Abstract
Growing technologies and in turn the industrialization have led to tremendous increase in use of chemicals and their release into the environment which poses threat to human and other biota. In the recent past, biological treatment processes such as bioremediation have gained popularity in removing these chemicals from the environment, since they offer a cost-effective and eco-friendly alternative to conventional chemical techniques. In spite of all fascinating properties associated with the traditional bioremediation processes, intricacies associated with the treatment of complex compounds still is a big question. Some of the recent advances in biotechnologies helped researchers to solve this question, but most of these technologies are still applicable at lab scale. There is a great need to bring these technologies to field applications. Some of these biotechnologies if hybridized with one another or with traditional methods may give a promising platform to enhance bioremediation processes. This chapter emphasizes on recent trends in bioremediation processes and their application in solving removal of complex compounds from environment.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
Similar content being viewed by others
References
Abid N, Chamkha M, Godon JJ, Sayadi S (2007) Involvement of microbial populations during the composting of olive mill wastewater sludge. Environ Technol 28:751–760
Agarry SE, Owabor CN, Yusuf RO (2012) Enhanced bioremediation of soil artificially contaminated with kerosene: optimization of biostimulation agents through statistical experimental design. J Pet Environ Biotechnol 3:3, http://dx.doi.org/10.4172/2157-7463.1000120
Asçi Y, Nurbas M, Açikel YS (2010) Investigation of sorption/desorption equilibria of heavy metal ions on/from quartz using rhamnolipid biosurfactant. J Environ Manage 91:724–731
Atagana H (2006) Biodegradation of polyacyclic aromatic hydrocarbons in contaminated soil by biostimulation and bioaugmentation in the presence of copper(II) ions. World J Microbiol Biotechnol 22:1145–1153
Atagana HI (2008) Compost bioremediation of hydrocarbon contaminated soil inoculated with organic manure. Afr J Biotechnol 7:1516–1525
Azadi H, Ho P (2010) Genetically modified and organic crops in developing countries: a review of options for food security. Biotechnol Adv 28:160–168
Banat IM, Makkar RS, Cameotra SS (2000) Potential commercial applications of microbial surfactants. Appl Microbiol Biotechnol 53:495–508
Bedard DL, May RJ (1996) Characterization of the polychlorinated biphenyls in sediments of woods pond: evidence for microbial declorination of aroclors 1260 in-situ. Environ Sci Technol 30:237–245
Bell TH, Yergeau E, Martineau C, Juck D, Whyte LG, Greer CW (2011) Identification of nitrogen-incorporating bacteria in petroleum contaminated arctic soils by using [15N] DNA-based stable isotope probing and pyrosequencing. Appl Environ Microbiol 77:4163–4171
Bodour AA, Guerrero-Barajas C, Jiorle BV, Malcomson ME, Paull AK, Somogyi A, Trinh LN, Bates RB, Maier RM (2004) Structure and characterization of flavolipids, a novel group of biosurfactants produced by Flavobacterium sp. MTN11. Appl Environ Microbiol 70:114–120
Boparai HK, Shea PJ, Comfort SD, Machacek TA (2008) Sequencing zerovalent iron treatment with carbon amendments to remediate agrichemical-contaminated soil. Water Air Soil Pollut 193:189–196
Cameotra SS, Makkar RS (2010) Biosurfactant-enhanced bioremediation of hydrophobic pollutants. Pure Appl Chem 82:97–116
