae in human biopsies: a novel application of PCR. FEMS Microbiology Letters 65: 305–310
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Rüger, R. et al. (1992). Enhanced Signal Generation by Target Amplification. In: Kessler, C. (eds) Nonradioactive Labeling and Detection of Biomolecules. Springer Laboratory. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-662-00144-8_16
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DOI: https://doi.org/10.1007/978-3-662-00144-8_16
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