Skip to main content
SpringerLink
Log in

Approaches to the Genetic Mapping of Pea

  • Chapter
Vegetables and Vegetable Products

Part of the book series: Modern Methods of Plant Analysis ((MOLMETHPLANT,volume 16))

Abstract

Genetics is a subject rich in theory, and is powerfully predictive. Genetic maps have been constructed for many organisms, and some maps have been in existence for more than 70 years. In pea, the cosegregation of allelic types had been reported, and called ‘gametic coupling’, before the term ‘linkage’ had universal acceptance (deVilmorin and Bateson 1911). The obvious questions thus arise as to why anyone should write about this subject as a ‘modern method’, and what insight can be gained from genetic mapping in pea or any other crop.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Log in via an institution
Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 84.99
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 109.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  • Allard RW (1956) Formulas and tables to facilitate the calculation of recombination values in heredity. Hilgardia 24:235–278

    Google Scholar 

  • Barone A, Ritter E, Schachtschabel U, Debener T, Salamini F, Gebhardt C (1990) Localization by restriction fragment length polymorphism mapping in potato of a major dominant gene conferring resistance to the potato cyst nematode Globodera rostochiensis. Mol Gen Genet 224:177–182

    PubMed  CAS  Google Scholar 

  • Beavis WD, Grant D (1991) A linkage map based on information from four F2 populations of maize (Zea mays L.). Theor Appl Genet 82:636–644

    CAS  Google Scholar 

  • Beckmann JS, Soller M (1983) Restriction fragment length polymorphisms in genetic improvement: methodologies, mapping and costs. Theor Appl Genet 67:35–43

    Google Scholar 

  • Beckmann JS, Soller M (1986) Restriction fragment length polymorphisms in plant improvement. Oxford Surv Plant Mol Cell Biol 3:196–250

    CAS  Google Scholar 

  • Beckmann JS, Soller M (1988) Detection of linkage between marker loci and loci affecting quantitative traits in crosses between segregating populations. Theor Appl Genet 76:228–236

    Google Scholar 

  • Bernatzky R, Tanksley SD (1986) Toward a saturated linkage map in tomato based on isozymes and random cDNA sequences. Genetics 112:887–898

    PubMed  CAS  Google Scholar 

  • Blixt S (1972) Mutation genetics in Pisum. Agric Hortic Genet 30:1–293

    Google Scholar 

  • Blixt S (1974) The pea. In: King RC (ed) Handbook of genetics, vol 2. Plenum Press, New York, pp 181–221

    Google Scholar 

  • Bonierbale M, Plaisted R, Tanksley SD (1988) RFLP maps based on a common set of clones reveal modes of chromosomal evolution in potato and tomato. Genetics 120:1095–1103

    PubMed  CAS  Google Scholar 

  • Botchan M, McKenna G, Sharp PA (1973) Cleavage of mouse DNA by a restriction enzyme as a clue to the arrangement of genes. Cold Spring Harbor Symp Quant Biol 38:383–395

    Google Scholar 

  • Botstein D, White RL, Skolnick MH, Davis RW (1980) Construction of a genetic linkage map in man using restriction fragment length polymorphism. Am J Hum Genet 32:314–331

    PubMed  CAS  Google Scholar 

  • Bowen BA, Lee D, Greissen GP, Marks GE, Cullis CA (1988) The ribosomal DNA of Luzulapilosa (L.) Willd, a plant with holocentric chromosomes. Genome 30:915–923

    CAS  Google Scholar 

  • Brennan CA, van Cleve MD, Gumport RI (1986) The effects of base analogue substitutions on the cleavage by EcoRI restriction endonuclease of octadeoxyribo-nucleotides containing modified EcoRI restriction sites. J Biol Chem 261:7270–7278

    PubMed  CAS  Google Scholar 

  • Burr B, Burr FA (1991) Recombinant inbreds for molecular mapping in maize: theoretical and practical considerations. Trend Genet 7:55–60

