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Log-Ratio and Parallel Factor Analysis: An Approach to Analyze Three-Way Compositional Data

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Part of the book series: Studies in Computational Intelligence ((SCI,volume 448))

Abstract

For the exploratory analysis of three-way data, Parafac/Candecomp model (CP) is one of the most applied models to study three-way arrays when the data are approximately trilinear. It is a three-way generalization of PCA (Principal Component Analysis). CP model is a common name for low-rank decomposition of three-way arrays. In this approach, the three-dimensional data are decomposed into a series of factors, each relating to one of the three physical ways. When the data are particular ratios, as in the case of compositional data, this model should consider the special problems that compositional data pose. The principal aim of this paper is to describe how an analysis of compositional data by CP is possible and how the results should be interpreted.

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References

  • Aitchison, J.: The statistical analysis of compositional data (with discussion). Journal of the Royal Statistical Society. Series B (Methodological) 44(2), 139–177 (1982)

    MathSciNet  MATH  Google Scholar 

  • Aitchison, J.: The Statistical Analysis of Compositional Data. Chapman and Hall, London (1986)

    Book  MATH  Google Scholar 

  • Aitchison, J.: On criteria for measures of compositional difference. Mathematical Geology 22(4), 487–511 (1992)

    Article  MathSciNet  Google Scholar 

  • Aitchison, J., Ng, K.W.: The role of perturbation in compositional data analysis. Statistical Modelling 5, 173–185 (2005)

    Article  MathSciNet  MATH  Google Scholar 

  • Bro, R.: Multi-way analysis in the food industry: models, algorithms and applications. Ph.D. Thesis. University of Amsterdam and Royal Veterinary and Agricultural University, Denmark (1998)

    Google Scholar 

  • Caroll, J.D., Chang, J.J.: Analysis of individual differences in multidimensional scaling via N-way generalization of ’Eckart-Young’ decomposition. Psychometrika 35, 283–319 (1970)

    Article  Google Scholar 

  • Egozcue, J.J., Pawlowsky-Glahn, V., Mateu-Figueras, G., Barcelo-Vidal, C.: Isometric logratio transformations for compositional data analysis. Mathematical Geology 35(3), 279–300 (2003)

    Article  MathSciNet  Google Scholar 

  • Egozcue, J.J., Barceló-Vidal, C., Martín-Fernández, J.A., Jarauta-Bragulat, E., Díaz-Barrero, J.L., Gallo, M.: Partial least squares for compositional data: an approach based on the splines. Italian Journal of Applied Statistics 15, 349–358 (2003)

    Google Scholar 

  • Gallo, M.: Discriminant Partial Least Squares analysis on compositional data. Statistical Modelling 10(1), 41–56 (2010)

    Article  MathSciNet  Google Scholar 

  • Gallo, M.: Compositional data and three-mode analysis (2011) (submitted)

    Google Scholar 

  • Harshman, R.A.: Foundations of the PARAFAC procedure: models and conditions for an ’explanatory’ multi-mode factor analysis. UCLA Working Papers Phonet 16, 1–84 (1970)

    Google Scholar 

  • Hinkle, J., Rayens, W.: Partial least squares and compositional data: problems and alternatives. Chemometrics and Intelligent Laboratory Systems 30, 159–172 (1995)

    Article  Google Scholar 

  • Kiers, H.A.L.: Some procedures for displaying results from three-way methods. Journal of Chemometrics 14(3), 151–170 (2000)

    Article  MathSciNet  Google Scholar 

  • Kroonenberg, P.M.: Applied Multiway Data Analysis. Wiley, Hoboken (2008)

    Book  MATH  Google Scholar 

  • Martìn-Fernàndez, J.A., Barceló-Vidal, C., Pawlowsky-Glahn, V.: Measures of difference. for compositional data and hierarchical clustering. In: Buccianti, A., Nardi, G., Potenza, R. (eds.) IAMG 1998. De Frede, Napoli (1998)

    Google Scholar 

  • Mateu-Figueras, G.: Elements of Simplicial Linear Algebra and Geometry. In: Pawlowsky, V., Buccianti, A. (eds.) Compositional Data Analysis: Theory and Applications. Wiley, Chichester (2011)

    Google Scholar 

  • Pawlowsky-Glahn, V., Egozcue, J.J.: Geometric approach to statistical analysis on the simplex. Stochastic Environmental Research and Risk Assessment 15(5), 384–398 (2001)

    Article  MATH  Google Scholar 

  • Pawlowsky-Glahn, V. Egozcue, J.J. Tolosana-Delgado, R.: Lecture Notes on Compositional Data Analysis. Girona: Universitat. [Consultat 2 oct 2007]. (2007)

    Google Scholar 

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Correspondence to Michele Gallo .

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Gallo, M. (2013). Log-Ratio and Parallel Factor Analysis: An Approach to Analyze Three-Way Compositional Data. In: Proto, A., Squillante, M., Kacprzyk, J. (eds) Advanced Dynamic Modeling of Economic and Social Systems. Studies in Computational Intelligence, vol 448. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-32903-6_15

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  • DOI: https://doi.org/10.1007/978-3-642-32903-6_15

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-642-32902-9

  • Online ISBN: 978-3-642-32903-6

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