Chen Y, Wang Y, Wu W, Lin Q, Xue S (2006) Impacts of chelate-assisted phytoremediation on microbial community composition in the rhizosphere of a copper accumulator and non-accumulator. Sci Total Environ 356:247–255
Christensen ER, Bzdusek PA (2005) PAHs in sediments of the Black River and the Ashtabula River, Ohio: source apportionment by factor analysis. Water Res 39:511–524
Dafale N, Nageswara Rao N, Meshram SU, Wate SR (2008) Decolorization of azo dyes and simulated dye bath wastewater using acclimatized microbial consortium Biostimulation and halo tolerance. Bioresour Technol 99:2552–2558
Delgado Moreno L, Pena A (2009) Compost and vermicompost of olive cake to bioremediate triazines-contaminated soil. Sci Total Environ 407:1489–1495
Dipu S, Kumar AA, Thanga SG (2012) Effect of chelating agents in phytoremediation of heavy metals. Remed J 22:133–146
Duran N (2008) Use of nanoparticles in soil-water bioremediation processes. J Soil Sci Plant Nutr 8:33–38
Duran N, Marcato PD, Alves OL, Da Silva JPS, De Souza GIH, Rodrigues FA, Esposito E (2010) Ecosystem protection by effluent bioremediation: silver nanoparticles impregnation in a textile fabrics process. J Nanopart Res 12:285–292
Eapen S, Singh S, D’Souza SF (2007) Advances in development of transgenic plants for remediation of xenobiotic pollutants. Biotechnol Adv 25:442–451
Ebbs S, Hatfield S, Nagarajan V, Blaylock M (2010) A comparison of the dietary arsenic exposures from ingestion of contaminated soil and hyperaccumulating pteris ferns used in a residential phytoremediation project. Int J Phytoremediation 11:121–132
Eddouaouda K, Mnif S, Badis A, Younes SB, Cherif S, Samira Ferhat S, Mhiri N, Chamkha M, Sayadi S (2011) Characterization of a novel biosurfactant produced by Staphylococcus sp. strain 1E with potential application on hydrocarbon bioremediation. J Basic Microbiol 52:408–418
Franzetti A, Gandolfi I, Smyth TJP, Banat IM (2010) Production and applications of trehalose lipid biosurfactants. Eur J Lipid Sci Technol 112:617–627, Special Issue: Microbial biosurfactants
Fulekar MH, Sharma J (2008) Bioinformatics applied in bioremediation. Innov Rom Food Biotechnol 2:28–36
Gallego JL, Loredo J, Llamas JF, Vazquez F, Sanchez J (2001) Bioremediation of diesel-contaminated soils: evaluation of potential in situ techniques by study of bacterial degradation. Biodegradation 12:325–335
Gao S, Meegoda JN, Liming H (2012) A dynamic two-phase flow model for air sparging. Int J Numer Anal Meth Geomech. doi:10.1002/nag.2109
Garcia-Blanco S, Venosa AD, Suidan MT, Lee K, Cobanli S, Haines JR (2007) Biostimulation for the treatment of an oil-contaminated coastal salt marsh. Biodegradation 18:1–15
Gavrilescu M, Chisti Y (2005) Biotechnology – a sustainable alternative for chemical industry. Biotechnol Adv 23:471–499
Gelman F, Binstock R (2008) Natural attenuation of MTBE and BTEX compounds in a petroleum contaminated shallow coastal aquifer. Environ Chem Lett 6:259–262
Ghaly A, Zhang B, Dave D (2011) Biodegradation of phenolic compounds in creosote treated wood waste by a composting microbial culture augmented with the fungus Thermoascus aurantiacus. Am J Biochem Biotechnol 7:90–103
Gidarakos EL, Aivalioti MV (2008) In-well air sparging efficiency in remediating the aquifer of a petroleum refinery site. J Environ Eng Sci 7:71–82
Glick BR (2010) Using soil bacteria to facilitate phytoremediation. Biotechnol Adv 28:367–374
