Optimal Samples Selection from Gene Expression Microarray Data Using Relational Algebra and Clustering Technique

  • Soumen Kr. Pati
  • Asit Kr. Das
Part of the Advances in Intelligent and Soft Computing book series (AINSC, volume 132)

Abstract

Real data of natural and social sciences is often very high-dimensional. Dataset handling in high-dimensional spaces presents complicated problems, such as the degradation of data accessing, data manipulating as well as query processing performance. Dimensionality reduction efficiently tackles this problem and benefited us to visualize the intrinsic properties hidden in the dataset. The proposed method first generates decision attribute by computing the class label of each gene using clustering technique and subsequently computes the score of each sample of microarray cancerous gene data based on decision attribute using the division operation of relational algebra and select the samples with score below the average score as initial reduct. The reduced dataset is grouped into k clusters by k-means algorithm where, k is the set of values of decision attribute and matching factor of reduct is computed by considering the overlapping of clusters with the original classes of genes. Other samples are added iteratively one at a time based on their increasing score provided computed matching factor improved and thus final reduct known as optimal set of samples is obtained.

Keywords

Root Mean Square Error Singular Value Decomposition Relational Algebra Decision Attribute Gene Expression Dataset 
These keywords were added by machine and not by the authors. This process is experimental and the keywords may be updated as the learning algorithm improves.

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Copyright information

© Springer-Verlag Berlin Heidelberg 2012

Authors and Affiliations

  • Soumen Kr. Pati
    • 1
  • Asit Kr. Das
    • 2
  1. 1.Department of Information TechnologySt. Thomas’ College of Engineering and TechnologyKolkataIndia
  2. 2.Department of Computer Science and TechnologyBengal Engineering and Science UniversityHowrahIndia

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