Skip to main content

Untargeted Approaches to the Analysis of Gene Epression in Arbuscular Mycorrhiza: Analyses of Polypeptides (in Vivo and in Vitro) and of Translated mRNA Products

  • Chapter
Mycorrhiza Manual

Part of the book series: Springer Lab Manual ((SLM))

  • 568 Accesses

Abstract

Current gel electrophoretic methods such as native or SDS-PAGE and two-dimensional 2D-PAGE have been widely utilized as untargeted approaches to study proteins in arbuscular mycorrhizas (Dumas et al. 1989; Schellenbaum et al. 1992; Arines et al. 1993; Dumas-Gaudot et al. 1994; Simoneau et al. 1994; Samra et al. 1996). Although 1D-PAGE has been useful to demonstrate differences in polypeptide patterns between uninoculated and several plants inoculated with different AM fungi (Dumas et al. 1989; Schellenbaum et al. 1992; Arines et al. 1993), the low resolution of this technique quickly limited its application in detecting mycorrhiza-specific polypeptides. For this reason, we have adopted 2DPAGE protocols to study modifications in root polypeptide profiles with mycorrhizal development (Tahiri-Alaoui et al. 1991; Dumas-Gaudot et al. 1994; Gianinazzi-Pearson 1995; Samra et al. 1996).

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 74.99
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  • Arines J, Palma JM, Vilarino A (1993) Comparison of protein patterns in non-mycorrhizal and vesicular-arbuscular mycorrhizal roots of red clover. New Phytol 123:763–768

    Article  CAS  Google Scholar 

  • Blum H, Beier H, Gross HJ (1987) Improved silver staining of plant proteins, RNA and DNA in Polyacrylamide gels. Electrophoresis 8:93–99

    Article  CAS  Google Scholar 

  • Bonner WM, Laskey RA (1974) A film detection method for tritium-labelled proteins and nucleic acids in Polyacrylamide gels. Eur J Biochem 46:83–88

    Article  PubMed  CAS  Google Scholar 

  • Bradford MM (1976) A rapid and sensitive method for the quantification of microgram quantities of protein utilizing the principle of protein dye binding. Anal Biochem 72:248–254

    Article  PubMed  CAS  Google Scholar 

  • Cordero MJ, Raventos D, San Segundo B (1992) Induction of PR proteins in germinating maize seeds infected with the fungus Fusarium moniliforme. Physiol Mol Plant Pathol 41:189–200

    Article  CAS  Google Scholar 

  • Delagoutte E, Marciset O, Égly JM, Damerval T (1991) Le microséquençage des protéines: préparation de l’échantillon et utilisations. Biofutur, Le Technoscope 104:3–12

    Google Scholar 

  • Dumas E, Tahiri-Alaoui A, Gianinazzi S, Gianinazzi-Pearson V (1989) Observations on modifications in gene expression with VA endomycorrhiza development in tobacco: qualitative and quantitative changes in protein profiles. In: Nardon P, Gianinazzi-Pearson V, Grenier AM, Margulis L, Smith DC (eds) Endocytobiology IV, 4th int colloq on endocytobiology and symbiosis. INRA, Paris pp 153–157

    Google Scholar 

  • Dumas-Gaudot E, Guillaume P, Tahiri-Alaoui A, Gianinazzi-Pearson V, Gianinazzi S (1994) Changes in polypeptide patterns in tobacco roots colonized by two Glomus species. Mycorrhiza 4:215–221

    Article  CAS  Google Scholar 

  • Dunbar BS (1987) Two-dimensional electrophoresis and immunological techniques. Plenum Press, New York

    Book  Google Scholar 

  • Garcia-Garrido JM, Toro N, Ocampo JA (1993) Presence of specific polypeptides in onion roots colonized by Glomus mosseae. Mycorrhiza 2:175–177

