Skip to main content

Structure and Phylogenetic Information of Large Subunit Ribosomal RNA

  • Conference paper
Book cover Analyzing and Modeling Data and Knowledge
  • 207 Accesses

Abstract

During the last decade comparative sequence analysis of homologous conserved molecules or genes allowed a comprehensive inside in the evolution of organisms. The primary structure of phylogenetic marker molecules consists of an alternating sequence of highly conserved to highly variable regions reflecting the various stages of evolutionary history. As an attempt to determine the phylogenetic information of individual sequence positions an alignment of 70 large subunit ribosomal RNA sequences was analyzed for conservation, covariations, structure, and functional elements. Examples of typical structure elements are discussed with respect to the reconstruction of phylogenetic trees.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 84.99
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 109.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  • BROSIUS, J., DULL, T.J., and NOLLER, H.F. (1980), Complete Nucleotide Sequence of a 23S Ribosomal RNA Gene from Escherichia coli, Proceedings National Academy Sciences U.S.A., 77, 201–204.

    Article  Google Scholar 

  • DRYDEN, S.C., and KAPLAN, S. (1990), Localization and Structural Analysis of the Ribosomal RNA Operons of Rhodobacter sphaeroides, Nucleic Acids Resarch, 18, 7267–7277.

    Article  Google Scholar 

  • FARRIS, J.S. (1969), A Successive Approximation Approach to Character Weighting, Systematic Zoology, 18, 374–385.

    Article  Google Scholar 

  • FELSENSTEIN, J. (1981), A Likelihood Approach to Character Weighting and what it Tells Us About Parsimony and Compatibility, Biological Journal Linnean Society, 16, 183–196.

    Article  Google Scholar 

  • FELSENSTEIN, J., (1988), Phylogenies from Molecular Sequences: Inference and Reliability, Annual Reviews Genetics, 22, 521–565.

    Article  Google Scholar 

  • GREEN, C.J., STEWART, G.C., VOLD, B.S., and BOTT, K.E. (1985) Nucleotide sequence of the Bacillus subtilis Ribosomal RNA Operon, rrn B, Gene, 37, 261–266.

    Article  Google Scholar 

  • HöPFL, P., LUDWIG, W., and SCHLEIFER, K.H. (1988), Complete Nucleotide Sequence of a 23S Ribosomal RNA Gene from Rhodobacter capsulatus, Nucleic Acids Research, 16, 2343.

    Article  Google Scholar 

  • HöPFL, P., LUDWIG, W., SCHLEIFER, K.H., and LARSEN, N. (1989), The 23S Ribosomal RNA Higher Order Structure of Pseudomonas cepacia and Other Prokaryotes, European Journal Biochemistry, 185, 355–364.

    Article  Google Scholar 

  • KOP, J., WHEATON,V., GUPTA, R., WOESE, C.R., and NOLLER, H.F. (1984), Complete Nucleotide Sequence of a 23S Ribosomal RNA Gene from Bacillus stearothermophilus, DNA, 3, 347–357.

    Article  Google Scholar 

  • LUDWIG, W., and SCHLEIFER, K.H. (1989), Nucleotide Sequence Analysis of Conserved Genes from Bacteria, in: Conceptual and Numerical Analysis of Data, ed. O. OPITZ, Springer, Berlin, 489–504.

    Google Scholar 

  • PERNODET, J.-L., BOCCARD, F., ALEGRE, M.-T., GAGNAT, J., and GU’ERINEAU, M. (1989), Organization and Nucleotide Sequence Analysis of a Ribosomal RNA Gene Cluster from Streptomyces ambofaciens, Gene, 79, 33–46.

    Article  Google Scholar 

  • SPIEGL, H., LUDWIG, W., SCHLEIFER, K.H., and STACKEBRANDT, E. (1988), Complete Nucleotide Sequence of a 23S Ribosomal RNA Gene from Ruminobacter amylophilus, Nucleic Acids Research, 16, 2345.

    Article  Google Scholar 

  • SWOFFORD, D.L., and OLSEN, G.J. (1990), Phylogeny Reconstruction, in: Molecular Systematics, eds. D.M. HILLIS and C. Moritz, Sinauer, Sunderland, 411–501.

    Google Scholar 

  • TOSCHKA, H.Y., HOPFL, P., LUDWIG, W., SCHLEIFER, K.H., ULBRICH, N., and ERDMANN, V.A. (1987), Complete Nucleotide Sequence of a 23S Ribosomal RNA Gene from Pseudomonas aeruginosa, Nucleic Acids Research, 15, 1782.

    Google Scholar 

  • WOESE, C.R. (1987), Bacterial Evolution, Microbiological Reviews, 51, 221–271.

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 1992 Springer-Verlag Berlin · Heidelberg

About this paper

Cite this paper

Ludwig, W. (1992). Structure and Phylogenetic Information of Large Subunit Ribosomal RNA. In: Schader, M. (eds) Analyzing and Modeling Data and Knowledge. Studies in Classification, Data Analysis, and Knowledge Organization. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-46757-8_30

Download citation

  • DOI: https://doi.org/10.1007/978-3-642-46757-8_30

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-540-54708-2

  • Online ISBN: 978-3-642-46757-8

  • eBook Packages: Springer Book Archive

Publish with us

Policies and ethics