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Plant Breeding: Genetic Mapping in Woody Crops

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Progress in Botany

Part of the book series: Progress in Botany ((BOTANY,volume 60))

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Abstract

The recent establishment of genetic maps in woody plants reviewed here will focus on the major fruit-producing horticultural perennials. These are citrus, apple, grape and others, whose products can be produced in high numbers, stored and shipped, and which have therefore acquired great economical importance in modern agriculture. In general, these species have been under traditional breeding for a long time. They have been chosen for genetic mapping in order to accelerate breeding progress.

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Reference

  • Allen FL (1994) Usefulness of plant genome mapping to plant breeding. In: Gresshoff PM (ed) Plant genome analysis. CRC Press, Boca Raton, pp 11–18

    Google Scholar 

  • Becker H (1993) Pflanzenziichtung. Verlag Eugen Ulmer, Stuttgart

    Google Scholar 

  • Binelli G, Bucci G (1994) A genetic linkage map for Picea abies Krst., based on RAPD markers as a tool in population genetics. Theor Appl Genet 88:283–288

    Article  CAS  Google Scholar 

  • Botstein D, White RL, Skolnick MH, Davis RW (1980) Construction of a linkage map in man using restriction fragment length polymorphisms. Am J Hum Genet 32:314–331

    PubMed  CAS  Google Scholar 

  • Bowers JE, Dangl GS, Vignani R, Meredith CP (1996) Isolation and characterization of new polymorphic simple sequence repeat loci in grape (Vitis vinifera L.). Genome 39:628–633

    Article  PubMed  CAS  Google Scholar 

  • Bradshaw HD, Villar M, Watson BD, Otto KG, Stewart S, Stettler RF (1994) Molecular genetics of growth and development in Populus. III.A genetic linkage map of a hybrid poplar composed of RFLP, STS and RAPD markers. Theor Appl Genet 89:167–178

    CAS  Google Scholar 

  • Büscher N, Zyprian E, Blaich R (1993) Identification of grapevine cultivars by DNA analyses: pitfalls of random amplified polymorphic DNA techniques using l0mer primers. Vitis 32:187–188

    Google Scholar 

  • Byrne M, Murrell JC, Allen B, Moran GF (1995) An integrated genetic linkage map for eucalypts using RFLP, RAPD and isozyme markers. Theor Appl Genet 91:869–875

    Article  CAS  Google Scholar 

  • Byrne M, Murrel JC, Owen JV, Kriedemann P, Williams ER, Moran GF (1997) Identification and mode of action of quantitative trait loci affecting seedling height and leaf area in Eucalyptus nitens. Theor Appl Genet 94:674–681

    Article  Google Scholar 

  • Cai Q, Guy CL, Moore GA (1994) Extension of the linkage map in Citrus using random amplified polymorphic DNA (RAPD) markers and RFLP mapping of cold-acclimation- responsive loci. Theor Appl Genet 89:606–614

    Article  CAS  Google Scholar 

  • Chakravarti A, Lasher LK, Reefer JE (1991) A maximum likelihood method for estimating genome length using genetic linkage data. Genetics 128:175–182

    PubMed  CAS  Google Scholar 

  • Chaparro JX, Wener DJ, O’Malley D, Sederoff RR (1994) Targeted mapping and linkage analysis of morphological, isozyme, and RAPD markers in peach. Theor App Genet 87:805–815

    Article  CAS  Google Scholar 

  • Churchill GA, Doerge RW (1994) Empirical threshold values for quantitative trait mapping. Genetics 139:963–971

    Google Scholar 

  • Cregan PB, Akkaya MS, Bhagwat AA, Lavi U, Rongwen J (1994) Length polymorphisms of simple sequence repeat (SSR) DNA as molecular markers in plants. In: Gresshoff PM (ed) Plant genome analysis. CRC Press, Boca Raton, pp 47–56

    Google Scholar 

  • Deng Z, Huang S, Xiao S, Gmitter G Jr (1997) Development and characterization of SCAR markers linked to the citrus tristeza virus resistance gene from Poncirus trifoliata. Genome 40:697–704

    Article  PubMed  CAS  Google Scholar 

  • Devey ME, Delfino-Mix A, Kinloch B Jr, Neale DB (1995) Random amplified polymorphic DNA markers tightly linked to a gene for resistance to white pine blister rust in sugar pine. Proc Natl Acad Sci USA 92:2066–2070

    Article  PubMed  CAS  Google Scholar 

  • Durham RE, Liou PC, Gmitter FG Jr, Moore GA (1992) Linkage of restriction fragment length polymorphisms and isozymes in Citrus. Theor Appl Genet 84:39–48