    CAS  Google Scholar 

  • Burr B, Burr FA, Thompson KH, Albertson MC, Stuber CW (1988) Gene mapping with recombinant inbreds in maize. Genetics 118:519–526

    PubMed  CAS  Google Scholar 

  • Busslinger M, deBoer E, Wright S, Grosveld FG, Flavell RA (1983) The sequence GGCmCGG is resistant to MspI cleavage. Nucl Acid Res 11:3559–3569

    CAS  Google Scholar 

  • Carle GF, Frank M, Olsen MV (1986) Electrophoretic separations of large DNA molecules by periodic inversion of the electric field. Science 232:65–68

    PubMed  CAS  Google Scholar 

  • Casey R, Domoney C, Ellis N (1986) Legume storage proteins and their genes. Oxford Surv Plant Mol Cell Biol 3:1–95

    CAS  Google Scholar 

  • Church GM, Gilbert W (1984) Genomic sequencing. Proc Natl Acad Sci USA 81:1991–1995

    PubMed  CAS  Google Scholar 

  • Cowen NM (1988) The use of replicated progenies in marker-based mapping of QTLs. Theor Appl Genet 75:857–862

    Google Scholar 

  • Craig AG, Nizetie D, Hoheisel JD, Zehetner G, Lehrach H (1990) Ordering of cosmid clones covering the herpes simplex virus type I (HSV-I) genome: a test case for fingerprinting by hybridisation. Nucl Acid Res 18:2653–2660

    CAS  Google Scholar 

  • Darlington CD (1965) Cytology. Churchill, London

    Google Scholar 

  • Dekkers JCM, Dentine MR (1991) Quantitative genetic variance associated with chromosomal markers in segregating populations. Theor Appl Genet 81:212–220

    Google Scholar 

  • Dellaporta SL, Wood J, Hicks JB (1983) A plant DNA minipreparation, version II. Plant Mol Biol Rep 1:19–21

    CAS  Google Scholar 

  • Diers BW, Keim P, Fehr WR, Shoemaker RC (1992) RFLP analysis of soybean seed protein and oil content. Theor Appl Genet 83:608–612

    Google Scholar 

  • Dirlewanger E (1991) Recherche de marqueurs moleculaires lies a des genes de resistance a quatre maladies du pois (Pisum sativum L.): fusariose oidium, anthracnose et mosaique commune du pois. Doctorate Thesis, Université de Paris-sud, Centre d’Orsay

    Google Scholar 

  • Duggleby RG (1981) A nonlinear regression program for small computers. Anal Biochem 110:9–18

    PubMed  CAS  Google Scholar 

  • Edwards MD, Stubier CW, Wendel JF (1987) Molecular-marker-facilitated investigations of quantitative-trait loci in maize. I. Numbers, genomic distribution and types of gene action. Genetics 116:113–125

    PubMed  CAS  Google Scholar 

  • Ellis THN (1986) Restriction fragment length polymorphism markers in relation to quantitative traits. Theor Appl Genet 72:1–2

    Google Scholar 

  • Ellis THN, Davies DR, Castleton JA, Bedford ID (1984) The organization and genetics of rDNA length variants in peas. Chromosoma 91:74–81

    CAS  Google Scholar 

  • Ellis THN, Domoney C, Castleton J, Cleary W, Davies DR (1986) Vicilin genes of Pisum. Mol Gen Genet 205:164–169

    CAS  Google Scholar 

  • Ellis THN, Lee D, Thomas CM, Simpson PR, Cleary WG, Newman M-A, Burcham KWG (1988) 5S rRNA genes in Pisum: sequence, long range and chromosomal organization. Mol Gen Genet 214:333–342

    PubMed  CAS  Google Scholar 

  • Ellis THN, Turner L, Hellens RP, Lee D, Harker CL, Enard C, Domoney C, Davies DR (1992) Linkage maps in pea. Genetics 130:649–663

    PubMed  CAS  Google Scholar 

  • Emanuel JR (1991) Simple and efficient system for synthesis of non-radioactive nucleic acid hybridization probes using PCR. Nucl Acid Res 19:2790

