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From Published Expression and Phenotype Data to Structured Knowledge: The Arabidopsis Gene Net Supplementary Database and Its Applications

  • Denis Ponomaryov
  • Nadezhda Omelianchuk
  • Victoria Mironova
  • Eugene Zalevsky
  • Nikolay Podkolodny
  • Eric Mjolsness
  • Nikolay Kolchanov
Part of the Lecture Notes in Computer Science book series (LNCS, volume 6581)

Abstract

We report on the development progress of the AGNS (Arabidopsis gene net supplementary) database and a AGNS-based information system for automation of research on the morphogenesis of Arabidopsis thaliana (L.), a well-known model plant in system biology.

Keywords

Developmental Stage Phenotype Data Shoot Apical Meristem Phenotypic Abnormality Formal Ontology 
These keywords were added by machine and not by the authors. This process is experimental and the keywords may be updated as the learning algorithm improves.

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Copyright information

© Springer-Verlag Berlin Heidelberg 2011

Authors and Affiliations

  • Denis Ponomaryov
    • 1
  • Nadezhda Omelianchuk
    • 2
  • Victoria Mironova
    • 2
  • Eugene Zalevsky
    • 2
    • 3
  • Nikolay Podkolodny
    • 2
  • Eric Mjolsness
    • 4
  • Nikolay Kolchanov
    • 2
    • 3
  1. 1.Institute of Informatics SystemsNovosibirskRussia
  2. 2.Institute of Cytology and GeneticsNovosibirskRussia
  3. 3.Novosibirsk State UniversityNovosibirskRussia
  4. 4.Institute for Genomics and BioinformaticsUniversity of CaliforniaIrvineUSA

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