Harmsen J, Rulkens WH, Sims RC, Rijtema PE, Zweers AJ (2007) Theory and application of landfarming to remediate polycyclic aromatic hydrocarbons and mineral oil contaminated sediments; beneficial reuse. J Environ Qual 36:1112–1122
Hatti-Kaul R, Tornvall U, Gustafsson L, Borjesson P (2007) Industrial biotechnology for the production of bio-based chemicals – a cradle-to-grave perspective. Trends Biotechnol 25:119–124
Hazen T, Chakraborty R, Fleming J, Gregory I, Bowman J, Jimenez L, Zhang D, Pfiffner S, Brockman F, Sayler G (2009) Use of gene probes to assess the impact and effectiveness of aerobic in situ bioremediation of TCE. Arch Microbiol 191:221–232
Hemme CL, Deng Y, Gentry TJ, Fields MW, Wu L, Barua S, Barry K, Tringe SG, Watson DB, He Z (2010) Metagenomic insights into evolution of a heavy metal-contaminated groundwater microbial community. ISME J 4:660–672
Heron G, Gierke JS, Faulkner B, Mravik S, Wood L, Enfield CG (2002) Pulsed air sparging in aquifers contaminated with dense nonaqueous phase liquids. Ground Water Monit Remediat 22:73–82
Hirschorn SK, Grostern A, Lacrampe-Couloume G, Edwards EA, MacKinnon L, Repta C, Major DW, Sherwood Lollar B (2007) Quantification of biotransformation of chlorinated hydrocarbons in a biostimulation study: added value via stable carbon isotope analysis. J Contam Hydrol 94:249–260
Ideker T, Thorsson V, Ranish JA, Christmas R, Buhler J, Eng JK, Bumgarner R, Goodlett DR, Aebersold R, Hood L (2001) Integrated genomic and proteomic analyses of a systematically perturbedmetabolic network. Science 292:929–934
Jaimini D, Shabnam AA, Sarkar C (2012) In-silico feasibility of novel biodegradation pathways for 1-naphthyl methylcarbamate. Am-Euras J Toxicol Sci 4:89–93
Juwarkar AA, Singh SK (2010) Microbe-assisted phytoremediation approach for ecological restoration of zinc mine spoil dump. Int J Environ Poll 43:236–250
Juwarkar AA, Dubey KV, Nair A, Singh SK (2008) Bioremediation of multi-metal contaminated soil using biosurfactant – a novel approach. Indian J Microbiol 48:142–146
Kabelitz N, Machackova J, Imfeld G, Brennerova M, Pieper DH, Heipieper HJ, Junca H (2009) Enhancement of the microbial community biomass and diversity during air sparging bioremediation of a soil highly contaminated with kerosene and BTEX. Appl Microbiol Biotechnol 82:565–577
Kang SW, Kim YB, Shin JD, Kim EK (2010) Enhanced biodegradation of hydrocarbons in soil by microbial biosurfactant, sophorolipid. Appl Biochem Biotechnol 160:780–790
Khan FI, Husain T, Hejazi R (2004) An overview and analysis of site remediation technologies. J Environ Manag 71:95–122
Kim HM, Hyun Y, Lee KK (2007) Remediation of TCE contaminated groundwater in a sandy aquifer using pulsed air sparging: laboratory and numerical studies. J Environ Eng 133:380–388
Komancova M, Jurcova I, Kochankova L, Burkhard J (2003) Metabolic pathways of polychlorinated biphenyls degradation by Pseudomonas sp. Chemosphere 50:537–543
Kos B, Grčman H, Leštan D (2003) Phytoextraction of lead, zinc and cadmium from soil by selected plants. Plant Soil Environ 49(12):548–553
Krishnani KK, Shekhar MS, Gopikrishna G, Gupta BP (2009) Molecular biological characterization and biostimulation of ammonia—oxidizing bacteria in brackishwater aquaculture. J Environ Sci Health A 44:1598–1608
Kubátová A, Erbanová P, Eichlerová I, Homolka L, Nerud F, Aek V (2001) PCB congener selective biodegradation by the white rot fungus Pleurotus ostreatusin contaminated soil. Chemosphere 43:207–215
Kulshreshtha S (2012) Current trends in bioremediation and biodegradation. J Bioremed Biodeg 3:e114, org/10.4172/2155-6199.1000e114