    CAS  Google Scholar 

  • Epplen JT (1988) On simple repeated GAT CA sequences in animal genomes: a critical reappraisal. J Hered 79:409–417

    PubMed  CAS  Google Scholar 

  • Erlich HA (1989) PCR technology: principles and appHcations for DNA amplification. Stockton Press, New York

    Google Scholar 

  • Feinberg AP, Vogelstein B (1984) A technique for radiolabelling DNA restriction endo-nuclease fragments to high specific activity. Anal Biochem 132:6–13

    Google Scholar 

  • Flavell AJ, Smith DB, Kumar A (1992) Extreme heterogeneity of Tyl-copia group retrotransposons in plants. Mol Gen Genet 231:233–242

    PubMed  CAS  Google Scholar 

  • Folkeson D (1984) Free segregation between a (3S-7S) interchange and genes within linkage group VII in Pisum sativum. Hereditas 101:227–233

    Google Scholar 

  • Folkeson D (1990) Assignment of linkage segments to chromosomes 3 and 5 in Pisum sativum. Hereditas 112:249–255

    Google Scholar 

  • Frohman MA, Rush MK, Martin GR (1988) Rapid production of full-length cDNAs from rare transcripts: amplification using a single gene-specific oligonucleotide primer. Proc Natl Acad Sci USA 85:8998–9002

    PubMed  CAS  Google Scholar 

  • Gebhardt C, Ritter E, Debener T, Schachtschabel U, Walkemeier B, Uhrig H, Salamini F (1989) RFLP analysis and linkage mapping in Solanum tuberosum. Theor Appl Genet 78:65–75

    Google Scholar 

  • Goldsbrough PB, Ellis THN, Cullis CA (1981) Organisation of the 5S RNA genes in flax. Nucl Acid Res 9:5895–5904

    CAS  Google Scholar 

  • Gruenbaum Y, Naveh-Many T, Cedar H, Razin A (1981) Sequence specificity of methy-lation in higher plant DNA. Nature 292:860–862

    PubMed  CAS  Google Scholar 

  • Haidane JBS, Waddington CH (1931) Inbreeding and linkage. Genetics 16:357–374

    Google Scholar 

  • Harker CL, Ellis THN, Coen ES (1990) Identification and genetic regulation of the chalcone synthase multigene family in pea. Plant Cell 2:185–194

    PubMed  CAS  Google Scholar 

  • Helentjaris T, Slocum M, Wright S, Schaefer A, Nienhuis J (1986) Construction of genetic linkage maps in maize and tomato using restriction fragment length polymorphisms. Theor Appl Genet 72:761–769

    CAS  Google Scholar 

  • Hemleben V, Grierson D, Dertmann H (1977) The use of equilibrium centrifugation in actinomycin-D caseium chloride forte purification of ribosomal DNA. Plant Sci Lett 9:129–135

    CAS  Google Scholar 

  • Innis MA, Gelfand DH, Sninsky JJ, White TJ (1990) PCR protocols: a guide to methods and applications. Academic Press, San Diego

    Google Scholar 

  • Jeffreys AJ, Flavell RA (1977) A physical map of the DNA regions flanking the rabbit beta-globin gene. Cell 12:429–439

    PubMed  CAS  Google Scholar 

  • Jeffreys AJ, Wilson V, Neumann R, Keyte J (1988) Amplification of human minisatellites by the polymerase chain reaction: towards DNA fingerprinting of single cells. Nucl Acid Res 16:10953–10971

    CAS  Google Scholar 

  • Jeffreys AJ, MacLoed A, Tamaki K, Neil DL, Monckton DG (1991) Minisatellite repeat coding as a digital approach to DNA typing. Nature 35:204–209

    Google Scholar 

  • Kirby KS (1965) Isolation and characterization of ribosomal ribonucleic acid. Biochem J 96:266–269

    PubMed  CAS  Google Scholar 

  • Knapp SJ (1991) Using molecular markers to map multiple quantitative trait loci: models for backcross, recombinant inbred and doubled haploid progeny. Theor Appl Genet 81:333–338

