Enabling Data and Compute Intensive Workflows in Bioinformatics

  • Gaurang Mehta
  • Ewa Deelman
  • James A. Knowles
  • Ting Chen
  • Ying Wang
  • Jens Vöckler
  • Steven Buyske
  • Tara Matise
Part of the Lecture Notes in Computer Science book series (LNCS, volume 7156)

Abstract

Accelerated growth in the field of bioinformatics has resulted in large data sets being produced and analyzed. With this rapid growth has come the need to analyze these data in a quick, easy, scalable, and reliable manner on a variety of computing infrastructures including desktops, clusters, grids and clouds. This paper presents the application of workflow technologies, and, specifically, Pegasus WMS, a robust scientific workflow management system, to a variety of bioinformatics projects from RNA sequencing, proteomics, and data quality control in population studies using GWAS data.

Keywords

workflows bioinformatics sequencing epigenetics proteomics 

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Copyright information

© Springer-Verlag Berlin Heidelberg 2012

Authors and Affiliations

  • Gaurang Mehta
    • 1
  • Ewa Deelman
    • 1
  • James A. Knowles
    • 2
  • Ting Chen
    • 3
  • Ying Wang
    • 3
    • 5
  • Jens Vöckler
    • 1
  • Steven Buyske
    • 4
  • Tara Matise
    • 4
  1. 1.USC Information Sciences InstituteUSA
  2. 2.Keck School of Medicine of USCUSA
  3. 3.University of Southern CaliforniaUSA
  4. 4.Rutgers UniversityUSA
  5. 5.Xiamen UniversityP.R. China

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