    Article  CAS  Google Scholar 

  • Gianinazzi S, Gianinazzi-Pearson V, Franken P, Dumas-Gaudot E, van Tuinen D, Samra A, Martin-Laurent F, Dassi B (1995) Molecules and genes involved in mycorrhiza functioning. In: Stocchi V, Bonfante P, Nuti M (eds) Biotechnology of Ectomycorrhizae. Molecular Approaches. Plenum Press, New York, pp 67–76

    Chapter  Google Scholar 

  • Gianinazzi-Pearson V (1995) Morphofunctional compatibility in interactions between roots and arbuscular endomycorrhizal fungi: molecular mechanisms, genes and gene expression. In: Kohmoto K, Singh RP, Singh US (eds) Pathogeneis and host-parasite specificity in plant diseases. II. Pergamon Press, Elsevier Science, Oxford, pp 251–263

    Google Scholar 

  • Görg A, Postel W, Weser J, Günther S, Strahler JR, Hanash SM, Somerlot L (1987) Elimination of point streaking on silver-stained two-dimensional gels by addition of iodoacetamide to the equilibration buffer. Electrophoresis 8:122–124

    Article  Google Scholar 

  • Hadwiger LA, Wagoner W (1983) Electrophoretic patterns of pea and Fusarium solani proteins synthesized in vitro or in vivo which characterize the compatible and incompatible interactions. Physiol Plant Pathol 23:153–162

    Article  CAS  Google Scholar 

  • Harnes BD, Rickwood D (1981) Gel electrophoresis of proteins, a practical approach. IRL Press, Oxford

    Google Scholar 

  • Harrison MJ, van Buuren ML (1995) A phosphate transporter from the mycorrhizal fungus Glomus versiforme. Nature 378:626–629

    Article  PubMed  CAS  Google Scholar 

  • Hurkman WJ, Tanaka CK (1987) The effect of salt on the pattern of protein synthesis in barley roots. Plant Physiol 83:517–524

    Article  PubMed  CAS  Google Scholar 

  • Kawakami Y, Ohmori S (1994) Microidentification of N-terminal-blocked amino acid residues of proteins and peptides. Anal Biochem 220:66–72

    Article  PubMed  CAS  Google Scholar 

  • Koiwa H, Sato F, Yamada Y (1994) Characterization of accumulation of tobacco PR-5 proteins by IEF-immunoblot analysis. Plant Cell Physiol 35:821–827

    PubMed  CAS  Google Scholar 

  • Krause A, Broughton WJ (1992) Proteins associated with root-hair deformation and nodule initiation in Vigna unguiculata. Mol Plant-Microbe Interact 5:96–103

    Article  CAS  Google Scholar 

  • Manen JF, Simon P, van Slooten JC, Osteras M, Frutiger S, Hughes GJ (1991) A nodulin specifically expressed in senescent nodules of Winged Bean is a protease inhibitor. Plant Cell 3:259–270

    Article  PubMed  CAS  Google Scholar 

  • Martin F, Lapeyrie F, Tagu D (1997) Altered gene expression during ectomycorrhiza development. In: Carroll G, Tudzynski P (eds) The Mycota V, part A. Springer, Berlin Heidelberg New York, (in press)

    Google Scholar 

  • Martin-Laurent F, Franken P, van Tuinen D, Dumas-Gaudot E, Gianinazzi-Pearson V, Gianinazzi S (1996) Differential display reverse transcriptase polymerase chain reaction: a new approach to detect symbiosis-related genes involved in arbuscular mycor-rhiza. In: Azcon-Aguilar C, Barea JM, Azcon R, Ocampo JA (eds) Mycorrhizas in integrated systems. From genes to plant development. Academic Publishers, Dordrecht, pp 195–198

    Google Scholar 

  • Murphy PJ, Karakousis A, Smith SE, Langridge P (1995) Cloning functional endomycorrhiza genes: potential for use in plant breeding. In: Stocchi V, Bonfante P, Nuti M (eds) Biotechnology of Ectomycorrhizae. Molecular approaches. Plenum Press, New York, pp 77–83