    CAS  Google Scholar 

  • Lamprecht H (1942) Genetische Studien an Pisum sativum V. Multiple Allele für Punk tierung der Testa: Fsex-Fs-fs. Hereditas 28:157–164

    Google Scholar 

  • Lamprecht H (1953) New and hitherto known polymeric genes of Pisum. Agric Hortic Genet 11:40–54

    Google Scholar 

  • Lander ES (1988) Mapping complex traits in humans. In: Davies KE (ed) Genome analysis: a practival approach. IRL press, Oxford, pp 171–189

    Google Scholar 

  • Lander ES, Botstein D (1989) Mapping Mendelian factors underlying quantiative traits using RFLP linkage maps. Genetics 121:185–199

    PubMed  CAS  Google Scholar 

  • Lander ES, Green P (1987) Construction of multilocus genetic Hnkage maps in humans. Proc Natl Acad Sci USA 84:2363–2367

    PubMed  CAS  Google Scholar 

  • Lander ES, Green P, Abrahamson J, Barlow A, Daly MJ, Lincoln SE, Newburg L (1987) MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics 1:174–181

    PubMed  CAS  Google Scholar 

  • Landry BS, Kesseli RV, Farrara B, Mitchelmore RW (1987) A genetic map of lettuce (Lactuca sativa L.) with restriction fragment length polymorphism, isozyme, disease resistance and morphological markers. Genetics 116:331–337

    PubMed  CAS  Google Scholar 

  • Laskey RA, Mills AD (1975) Quantitative film detection of 3H and 14C in Polyacrylamide gels by fluorography. Eur J Biochem 56:335–341

    PubMed  CAS  Google Scholar 

  • Lee D, Turner L, Davies DR, Ellis THN (1988) An RFLP marker for rb in pea. Theor Appl Genet 75:362–365

    CAS  Google Scholar 

  • Lee D, Ellis THN, Turner L, Hellens RP, Cleary WG (1990) A copia-like element in Pisum demonstrates the uses of dispersed repeated sequences in genetic analysis. Plant Mol Biol 15:707–722

    PubMed  CAS  Google Scholar 

  • Maheshwari SC, Rashid A, Tyagi AK (1982) Haploids from pollen grains: retrospect and prospect. Am J Bot 69:865–879

    Google Scholar 

  • Maniatis T, Jeffrey A, Kleid DG (1975) Nucleotide sequence of the rightward operator of phage lambda. Proc Natl Sci USA 72:1184–1188

    CAS  Google Scholar 

  • Marmur J (1961) A procedure for isolation of deoxyribonucleic acid from micro-organisms. J Mol Biol 3:208–218

    CAS  Google Scholar 

  • McCouch SR, Kochert G, Yu ZH, Wang ZY, Khush GS, Coffman WR, Tanksley SD (1988) Molecular mapping of rice chromosomes. Theor Appl Genet 76:815–829

    CAS  Google Scholar 

  • McDonell MW, Simon MN, Studier FW (1977) Analysis of restriction fragments of T7 DNA and determination of molecular weights by electrophoresis in neutral and alkaline gels. J Mol Biol 110:119–146

    PubMed  CAS  Google Scholar 

  • Meinkoth J, Wahl G (1984) Hybridization of nucleic acids immobilized on solid supports. Anal Biochem 138:267–284

    PubMed  CAS  Google Scholar 

  • Mendel G (1866) Versuche über Pflanzen-Hybriden. Verh Naturforsch Verein Brünn 4:3–47

    Google Scholar 

  • Mood AM (1940) The distribution theory of runs. Anal Math Stat 11:367–392

    Google Scholar 

  • Morton NE, Andrews V (1989) Map, an expert system for multiple pairwise linkage analysis. Ann Hum Genet 53:263–269

    PubMed  CAS  Google Scholar 

  • Murray MG, Thompson WF (1980) Rapid isolation of high molecular weight plant DNA. Nucl Acid Res 8:4321–4325