    Article  CAS  Google Scholar 

  • Echt CS, May-Marquardt P (1997) Survey of microsatellites in pine. Genome 40:9–17

    Article  PubMed  CAS  Google Scholar 

  • Franke W (1997) Nutzpflanzenkunde, 6th ed. Georg Thieme Verlag, Stuttgart

    Google Scholar 

  • Gmitter FG Jr, Xiao SY, Huang S, Hu XH, Garnsey SM, Deng Z (1996) A localized linkage map of the citrus tristeza virus resistance region. Theor Appl Genet 92:688–695

    Article  CAS  Google Scholar 

  • Graner A, Wenzel G (1992) Towards an understanding of the genome - new molecular markers increase the efficiency of plant breeding. Agro-Food-Industry Hi-Tech 3:18–23

    Google Scholar 

  • Grattapaglia D, Bertolucci FK, Sederoff RR (1995) Genetic mapping of QTLs controlling vegetative propagation in Eucalyptus grandis and E. urophylla using a pseudotest cross strategy and RAPD markers. Theor Appl Genet 90:933–947

    Article  CAS  Google Scholar 

  • Grattapaglia D, Bertolucci FLG, Penchel R, Sederoff RR (1996) Genetic mapping of quantitative trait loci controlling growth and wood quality traits in Eucalyptus grandis using a maternal half sib family and RAPD markers. Genetics 144:1205–1214

    PubMed  CAS  Google Scholar 

  • Guilford P, Prakash S, Zhu JM, Rikkerink E, Gardiner S, Bassett H, Forster R (1997) Microsatellites in Malus x domestica (apple): abundance, polymorphism and cultivar identification. Theor Appl Genet 94:249–254

    Article  CAS  Google Scholar 

  • Guitérrez MA, Luth ED, Moore GA (1997) Factors affecting Agrobacteriurn-mediated transformation in Citrus and producing sour orange (Citrus aurantium L.) plants expressing the coat protein gene of the citrus tristeza virus. Plant Cell Rep 16:745–753

    Article  Google Scholar 

  • Hemmat M, Weeden NF, Manganaris AG, Lawson DN (1994) Molecular marker linkage map for apple. J Hered 85:4–11

    PubMed  CAS  Google Scholar 

  • Jansen RC, Stam P (1994) High resolution of quantitative traits into multiple loci via interval mapping. Genetics 136:1447–1455

    PubMed  CAS  Google Scholar 

  • Jarrell DC, Roose ML, Traugh SN, Kupper RS (1992) A genetic map of citrus based on the segregation of isozymes and RFLPs in an intergeneric cross. Theor Appl Genet 84:49–56

    Article  CAS  Google Scholar 

  • Jones N, Ougham H, Thomas H (1997) Markers and mapping: we are all geneticists now. New Phytol 137:165–177

    Article  Google Scholar 

  • Kamm A, Doudrick RL, Heslop-Harrison JS, Schnidt T (1996) The genomic and physical organization of Tyl-copia-like sequences as a component of large genomes in Pinus elliottii var. elliottii and other gymnosperms. Proc Natl Acad Sci USA 93:2708–2713

    Article  PubMed  CAS  Google Scholar 

  • Kaudewitz F (1992) Genetik. Verlag Eugen Ulmer, Stuttgart

    Google Scholar 

  • Kijas JMH, Thomas MR, Fowler JCS, Roose ML (1997) Integration of trinucleotide microsatellites into a linkage map of Citrus. Theor Appl Genet 94:701–706

    Article  CAS  Google Scholar 

  • Knapp SJ, Bridges WC Jr, Birkes D (1990) Mapping quantitative trait loci using molecular linkage maps. Theor Appl Genet 79:583–592

    Article  Google Scholar 

  • Kosambi DD (1944) The estimation of map distances from recombination values. Ann Eugenet 12:172–175

    Article  Google Scholar 

  • Kubisiak TL, Nelson CD, Nance WL, Stine M (1995) RAPD linkage mapping in a longleaf pine x slash pine F1 family. Theor Appl Genet 90:1119–1127

    Article  CAS  Google Scholar 

  • Lander ES, Botstein D (1989) Mapping Mendelian factors underlying quantitative traits using RFLP linkage maps. Genetics 121:185–199

    PubMed  CAS  Google Scholar 

  • Lander E, Green P, Abrahamson J, Barlow A, Daley M, Lincoln S, Newburg L (1987) MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics 1:174–181

