Abstract
During the last decade comparative sequence analysis of homologous conserved molecules or genes allowed a comprehensive inside in the evolution of organisms. The primary structure of phylogenetic marker molecules consists of an alternating sequence of highly conserved to highly variable regions reflecting the various stages of evolutionary history. As an attempt to determine the phylogenetic information of individual sequence positions an alignment of 70 large subunit ribosomal RNA sequences was analyzed for conservation, covariations, structure, and functional elements. Examples of typical structure elements are discussed with respect to the reconstruction of phylogenetic trees.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
Preview
Unable to display preview. Download preview PDF.
References
BROSIUS, J., DULL, T.J., and NOLLER, H.F. (1980), Complete Nucleotide Sequence of a 23S Ribosomal RNA Gene from Escherichia coli, Proceedings National Academy Sciences U.S.A., 77, 201–204.
DRYDEN, S.C., and KAPLAN, S. (1990), Localization and Structural Analysis of the Ribosomal RNA Operons of Rhodobacter sphaeroides, Nucleic Acids Resarch, 18, 7267–7277.
FARRIS, J.S. (1969), A Successive Approximation Approach to Character Weighting, Systematic Zoology, 18, 374–385.
FELSENSTEIN, J. (1981), A Likelihood Approach to Character Weighting and what it Tells Us About Parsimony and Compatibility, Biological Journal Linnean Society, 16, 183–196.
FELSENSTEIN, J., (1988), Phylogenies from Molecular Sequences: Inference and Reliability, Annual Reviews Genetics, 22, 521–565.
GREEN, C.J., STEWART, G.C., VOLD, B.S., and BOTT, K.E. (1985) Nucleotide sequence of the Bacillus subtilis Ribosomal RNA Operon, rrn B, Gene, 37, 261–266.
HöPFL, P., LUDWIG, W., and SCHLEIFER, K.H. (1988), Complete Nucleotide Sequence of a 23S Ribosomal RNA Gene from Rhodobacter capsulatus, Nucleic Acids Research, 16, 2343.
HöPFL, P., LUDWIG, W., SCHLEIFER, K.H., and LARSEN, N. (1989), The 23S Ribosomal RNA Higher Order Structure of Pseudomonas cepacia and Other Prokaryotes, European Journal Biochemistry, 185, 355–364.
KOP, J., WHEATON,V., GUPTA, R., WOESE, C.R., and NOLLER, H.F. (1984), Complete Nucleotide Sequence of a 23S Ribosomal RNA Gene from Bacillus stearothermophilus, DNA, 3, 347–357.
LUDWIG, W., and SCHLEIFER, K.H. (1989), Nucleotide Sequence Analysis of Conserved Genes from Bacteria, in: Conceptual and Numerical Analysis of Data, ed. O. OPITZ, Springer, Berlin, 489–504.
PERNODET, J.-L., BOCCARD, F., ALEGRE, M.-T., GAGNAT, J., and GU’ERINEAU, M. (1989), Organization and Nucleotide Sequence Analysis of a Ribosomal RNA Gene Cluster from Streptomyces ambofaciens, Gene, 79, 33–46.
SPIEGL, H., LUDWIG, W., SCHLEIFER, K.H., and STACKEBRANDT, E. (1988), Complete Nucleotide Sequence of a 23S Ribosomal RNA Gene from Ruminobacter amylophilus, Nucleic Acids Research, 16, 2345.
SWOFFORD, D.L., and OLSEN, G.J. (1990), Phylogeny Reconstruction, in: Molecular Systematics, eds. D.M. HILLIS and C. Moritz, Sinauer, Sunderland, 411–501.
TOSCHKA, H.Y., HOPFL, P., LUDWIG, W., SCHLEIFER, K.H., ULBRICH, N., and ERDMANN, V.A. (1987), Complete Nucleotide Sequence of a 23S Ribosomal RNA Gene from Pseudomonas aeruginosa, Nucleic Acids Research, 15, 1782.
WOESE, C.R. (1987), Bacterial Evolution, Microbiological Reviews, 51, 221–271.
Author information
Authors and Affiliations
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 1992 Springer-Verlag Berlin · Heidelberg
About this paper
Cite this paper
Ludwig, W. (1992). Structure and Phylogenetic Information of Large Subunit Ribosomal RNA. In: Schader, M. (eds) Analyzing and Modeling Data and Knowledge. Studies in Classification, Data Analysis, and Knowledge Organization. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-46757-8_30
Download citation
DOI: https://doi.org/10.1007/978-3-642-46757-8_30
Publisher Name: Springer, Berlin, Heidelberg
Print ISBN: 978-3-540-54708-2
Online ISBN: 978-3-642-46757-8
eBook Packages: Springer Book Archive