    CAS  Google Scholar 

  • Murray MG, Cuellar RE, Thompson WF (1978) DNA sequence organization in the pea genome. Biochemistrs 17:5781–5790

    CAS  Google Scholar 

  • Myers RM, Lumelsky N, Lerman LS, Maniatis T (1985) Detection of single base substitutions in total genomic DNA. Nature 313:495–498

    PubMed  CAS  Google Scholar 

  • Nelson M, McClelland M (1987) The effect of site-specific methylation on restriction-modification enzymes. Nucl Acid Res 15:r219–r230

    CAS  Google Scholar 

  • Oakey R, Tyler-Smith C (1990) Y chromosome DNA haplotyping suggests that most of European and Asian men are descended from one of two males. Genomics 7: 325–330

    PubMed  CAS  Google Scholar 

  • Paterson AH, Lander ES, Hewitt JD, Peterson S, Lincoln SE, Tanksley SD (1988) Resolution of quantivative traits into Mendelian factors by using a complete linkage map of restriction fragment length polymorphisms. Nature 335:721–726

    PubMed  CAS  Google Scholar 

  • Polans NO, Weeden NF, Thompson WF (1986) Distribution, inheritance and linkage relationships of ribosomal DNA spacer length variants in pea. Theor Appl Genet 72:289–295

    CAS  Google Scholar 

  • Richards EJ, Ausubel FM (1988) Isolation of a higher eukaryotic telomere from Ar-abidopsis thaliana. Cell 53:127–136

    PubMed  CAS  Google Scholar 

  • Saiki RK, Scharf S, Faloona F, Mullis KB, Horn GT, Erlich HA, Arnheim N (1985) Enzymatic amplification of ß-globin genomic sequences and restriction site analysis for diagnosis of sickle cell anemia. Science 230:1350–1354

    PubMed  CAS  Google Scholar 

  • Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning, a laboratory manual, 2nd edn. Cold Spring Harbor Press, Cold Spring Harbor

    Google Scholar 

  • Sealey PG, Southern EM (1982) Gel electrophoresis of DNA. In: Rickwood D, Hames BD (eds) Gel electrophoresis of nucleic acids: a practical approach. IRL Press, Oxford

    Google Scholar 

  • Sheffield VC, Cox DR, Lerman LR, Myers RM (1989) Attachment of a 40-base-pair G+C-rich sequence (GC-clamp) to genomic DNA fragments by the polymerase chain reaction results in improved detection of single base changes. Proc Natl Acad Sci USA 86:232–236

    PubMed  CAS  Google Scholar 

  • Simpson SP (1989) Detection of linkage between quantitative trait loci and restriction fragment length polymorphism using inbred lines. Theor Appl Genet 77:815–819

    Google Scholar 

  • Smith GE, Summers MD (1980) The bi-directional transfer of DNA and RNA to nitrocellulose or diazobenzylomethyl-paper. Anal Biochem 109:123–129

    PubMed  CAS  Google Scholar 

  • Snape JW (1981) The use of doubled haploids in plant breeding. In: Broertjes C (ed) Induced variability in plant breeding. Pudoc Po Box 46700 AA Wageningen, The Netherlands, pp 52–58

    Google Scholar 

  • Soller M, Beckmann JS (1983) Genetic polymorphism in varietal identification and genetic improvement. Theor Appl Genet 67:25–33

    Google Scholar 

  • Song KM, Suzuki JY, Slocum MK, Williams PH, Osborn TC (1991) A Unkage map of Brassica rapa (syn. campestris) based on restriction fragment length polymorphism loci. Theor Appl Genet 82:296–304

    CAS  Google Scholar 

  • Southern EM (1971) Effects of sequence divergence on the reassociation properties of repetitive DNAs. Nat New Biol 232:82–83

    PubMed  CAS  Google Scholar 

  • Southern EM (1974) Detection of specific DNA sequences among DNA fragments separated by gel electrophoresis. J Mol Biol 98:503–517