    Article  PubMed  CAS  Google Scholar 

  • Levi A, Rowland L, Hartung JS (1993) Production of reliable randomly amplified polymorphic DNA (RAPD) markers from DNA of woody plants. HortScience 28:1188–1190

    CAS  Google Scholar 

  • Lodhi MA, Daly MJ, Ye G-N, Weeden NF, Reisch BI (1995) A molecular marker based linkage map of Vitis. Genome 38:786–794

    Article  PubMed  CAS  Google Scholar 

  • Lodhi MA, Weeden NF, Reisch BI (1997) Characterization of RAPD markers in Vitis. Vitis 36:133–140

    Google Scholar 

  • Michelmore RW, Paran I, Kesseli RV (1991) Identification of markers linked to diseaseresistance genes by bulked segregant analysis: a rapid method to detect markers in specific genomic regions by using segregating populations. Proc Natl Acad Sci USA 88:9828–9832

    Article  PubMed  CAS  Google Scholar 

  • Mullins MG, Bouquet A, Williams LE (1992) Biology of the grapevine. Cambridge University Press, Cambridge

    Google Scholar 

  • Nelson CD, Nance WL, Doudrick RL (1993) A partial genetic linkage map of slash pine (Pinus elliottiii Engelm. var. eliottii) based on random amplified polymorphic DNA. Theor Appl Genet 87:145–151

    Article  CAS  Google Scholar 

  • Oliviera MM, Miguel CM, Raquel MH (1996) Transformation studies in woody fruit species. Plant Tissue Cult Biotechnol 2(2)76–93

    Google Scholar 

  • Paran I, Michelmore RW (1993) Development of reliable PCR-based markers linked to downy mildew resistance genes in lettuce. Theor Appl Genet 85:985–993

    Article  CAS  Google Scholar 

  • Paterson A, Lander E, Lincoln S, Hewitt J, Peterson S, Taksley S (1988) Resolution of quantitative traits into Mendelian factors using a complete RFLP linkage map. Nature 335:721–726

    Article  PubMed  CAS  Google Scholar 

  • Pena L, Cervera M, Juárez J, Navarro A, Pina JA, Navarro L (1997) Genetic transformation of lime (Citrus aurantifolia Swing.): factors affecting transformation and regeneration. Plant Cell Rep 16:731–737

    Article  CAS  Google Scholar 

  • Plomion C, Bahrmann N, Durel C-E, O’Malley DM (1995) Genomic mapping in Pinus pinaster (maritime pine) using RAPD and protein markers. Heredity 74:661–668

    Article  CAS  Google Scholar 

  • Risch N (1992) Genetic linkage: interpreting Lod scores. Science 255:803–804

    Article  PubMed  CAS  Google Scholar 

  • Rowland LJ, Lewi A (1994) RAPD-based genetic linkage map of blueberry derived from a cross between diploid species (Vaccinium darrowi and V. elliottii). Theor Appl Genet 87:863–868

    Article  CAS  Google Scholar 

  • Roy A, Fracaria N, MacKay J, Bousquet J (1992) Segregating random amplified polymorphic DNAs (RAPDs) in Betula alleghamiensis. Theor Appl Genet 85:173–180

    Article  CAS  Google Scholar 

  • Saiki RK, Gelfand DH, Stoffel S, Scharf SJ, Higuchi R, Horn GT, Mullis KB, Erlich HA (1988) Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase. Science 239:487–491

    Article  PubMed  CAS  Google Scholar 

  • Shoemaker RC, Lorenzen LL, Diers BW, Olson TC (1994) Genome mapping and agriculture. In: Gresshoff PM (ed) Plant genome analysis. CRC Press, Boca Raton, pp 1–10

    Google Scholar 

  • Southern EM (1975) Detection of specific sequences among DNA fragments separated by gel electrophoresis. J Mol Biol 98:503–517

    Article  PubMed  CAS  Google Scholar 

  • Stam P (1993) Construction of integrated generic linkage maps by means of a new computer package: JoinMap. Plant J 3:739–744

    Article  CAS  Google Scholar 

  • Staub JE, Serquen F, Gupta M (1996) Genetic markers, map construction, and their application in plant breeding. HortScience 31:729–740

    CAS  Google Scholar 

  • Steinkellner H, Fluch S, Turetschek E, Lexer C, Streiff R, Kremer A, Burg K, Gloessl J (1997) Identification and characterization of (GA-CT)n-microsatellite loci from Quercuspetraea. Plant Mol Biol 33:1093–1096

