Abstract
The control of transcription initiation is central among the mechanisms which regulate gene activity. In E. coli for example the rate of RNA synthesis directed by various promoters can differ by orders of magnitude. Moreover, the activity of an individual promoter may be modulated over a wide range by negatively and/or positively acting regulatory proteins. What are the principles which determine promoter activity and how can this activity be modified by regulatory proteins?
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References
Brunner M (1988) Dimensionalität diffusionsgetriebener Wechselwirkungen DNA bindender Proteine mit ihren spezifischen Erkennungssequenzen. PhD-thesis Universität Heidelberg, FRG
Brunner M, Bujard H (1987) Promoter recognition and promoter strength in the Escherichia coli system. EMBO J 6: 3139–3144
Bujard H (1980) The interaction of E. coli RNA polymerase with promoters. TIBS 5: 274–278
Bujard H, Deuschle U, Kammerer W, Gentz R, Bannwarth W, Stüber D (1985) Promoters of the E. coli system: in vivo strength and the contribution of elements in the transcribed region. In: Calendar R, Gold L (eds) UCLA symposium on sequence specificity in transcription and translation. A. R. Liss, Inc., New York
De Boer HA, Comstock LJ, Vasser M (1983) The tac promoter: A functional hybrid derived from the trp and lac promoters. Proc Natl Acad Sci USA 80: 21–25
De Crombrugghe B, Busby S, Buc H (1984) Cyclic AMP receptor protein: Role in transcription activation. Science 224: 831–838
Deuschle U, Kammer er W, Gentz R, Bujard H (1986) Promoters of Escherichia coli: a hierarchy of in vivo strength indicates alternate structures. EMBO J 5: 2987–2994
Flashner Y, Gralla Jay D (1988) Dual mechanism of repression at a distance in the lac operon. Proc Natl Acad Sci USA 85: 8968–8972
Gentz R, Bujard H (1985) Promoters recognized by Escherichia coli RNA polymerase selected by function: Highly efficient promoters from bacteriophage T5. J Bacteriol 164: 70–77
Graña D, Gardella T, Susskind MM (1988) The effects of mutations in the ant promoter of phage P22 depend on context. Genetics 120: 319–327
Hawley DK, McClure WR (1983) Compilation and analysis of Escherichia coli promoter DNA sequences. Nucleic Acids Res 11: 2237–2255
Inouye S, Inouye M (1985) Up-promoter mutations in the lpp gene of Escherichia coli. Nucleic Acids Res 13: 3101–3110
Kammerer W (1986) Wechselwirkung zwischen E. coli RNA Polymerase und Promotoren: Funktion spezifischer Sequenzen in der Promotorregion. PhD-thesis Universität Heidelberg, FRG
Kammerer W, Deuschle U, Gentz R, Bujard H (1986) Functional dissection of Escherichia coli promoters: information in the transcribed region is involved in late steps of the overall process. EMBO J 5: 2995–3000
Knaus R, Bujard H (1988) PL of coliphage lambda: an alternative solution for an efficient promoter. EMBO J 7: 2919–2923
Krummel B, Chamberlin MJ (1988) E. coli RNA polymerase abortive initiation and elongation complex formation: Roles of the promoter and early transcribed sequences. J Cell Biochem, UCLA Symp. on Mol. and Cell. Biol., p 12D: 140
Lanzer M (1988) Kompetition von Repressor und RNA-Polymerase um DNA-Bindungsorte. PhD-thesis Universität Heidelberg, FRG
Lanzer M, Bujard H (1988) Promoters largely determine the efficiency of repressor action. Proc Natl Acad Sci USA 85: 8973–8977
Malan TP, Kolb A, Buc H, McClure WR (1984) Mechanism of CRP-cAMP activation of lac operon transcription initiation activation of the P1 promoter. J Mol Biol 180: 881–909
McClure WR (1980) Rate limiting steps in RNA chain initiation. Proc Natl Acad Sci USA 77: 5364–5368
Miller J, Ippen K, Scaife J, Beckwith JR (1968) The promoter operator region of the lac operon of Escherichia coli J Mol Biol 38: 413–425
Mulligan ME, Hawley DK, Entriken R, McClure WR (1984) Escherichia coli promoter sequences predict in vitro RNA polymerase selectivity. Nucleic Acids Res 12: 789–800
Ptashne M (1986) A genetic switch. Blackwell Scientific Publications & Cell Press, Cambridge, USA
Rosenberg M, Court D (1979) Regulatory sequences involved in the promotion and termination of RNA transcription. Annu Rev Genet 13: 319–353
Sarmientos P, Cashel M (1983) Carbon starvation and growth rate dependent regulation of the Escherichia coli ribosomal RNA promoters: Differential control of dual promoters. Proc Natl Acad Sci USA 80: 7010–7013
Sasse-Dwight S, Gralla JD (1988) Probing the Escherichia coli glnALG upstream activating mechanism in vivo. Proc Natl Acad Sci USA 85: 8934–8938
Stefano JE, Gralla J (1979) Lac UV5 transcription in vitro. Rate limitation subsequent to formation of an RNA polymerase-DNA complex. Biochemistry 18: 1063–1067
Straney DC, Crothers DM (1987) A stressed intermediate in the formation of stably initiated RNA chains at the Escherichia coli lac UV5 promoter. J Mol Biol 193: 267–278
Youderian P, Bouvier S, Susskind MM (1982) Sequence determinants of promoter activity. Cell 30: 843–853
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Knaus, R., Bujard, H. (1990). Principles Governing the Activity of E. coli Promoters. In: Eckstein, F., Lilley, D.M.J. (eds) Nucleic Acids and Molecular Biology 4. Nucleic Acids and Molecular Biology, vol 4. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-84150-7_7
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DOI: https://doi.org/10.1007/978-3-642-84150-7_7
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