    Google Scholar 

  • Southern EM (1979a) Gel electrophoresis of restriction fragments. Meth Enzymol 68:152–176

    PubMed  CAS  Google Scholar 

  • Southern EM (1979b) Measurement of DNA length by gel electrophoresis. Anal Biochem 100:319–323

    PubMed  CAS  Google Scholar 

  • Stent GS (1985) Thinking in one dimension: the impact of molecular biology on development. Cell 40:1–2

    PubMed  CAS  Google Scholar 

  • Sutton WD, McCallum M (1971) Mismatching and the reassociation rate of mouse satellite DNA. Nature New Biol 232:83–84

    PubMed  CAS  Google Scholar 

  • Tanksley SD, Orton TJ (1983) Isozymes in plant genetics and breeding Elsevier, Amsterdam

    Google Scholar 

  • Tanksley SD, Medina-Filho H, Rick CM (1982) Use of naturally-occurring enzyme variation to detect and map genes controlling quantitative traits in an interspecific backcross of tomato. Heredity 49:11–25

    Google Scholar 

  • Tautz D (1989) Hypervariability of simple sequences as a general source of polymorphic DNA markers. Nucl Acid Res 16:6463–6471

    Google Scholar 

  • Taylor BA (1978) Recombinant inbred strains: use in genetic mapping. In: Morse HC (ed) Origins of inbred mice. Academic Press, New York, pp 423–438

    Google Scholar 

  • de Vilmorin P, Bateson W (1911) A case of gametic coupling in Pisum. Proc R Soc Ser B 84:9–11

    Google Scholar 

  • Waterman MS (1983) Frequencies of restriction sites. Nucl Acid Res 11:8951–8956

    CAS  Google Scholar 

  • Waye JS, Willard HF (1986) Molecular analysis of a deletion polymorphism in alpha satellite of human chromosome 17: evidence for homologous unequal crossing-over and subsequent fixation. Nucl Acid Res 14:6915

    CAS  Google Scholar 

  • Weeden NF, Marx GA (1987) Further genetic analysis and linkage relationships of isozyme loci in the pea. Confirmation of the diploid nature of the genome. J Hered 78:153–159

    Google Scholar 

  • Weeden NF, Wolko B (1990) Linkage map for the garden pea (Pisum sativum). In: O’Brien SJ (ed) Genetic maps. Locus maps of complex genomes, 5th edn. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, pp 6.106–6.112

    Google Scholar 

  • Wijsman EM (1984) Optimizing selection of restriction enzymes in the search for DNA variants. Nucl Acid Res 23:9209–9226

    Google Scholar 

  • Williams JGD, Kubelik AR, Livak KJ, Kafalski A, Tingey SV (1990) DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucl Acid Res 18:6531–6535

    CAS  Google Scholar 

  • Winge Ö (1936) Linkage in Pisum. C R Labor Carlsberg, Copenhagen, Ser Physiol 21: 271–393

    Google Scholar 

Download references

Authors
  1. T. H. N. Ellis
    View author publications

    You can also search for this author in PubMed Google Scholar

Editor information

Editors and Affiliations

  1. Goldberglein 7, 91056, Erlangen, Germany

    Hans Ferdinand Linskens

  2. Department of Viticulture, Enology and Horticulture, Waite Agricultural Research Institute, University of Adelaide, Glen Osmond, SA, 5064, Australia

    John F. Jackson

Rights and permissions

Reprints and permissions

Copyright information

© 1994 Springer-Verlag Berlin Heidelberg

About this chapter

Cite this chapter

Ellis, T.H.N. (1994). Approaches to the Genetic Mapping of Pea. In: Linskens, H.F., Jackson, J.F. (eds) Vegetables and Vegetable Products. Modern Methods of Plant Analysis, vol 16. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-84830-8_6

Download citation

  • DOI: https://doi.org/10.1007/978-3-642-84830-8_6

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-642-84832-2

  • Online ISBN: 978-3-642-84830-8

  • eBook Packages: Springer Book Archive

Publish with us

Policies and ethics

Search

Navigation