    Article  PubMed  CAS  Google Scholar 

  • Suiter KA, Wendel JF, Case JS (1983) LINKAGE-1: a PASCAL computer program for the detection and analysis of genetic linkage. J Hered 74:203–204

    PubMed  CAS  Google Scholar 

  • Thomas MR, Cain P, Matsumoto S, Scott NS (1993a) Microsatellite sequences in grapevine for mapping and fingerprinting. In: Hayashi T et al. (eds) Techniques on gene diagnosis and breeding in fruit trees. Fruit Tree Research station, Ministry of Agriculture, Forestry and Fisheries, Fujimoto, Tsukuba, Ibaraki, 305, Japan

    Google Scholar 

  • Thomas MR, Matsumoto S, Cain P, Scott NS (1993b) Repetitive DNA of grapevine: classes present and sequences suitable for cultivar identification. Theor Appl Genet 86:173–180

    CAS  Google Scholar 

  • Thomas MR, Cain P, Scott NS (1994) DNA typring of grapevines: A universal methodology and database for describing cultivars and evaluating genetic relatedness. Plant Mol Biol 25:939–949

    Article  PubMed  CAS  Google Scholar 

  • Tingey SV, delTufo JP (1993) Genetic analysis with random amplified polymorphic DNA markers. Plant Physiol 101:349–352

    Article  PubMed  CAS  Google Scholar 

  • Verhaegen D, Plomion C (1996) Genetic mapping in Eucalyptus urophylla and Eucalyptus grandis using RAPD markers. Genome 39:1051–1061

    Article  PubMed  CAS  Google Scholar 

  • Villar M, Lefèvre F, Bradshaw HD Jr, Teissier du Cros E (1996) Molecular genetics of rust resistance in poplars (Melampsora larici-populina Kleb/Populus sp.) by bulked segregant analysis in a 2 x 2 factoral mating design. Genetics 143:531–536

    PubMed  CAS  Google Scholar 

  • Weeden NF (1994) Approaches to mapping in horticultural crops. In: Gresshoff PM (ed) Plant genome analysis. CRC Press, Boca Raton, pp 57–68

    Google Scholar 

  • Welsh J, McClelland M (1990) Fingerprinting genomes using PCR with arbitrary primers. Nucleic Acids Res 18:7213–7218

    Article  PubMed  CAS  Google Scholar 

  • Wilcox PL, Amerson HV, Kuhlman EG, Liu BH, O’Malley DM, Sederoff RR (1996) Detection of a major gene for resistance to fusiform rust disease in loblolly pine by genomic mapping. Proc Natl Acad Sci USA 93:3859–3864

    Article  PubMed  CAS  Google Scholar 

  • Williams JGK, Kubelik AR, Livak KJ, Rafalski JAS, Tingey SV (1990) DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Res 18:6531–6535

    Article  PubMed  CAS  Google Scholar 

  • Williams JGK, Hanafey MK, Rafalski JA, Tingey SV (1993) Genetic analysis using random amplified polymorphic DNA markers. Meth Enzymol 218:704–740

    Article  PubMed  CAS  Google Scholar 

  • Yao JL, Wu JH, Gleave AP, Morris BAm (1996) Transformation of citrus embryogenic cells using particle bombardment and production of transgenic embryos. Plant Sci 113:175–183

    Article  CAS  Google Scholar 

  • Ye GN, Hemmat M, Lohdi MA, Weeden NF, Reisch BI (1996) Long primers for RAPDmapping and fingerprinting of grape and pear. BioTechniques 20:368–371

    PubMed  CAS  Google Scholar 

  • Zabeau M, Vos P (1992) Selective restriction fragment amplification: a general method for DNA fingerpringing. European patent application 92402629.7, No 0 534 858 Al

    Google Scholar 

  • Zeng Z-B (1993) Theoretical basis for separation of multiple linked gene effects in mapping quantitative trait loci. Proc Natl Acad Sci USA 90:10972–10976

    Article  PubMed  CAS  Google Scholar 

  • Zeng Z-B (1994) Precision mapping of quantiative trait loci. Genetics 136:1457–1468

    PubMed  CAS  Google Scholar 

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© 1999 Springer-Verlag Berlin Heidelberg

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Zyprian, E. (1999). Plant Breeding: Genetic Mapping in Woody Crops. In: Esser, K., Kadereit, J.W., Lüttge, U., Runge, M. (eds) Progress in Botany. Progress in Botany, vol 60. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-59940-8_7

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  • DOI: https://doi.org/10.1007/978-3-642-59940-8_7

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