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Predicting Protein Subcellular Localization by Fusing Binary Tree and Error-Correcting Output Coding

  • Lili Guo
  • Yuehui Chen
Conference paper
Part of the Lecture Notes in Computer Science book series (LNCS, volume 7389)

Abstract

In this paper, a new method was applied to predict the protein subcellular localization. The features used in the paper were the Distance frequency (DF), the Physical and chemical composition (PCC) and the Pseudo Amino Acid composition (PseAA). The classifier was integrated by Binary tree and Error-Correcting Output Coding (ECOC) based six Artifical neural networks (ANN). The prediction ability was evaluated by 5-jackknife cross-validation. By comparing its results with other methods, such as Lei-SVM and ESVM, the experimental result demonstrated that our method outperformed their predictions, and indicate the new approach is feasible and effective.

Keywords

subcellular localization feature extraction Binary tree ECOC ANN ensemble classifier 

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Copyright information

© Springer-Verlag Berlin Heidelberg 2012

Authors and Affiliations

  • Lili Guo
    • 1
    • 2
  • Yuehui Chen
    • 1
    • 2
  1. 1.Computational Intelligence Lab, School of Information Science and EngineeringUniversity of JinanJinanP.R.China
  2. 2.Shandong Provincial Key Laboratory of Network Based Intelligent ComputingUniversity of JinanJinanP.R.China

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