Kumar V, Dhall P, Kumar R, Singh YP, Kumar A (2012) Bioremediation of agro-based pulp mill effluent by microbial consortium comprising autochthonous bacteria. ScientificWorldJournal 2012:127014
Kuyukina MS, Ivshina IB, Ritchkova MI, Philp JC (2003) Bioremediation of crude oil-contaminated soil using slurry-phase biological treatment and land farming techniques. Soil Sediment Contam 12:85–99
Lovely D (2003) Cleaning up with genomics – applying molecular biology to bioremediation. Nature 1:35–43
Luciana PP, Sage RH, Elizabeth MP, Kenneth FR, Amy P (2012) Effect of bioaugmentation and biostimulation on sulfate-reducing column startup captured by functional gene profiling. FEMS Microbiol Ecol 82(1):135–47
Maciel BM, Santos ACF, Dias JCT, Vidal RO, Dias RJC, Gross E, Cascardo JCM, Rezende RP (2009) Simple DNA extraction protocol for a 16S rDNA study of bacterial diversity in tropical landfarm soil used for bioremediation of oil waste. Genet Mol Res 8:375–388
Malvankar NS, Lovley DR (2012) Microbial nanowires: a new paradigm for biological electron transfer and bioelectronics. ChemSusChem 5:1039–1046
Mao X, Wang J, Ciblak A, Cox EE, Riis C, Terkelsen M, Gent DB, Alshawabkeh AN (2012) Electrokinetic-enhanced bioaugmentation for remediation of chlorinated solvents contaminated clay. J Hazard Mater 213–214:311–317
Marin JA, Hernandez T, Garcia C (2005) Bioremediation of oil refinery sludge by landfarming in semiarid condition. Environ Res 98:185–195
Mark H, Kirsten S, Hung L, Richard GZ (2002) Bioventing of gasoline contaminated soil under varied laboratory conditions. SCE/EWRI of ASCE Environmental Engineering Conference, Niagara
Master ER, Lai VV, Kuipers B, Cullen WR, Mohn W (2002) Sequential anaerobic–aerobic treatment of soil contaminated with weathered Aroclor 1260. Environ Sci Technol 36:100–103
Mojiri A (2011) The potential of Corn (Zea mays) for phytoremediation of soil contaminated with cadmium and lead. J Biol Environ Sci 5:17–22
Møller J, Winther P, Lund L, Kirkebjerg K, Westermann P (1996) Bioventing of diesel oil-contaminated soil: comparison of degradation rates in soil based on actual oil concentration and on respirometric data. J Ind Microbiol Biotechnol 16:110–116
Nasseri S, Kalantary RR, Nourieh N, Naddafi K, Mahvi AH, Baradaran N (2010) Influence of bioaugmentation in biodegradation of PAHs-contaminated soil in bio-slurry phase reactor. J Environ Health Sci Eng 7:199–208
Natarajan MR, Wu WM, Nye J, Wang H (1996) Dechlorination of polychlorinated biphenyl congeners by an anaerobic microbial consortium. Appl Microbiol Biotechnol 46:673–677
Negri M, Manfredini A, Saponaro S, Sorlini C, Bonomo L, Valle A, Zanardini E (2004) Solid phase treatment of an aged soil contaminated by polycyclic aromatic hydrocarbons. J Environ Sci Health A Tox Hazard Subst Environ Eng 39:1–17
Nurzhanova A, Kulakow P, Rubin E, Rakhimbayev I, Sedlovskiy A, Zhambakin K, Kalugin S, Kolysheva E, Erickson L (2010) Obsolete pesticides pollution and phytoremediation of contaminated soil in Kazakhstan. Application of phytotechnologies for cleanup of industrial, agricultural, and wastewater contamination. NATO Science for Peace and Security Series C: Environmental Security, pp 87–111
Odencrantz JE, Johnson JG, Koenigsberg SS (1996) Enhanced intrinsic bioremediation of hydrocarbons using an oxygen-releasing compound. J Remed 6:99–114
Paudyn K, Rutter A, Kerry Rowe R, Poland JS (2008) Remediation of hydrocarbon contaminated soils in the Canadian Arctic by landfarming. Cold Regions Sci Technol 53:102–114
