Abstract
In this paper we present a Basic Bioinformatics Meta-searcher (BBMS), a web-based service aiming to simplify and integrate biological data searching through selected biological databases. BBMS facilitates biological data searching enabling multiple sources transparently, increasing research productivity as it avoids time consuming learning and parameterization of different search engines. As a complementary service, BBMS provides insight and links to common online bioinformatics tools. Users’ feedback when evaluating BBMS in terms of usability, usefulness and efficiency was very positive.
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References
Akula, S., Miriyala, R., Thota, H., Rao, A., Gedela, S.: Techniques for integrating -omics data. Bioinformation 3, 284–286 (2009)
Goble, C., Stevens, R.: State of the nation in data integration for bioinformatics. Journal of Biomedical Informatics 41, 687–693 (2008)
Stein, L.D.: Integrating biological databases. Nature Reviews. Genetics. 4, 337–345 (2003)
Dreilinger, D., Howe, A.E.: Experiences with selecting search engines using metasearch. ACM Transactions on Information Systems 15, 195–222 (1997)
Meng, W., Yu, C., Liu, K.: Building efficient and effective metasearch engines. ACM Computing Surveys 34, 48–89 (2002)
Vailaya, A.: An architecture for biological information extraction and representation. Bioinformatics 21, 430–438 (2004)
Lacroix, Z.: Biological data integration: wrapping data and tools. IEEE Transactions on Information Technology in Biomedicine 6, 123–128 (2002)
Diehn, M., Sherlock, G., Binkley, G., Jin, H., Matese, J.C., Hernandez-Boussard, T., Rees, C.A., Cherry, J.M., Botstein, D., Brown, P.O., Alizadeh, A.A.: SOURCE: a unified genomic resource of functional annotations, ontologies and gene expression data. Nucleic Acids Research 31, 219–223 (2003)
Liebel, U.: ’Harvester’: a fast meta search engine of human protein resources. Bioinformatics 20, 1962–1963 (2004)
Lushbough, C., Bergman, M.K., Lawrence, C.J., Jennewein, D., Brendel, V.: BioExtract Server - An Integrated Workflow-Enabling System to Access and Analyze Heterogeneous, Distributed Biomolecular Data. IEEE/ACM Transactions on Computational Biology and Bioinformatics 7, 12–24 (2010)
Lopes, P., Oliveira, J.L.: A Holistic Approach for Integrating Genomic Variation. In: Information, Presented at JBI 2010, Málaga, Spain (October 2010)
Carocho, M., Deusdado, S.: BBMS - Basic Bioinformatics Meta-Searcher, Presented at JBI 2010, Málaga, Spain (October 2010)
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Carocho, M.S., Deusdado, S. (2011). BBMS + + – Basic Bioinformatics Meta-searcher. In: Rocha, M.P., Rodríguez, J.M.C., Fdez-Riverola, F., Valencia, A. (eds) 5th International Conference on Practical Applications of Computational Biology & Bioinformatics (PACBB 2011). Advances in Intelligent and Soft Computing, vol 93. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-19914-1_8
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DOI: https://doi.org/10.1007/978-3-642-19914-1_8
Publisher Name: Springer, Berlin, Heidelberg
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