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Motional Analysis of a Single Organic Molecule by TEM Using Nanocarbon Materials: Scope of Atomic Level Imaging and Spectroscopy

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Imaging and Manipulating Molecular Orbitals

Part of the book series: Advances in Atom and Single Molecule Machines ((AASMM))

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Abstract

The unique environment of single molecule analysis using nanocarbon materials is discussed in comparison with the conventional analysis of organic crystals by transmission electron microscopy (TEM). The methodology provides motional information of individual molecules in addition to the static images. The observed motions of molecules are mainly triggered by an electron beam used for imaging. A more advanced technique with aberration correctors, a low voltage electron beam, and a bright and atomic size electron probe will contribute to further understand the behaviors and reactions of molecules.

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References

  1. Uyeda, N., Kobayashi, T., Ishizuka, K., Fujiyoshi, Y.: High voltage electron microscopy for image discrimination of constituent atoms in crystals and molecules. Chem. Scr. 14, 47–61 (1979)

    Google Scholar 

  2. Zemlin, F., Reuber, E., Beckmann, E., Zeitler, E., Dorset, D.L.: Molecular resolution electron-micrographs of monolamellar paraffin crystals. Science 229(4712), 461–462 (1985)

    Article  ADS  Google Scholar 

  3. Smith, B.W., Monthioux, M., Luzzi, D.E.: Carbon nanotube encapsulated fullerenes: A unique class of hybrid materials. Chem. Phys. Lett. 315(1–2), 31–36 (1999)

    Article  ADS  Google Scholar 

  4. Takenobu, T., Takano, T., Shiraishi, M., Murakami, Y., Ata, M., Kataura, H., Achiba, Y., Iwasa, Y.: Stable and controlled amphoteric doping by encapsulation of organic molecules inside carbon nanotubes. Nat. Mat. 2, 683–688 (2003)

    Article  Google Scholar 

  5. Khlobystov, A.N., Britz, D.A., Briggs, G.A.D.: Molecules in carbon nanotubes. Acc. Chem. Res. 38(12), 901–909 (2005)

    Article  Google Scholar 

  6. Liu, Z., Koshino, M., Suenaga, K., Mrzel, A., Kataura, H., Iijima, S.: Transmission electron microscopy imaging of individual functional groups of fullerene derivatives. Phys. Rev. Lett. 96(8), 088304 (2006). doi:10.1103/PhysRevLett.96.088304

    Article  ADS  Google Scholar 

  7. Isaacson, M.S.: Inelastic scattering and beam damage of biological molecules. In: Siegel, B.M., Beaman, D.R. (eds.) Physical Aspects of Electron Microscopy and Microbeam Analysis, pp. 247–258. Wiley, New York (1975)

    Google Scholar 

  8. Koshino, M., Kurata, H., Isoda, S.: Study of structures at the boundary and defects in organic thin films of perchlorocoronene by high-resolution and analytical transmission electron microscopy. Ultramicroscopy 110(12), 1465–1474 (2010)

    Article  Google Scholar 

  9. Koshino, M., Tanaka, T., Solin, N., Suenaga, K., Isobe, H., Nakamura, E.: Imaging of single organic molecules in motion. Science 316(5826), 853 (2007). doi:10.1126/science.1138690

    Article  ADS  Google Scholar 

  10. Koshino, M., Solin, N., Tanaka, T., Isobe, H., Nakamura, E.: Imaging the passage of a single hydrocarbon chain through a nanopore. Nat. Nanotech. 3(10), 595–597 (2008)

    Article  Google Scholar 

  11. Solin, N., Koshino, M., Tanaka, T., Takenaga, S., Kataura, H., Isobe, H., Nakamura, E.: Imaging of aromatic amide molecules in motion. Chem. Lett. 36(10), 1208–1209 (2007). doi:10.1246/cl.2007.1208

    Article  Google Scholar 

  12. Nakamura, E., Koshino, M., Tanaka, T., Niimi, Y., Harano, K., Nakamura, Y., Isobe, H.: Imaging of conformational changes of biotinylated triamide molecules covalently bonded to a carbon nanotube surface. J. Am. Chem. Soc. 130(25), 7808–7809 (2008). doi:10.1021/ja8022708

    Article  Google Scholar 

  13. Nakamura, E., Koshino, M., Saito, T., Niimi, Y., Suenaga, K., Matsuo, Y.: Electron microscopic imaging of a single group 8 metal atom catalyzing C–C bond reorganization of fullerenes. J. Amer. Chem. Soc. 14151–14153, 14151–14153 (2011). doi:10.1021/ja203225n

    Article  Google Scholar 

  14. Kataura, H., Maniwa, Y., Kodama, T., Kikuchi, K., Hirahara, K., Suenaga, K., Iijima, S., Suzuki, S., Achiba, Y., Kratschmer, W.: High-yield fullerene encapsulation in single-wall carbon nanotubes. Synth. Met. 121(1–3), 1195–1196 (2001)

    Article  Google Scholar 

  15. Reimer, L.: Methods of detection of radiation damage in electron microscopy. Ultramicroscopy 14(3), 291–303 (1984)

    Article  Google Scholar 

  16. Liu, Z., Suenaga, K., Iijima, S.: Imaging the structure of an individual c60 fullerene molecule and its deformation process using HRTEM with atomic sensitivity. J. Amer. Chem. Soc. 129(21), 6666–6667 (2007)

    Article  Google Scholar 

  17. Koshino, M., Niimi, Y., Nakamura, E., Kataura, H., Okazaki, T., Suenaga, K., Iijima, S.: Analysis of the reactivity and selectivity of fullerene dimerization reactions at the atomic level. Nat. Chem. 2(2), 117–124 (2010)

    Article  Google Scholar 

  18. Sato, Y., Suenaga, K., Okubo, S., Okazaki, T., Iijima, S.: Structures of d5d–c80 and ih-er3n@c80 fullerenes and their rotation inside carbon nanotubes demonstrated by aberration-corrected electron microscopy. Nano Lett. 7(12), 3704–3708 (2007)

    Article  ADS  Google Scholar 

  19. Suenaga, K., Koshino, M.: Atom-by-atom spectroscopy at graphene edge. Nature 468, 1088–1090 (2010). doi:10.1038/nature09664

    Article  ADS  Google Scholar 

  20. Suenaga, K., Kobayashi, H., Koshino, M.: Core-level spectroscopy of point defects in single layer h-BN. Phys. Rev. Lett. 108(7), 075501 (2012)

    Article  ADS  Google Scholar 

  21. Suenaga, K., Kobayashi, H., Koshino, M.: Single atom imaging and spectroscopy in nanostructured carbon materials. MRS Bull. 37, 36–38 (2012). doi:10.1557/mrs.2011.339

    Article  Google Scholar 

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Acknowledgments

A part of the study is supported by Kakenhi from MEXT (23681026 and 22000008), JST-Kenkyu Kasoku, and JST-S-innovation.

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Correspondence to Masanori Koshino .

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Koshino, M., Suenaga, K. (2013). Motional Analysis of a Single Organic Molecule by TEM Using Nanocarbon Materials: Scope of Atomic Level Imaging and Spectroscopy. In: Grill, L., Joachim, C. (eds) Imaging and Manipulating Molecular Orbitals. Advances in Atom and Single Molecule Machines. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-38809-5_3

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