Phillips BM, Anderson BS, Hunt JW, Huntley SA, Tjeerdema RS, Kapellas N, Worcester K (2006) Solid-phase sediment toxicity identification evaluation in an agricultural stream. Environ Toxicol Chem 25:1671–1676
Pieper DH, Reineke W (2000) Engineering bacteria for bioremediation. Curr Opin Biotechnol 11:262–270
Pilon-Smits EAH (2005) Phytoremediation. Annu Rev Plant Biol 56:15–39
Rahman KSM, Thahira-Rahman J, McClean S, Marchant R, Banat IM (2002) Rhamnolipid biosurfactants production by strains of Pseudomonas aeruginosa using low cost raw materials. Biotechnol Prog 18:1277–1281
Reddy MS, Naresh B, Leela T, Prashanthi M, Madhusudhan N, Dhanasri G, Devi P (2010) Biodegradation of phenanthrene with biosurfactant production by a new strain of Brevibacillus sp. Biores Technol 101:7980–7983
Richard TL, Walker PL, Gossett JM (2006) Effects of oxygen on aerobic solid-state biodegradation kinetics. Biotechnol Prog 22:60–69
Ron EZ, Rosenberg E (2002) Biosurfactants and oil bioremediation. Curr Opin Biotechnol 13:249–252
Ryan CD, Jim L, Mehdi B (2012) Sustainable wind-driven bioventing at a petroleum hydrocarbon–impacted site. Remediation 22:65–78
Salinas-Martinez A, Delgado E, Pérez Andrade H, Hanad-Marroquin LA, Medrano-Roldán H (2008) Development of a bioremediation process biostimulation of native microbial consortium through the heap leaching technique. J Environ Manage 88:115–119
Salt DE, Smith RD, Raskin I (1998) Phytoremediation. Annu Rev Plant Phys 49:643–668
Sanscartier D, Laing T, Reimer K, Zeeb B (2009) Bioremediation of weathered petroleum hydrocarbon soil contamination in the Canadian High Arctic: laboratory and field studies. Chemosphere 77:1121–1126
Sanscartier D, Reimer K, Zeeb B, George K (2010) Management of hydrocarbon contaminated soil through bioremediation and landfill disposal at a remote location in Northern Canada. Can J Civil Eng 37:147–155
Schnoor JL, Licht LA, McCutcheton SC, Wolfe NL, Carreira LH (1995) Phytoremediation of organic and nutrient contaminants. Environ Sci Technol 29:318A–323A
Shewfelt K, Zytner RG (2001) The effects of nitrogen source and supply on bioventing of gasoline contaminated soil. In: Proceedings of the petroleum hydrocarbons and organic chemicals in ground water: prevention, detection, and remediation, Houston, TX, pp 265–272
Shewfelt K, Lee H, Zytner RG (2005) Optimization of nitrogen for bioventing of gasoline contaminated soil. J Environ Eng Sci 4:29–42
Singh NK, Rai UN, Singh M, Tripathi RD (2010) Impact of rhizobacteria on growth and chromium accumulation in Scirpus lacustris L. grown under chromium supplementation. J Environ Biol 31:709–714
Souza TS, Hencklein FA, Angelis DF, Gonçalves RA, Fontanetti CS (2009) The Allium cepa bioassay to evaluate landfarming soil, before and after the addition of rice hulls to accelerate organic pollutants biodegradation. Ecotoxicol Environ Saf 72:1363–1368
Sui H, Li X, Huang G, Jiang B (2006) A study on cometabolic bioventing for the in situ remediation of trichloroethylene. Environ Geochem Health 28:147–152
Telling ND, Coker VS, Cutting RS, van der Laan G, Pearce CI, Pattrick RAD, Arenholz E, Lloyd JR (2009) Remediation of Cr(VI) by biogenic magnetic nanoparticles: an X-ray magnetic circular dichroism study. Appl Phys Lett 95:163–701
Tovanabootr A, Semprini L, Dolan ME, Azizian M, Magar VS, Debacker D, Leeson A, Kempisty CD (2001) Cometabolic air sparging field demonstration with propane to remediate trichloroethene and cis-dichloroethene. In: 6th International in situ and on site bioremediation symposium, San Diego, pp 145–153