    Chapter  Google Scholar 

  • Mylona P, Moerman M, Yang W-C, Gloudemans T, Van De Kerckhove J, Kammen AV, Bisseling T, Franssen HJ (1994) The root epidermis-specific pea gene RH2 is homologous to a pathogenesis-related gene. Plant Mol Biol 26:39–50

    Article  PubMed  CAS  Google Scholar 

  • Norris JH, Macol LA, Hirsch AM (1988) Nodulin gene expression in effective alfalfa nodules and in nodules arrested at three different stages of development. Plant Physiol 88:321–328

    Article  PubMed  CAS  Google Scholar 

  • O’Farrell PH (1975) High resolution two dimensional electrophoresis of proteins. J Biol Chem 250:4007–4021

    PubMed  Google Scholar 

  • Ramagli LS, Rodriguez LW (1985) Quantification of microgram amounts of protein in two-dimensional Polyacrylamide gel electrophoresis sample buffer. Electrophoresis 6:559–563

    Article  CAS  Google Scholar 

  • Samra A, Dumas-Gaudot E, Gianinazzi-Pearson V, Gianinazzi S (1996) Changes in polypeptide profiles of two pea genotypes inoculated with the arbuscular mycorrhizal fungus Glomus mosseae. In: Azcon-Aguilar C, Barea JM, Azcon R, Ocampo JA (eds) Mycorrhizas in integrated systems. From genes to plant development. Academic Publishers, Dordrecht, pp 263–266

    Google Scholar 

  • Schellenbaum L, Gianinazzi S, Gianinazzi-Pearson V (1992) Comparison of acid soluble protein synthesis in roots of endomycorrhizal wild type Pisum sativum and corresponding isogenic mutants. J Plant Physiol 141:2–6

    Google Scholar 

  • Simoneau P, Louisy-Lois N, Plenchette C, Strullu DG (1994) Accumulation of new polypeptides in Ri-T-DNA-transformed roots of tomato (Lycopersicon esculentum) during the development of vesicular-arbuscular mycorrhizae. Appl Environ Microbiol 60:1810–1813

    PubMed  CAS  Google Scholar 

  • Tahiri-Alaoui A, Gianinazzi S, Gianinazzi-Pearson V, Dumas E (1991) Comparison of protein modifications in tobacco roots during interactions with pathogenic or symbiotic fungi. In: The International Society for Plant Molecular Biology. 3rd Int Congr. Tucson, Arizona 6–11 October 1991, 1373 pp

    Google Scholar 

  • Vigers AJ, Roberts WK, Selitrennikoff CP (1991) A new family of plant antifungal proteins. Mol Plant-Microbe Interact 4:315–323

    Article  PubMed  CAS  Google Scholar 

  • Wyss P, Mellor RB, Wiemken A (1990) Vesicular-arbuscular mycorrhizas of wild-type soybean and non-nodulating mutants with Glomus mosseae contain symbiosis-specific polypeptides (mycorrhizins), immunologically cross-reactive with nodulins. Planta 182:22–26

    Article  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 1998 Springer-Verlag Berlin Heidelberg

About this chapter

Cite this chapter

Dumas-Gaudot, E., Samra, A., Gianinazzi-Pearson, V., Gianinazzi, S. (1998). Untargeted Approaches to the Analysis of Gene Epression in Arbuscular Mycorrhiza: Analyses of Polypeptides (in Vivo and in Vitro) and of Translated mRNA Products. In: Varma, A. (eds) Mycorrhiza Manual. Springer Lab Manual. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-60268-9_20

Download citation

  • DOI: https://doi.org/10.1007/978-3-642-60268-9_20

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-540-62437-0

  • Online ISBN: 978-3-642-60268-9

  • eBook Packages: Springer Book Archive

Publish with us

Policies and ethics