Algebraic and Numeric Biology pp 57-75
MABSys: Modeling and Analysis of Biological Systems
- Cite this paper as:
- Lemaire F., Ürgüplü A. (2012) MABSys: Modeling and Analysis of Biological Systems. In: Horimoto K., Nakatsui M., Popov N. (eds) Algebraic and Numeric Biology. Lecture Notes in Computer Science, vol 6479. Springer, Berlin, Heidelberg
We present the MABSys package which gathers, as much as possible, some functions to carry out the modeling of biochemical reaction networks, their qualitative analysis and the exact simplification of systems of ordinary differential equations. The main functions are illustrated with examples including the corresponding commands. Then we discuss Tyson’s negative feedback oscillator model and the parameters values for which this system oscillates.
Keywordssoftware design systems of ordinary differential equations qualitative analysis
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