Tribelli PM, Di Martino C, López NI, RaigerIustman LJ (2012) Biofilm lifestyle enhances diesel bioremediation and biosurfactant production in the Antarctic polyhydroxyalkanoate producer Pseudomonas extremaustralis. Biodegradation 23(5):645–651
Urum K, Pekdemir T, Ross D, Grigson S (2005) Crude oil contaminated soil washing in air sparging assisted stirred tank reactor using biosurfactants. Chemosphere 60:334–343
Vargas-GarcíaMdel C, López MJ, Suárez-Estrella F, Moreno J (2012) Compost as a source of microbial isolates for the bioremediation of heavy metals: in vitro selection. Sci Total Environ 431:62–67
Venkata Mohan S, Prasanna D, Purushotham Reddy B, Sarma PN (2008) Ex situ bioremediation of pyrene contaminated soil in bio-slurry phase reactor operated in periodic discontinuous batch mode: Influence of bioaugmentation. Int Biodeterior Biodegradation 62:162–169
Wang JL, Zhao G, Wu LB (2005) Slurry-phase biological treatment of Nitro phenol using bioaugmentation technique. Biomed Environ Sci 18:77–81
Wang F, Dörfler U, Schmid M, Fischer D, Kinzel L, Scherb H, Munch J, Jiang X, Schroll R (2010) Homogeneous inoculation vs. microbial hot spots of isolated strain and microbial community: what is the most promising approach in remediating 1,2,4-TCB contaminated soils? Soil Biol Biochem 42:331–336
Wiegel J, Wu Q (2000) Microbial reductive dehalogenation of polychlorinated biphenyls. FEMS Microbiol Ecol 32:1–15
Wilkins MJ, Callister SJ, Miletto M, Williams KH, Nicora CD, Lovley DR, Long PE, Lipton MS (2011) Development of a biomarker for Geobacter activity and strain composition; proteogenomic analysis of the citrate synthase protein during bioremediation of U(VI). Microb Biotechnol 4:55–63
Xu M, Wu W, Wu L, He Z, Van Nostrand J, Deng Y, Luo J, Carley J, Ginder-Vogel M, Gentry T (2010) Responses of microbial community functional structures to uranium pilot-scale in situ bioremediation. ISME J 4:1060–1070
Zhang C, Joseph B, Shirley FN, Jim CS (2000) Slurry-phase biological treatment of 2,4-dinitrotoluene and 2,6-dinitrotoluene: role of bioaugmentation and effects of high dinitrotoluene concentrations. Environ Sci Technol 34:2810–2816
Zhang Q, Wang B, Cao Z, Yu Y (2012) Plasmid-mediated bioaugmentation for the degradation of chlorpyrifos in soil. J Hazard Mater 221–222:178–184
Zwiernik MJ, John F, Quensen III, Boyd SA (1998) FeSO4 amendments stimulate extensive anaerobic PCB dechlorination. Environ Sci Technol 32:3360–3365
Zytner RG, Salb A, Brook TR, Leunissen M, Stiver WH (2001) Bioremediation of diesel fuel contaminated soil. Can J Civil Eng 28:131–140
Acknowledgment
The authors would like to gratefully acknowledge Dr. S.R. Wate, Director, CSIR-NEERI for giving the permission to publish the manuscript.
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2014 Springer-Verlag Berlin Heidelberg
About this chapter
Cite this chapter
Juwarkar, A.A., Misra, R.R., Sharma, J.K. (2014). Recent Trends in Bioremediation. In: Parmar, N., Singh, A. (eds) Geomicrobiology and Biogeochemistry. Soil Biology, vol 39. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-41837-2_5
Download citation
DOI: https://doi.org/10.1007/978-3-642-41837-2_5
Published:
Publisher Name: Springer, Berlin, Heidelberg
Print ISBN: 978-3-642-41836-5
Online ISBN: 978-3-642-41837-2
eBook Packages: Biomedical and Life SciencesBiomedical and Life Sciences (R0)