Skip to main content

Model-Based Segmentation

  • Chapter
  • First Online:

Part of the book series: Biological and Medical Physics, Biomedical Engineering ((BIOMEDICAL))

Summary

This chapter starts with a brief introduction into model-based segmentation, explaining the basic concepts and different approaches. Subsequently, two segmentation approaches are presented in more detail: First, the method of deformable simplex meshes is described, explaining the special properties of the simplex mesh and the formulation of the internal forces. Common choices for image forces are presented, and how to evolve the mesh to adapt to certain structures. Second, the method of point-based statistical shape models (SSMs) is described. The model construction process is explained and the point correspondence problem is treated in detail. Several approaches of how gray level appearance can be modeled are presented, and search algorithms that use this knowledge to segment the modeled structures in new images are described.

This is a preview of subscription content, log in via an institution.

Buying options

Chapter
USD   29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD   169.00
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD   219.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD   219.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Learn about institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  1. D. Terzopoulos, Multiresolution computation of visible-surface representation. thesis, MIT, Cambridge, MA, USA (1984)

    Google Scholar 

  2. M. Kass, A. Witkin, D. Terzopoulos, Int. J. Comput. Vis. 1, 321 (1988)

    Article  Google Scholar 

  3. D. Metaxas, D. Terzopoulos, in Proceedings of the CVPR (Maui, Hawai, 1991), pp. 337–343

    Google Scholar 

  4. H. Delingette, M. Hébert, K. Ikeuchi, Image Vis. Comput. 10(3), 132 (1992)

    Article  Google Scholar 

  5. H. Delingette, Modélisation, déformation et reconnaissance d’objets tridimensionnels a l’aide de maillages simplexes. Thèse de sciences, Ecole Centrale de Paris (1994)

    Google Scholar 

  6. D.L. Chopp, J.A. Sethian, J. Comput. Phys. 106, 77 (1993)

    Article  MathSciNet  ADS  MATH  Google Scholar 

  7. R. Malladi, J.A. Sethian, B.C. Vemuri, IEEE Trans. Pattern Anal. Mach. Intell. 17(2), 158 (1995)

    Article  Google Scholar 

  8. L.D. Cohen, I. Cohen, IEEE Trans. Pattern Anal. Mach. Intell. 15(11) (1993)

    Google Scholar 

  9. H. Delingette, Int. J. Comput. Vis. 32(2), 111 (1999)

    Article  Google Scholar 

  10. J. Montagnat, H. Delingette, G. Malandain, Lect. Notes Comput. Sci. 1679, 168 (1999)

    Article  Google Scholar 

  11. A. Herbulot, S.J. Besson, S. Duffner, M. Barlaud, G. Aubert, J. Math. Imaging Vis. 25(3), 365 (2006)

    Article  Google Scholar 

  12. A. Pitiot, H. Delingette, P. Thompson, N. Ayache, NeuroImage 23(Suppl 1), S85 (2004)

    Article  Google Scholar 

  13. A. Pitiot, A. Toga, N. Ayache, P.M. Thompson, in World Congress on Computational Intelligence (2002)

    Google Scholar 

  14. A. Ciampalini, P. Cignoni, C. Montani, R. Scopigno, Vis. Comput. 13(5), 228 (1997)

    Article  Google Scholar 

  15. L. Kobbelt, in Proceeding SIGGRAPH (2000), pp. 103–112

    Google Scholar 

  16. J. Montagnat, H. Delingette, Signal Process. 71(2), 173 (1998)

    Article  MATH  Google Scholar 

  17. J. Montagnat, H. Delingette, Med. Image Anal. 9(1), 87 (2005)

    Article  Google Scholar 

  18. J. Montagnat, H. Delingette, Lect. Notes Comput. Sci. 1205, 13 (1997)

    Article  Google Scholar 

  19. J. Costa, H. Delingette, S. Novellas, N. Ayache, Lect. Notes Comput. Sci. 4791, 252 (2007)

    Article  Google Scholar 

  20. A. Pitiot, H. Delingette, N. Ayache, P. Thompson, Lect. Notes Comput. Sci. 2879, 644 (2003)

    Article  Google Scholar 

  21. T.F. Cootes, C.J. Taylor, D.H. Cooper, J. Graham, Comput. Vis. Image Underst. 61(1), 38 (1995)

    Article  Google Scholar 

  22. M.E. Leventon, W.E.L. Grimson, O.D. Faugeras, in CVPR (2000), pp. I: 316–323

    Google Scholar 

  23. D.L. Chopp, J.A. Sethian, J. Exp. Math. 2(4), 235 (1993)

    MathSciNet  MATH  Google Scholar 

  24. H. Delingette, J. Montagnat, Lect. Notes Comp. Sci. (1843), 381 (2000)

    Google Scholar 

  25. T. McInerney, D. Terzopoulos, Med. Image Anal. 4, 73 (2000)

    Article  Google Scholar 

  26. T. Heimann, H.P. Meinzer, Med. Image Anal. 13(4), 543 (2009)

    Article  Google Scholar 

  27. P.J. Besl, N.D. McKay, IEEE Trans. Pattern Anal. Mach. Intell. 14(2), 239 (1992)

    Article  Google Scholar 

  28. A. Rangarajan, H. Chui, F.L. Bookstein, Lect. Notes Comput. Sci. 1230, 29 (1997)

    Google Scholar 

  29. C. Lorenz, N. Krahnstöver, Comput. Vis. Image Underst. 77(2), 175 (2000)

    Article  Google Scholar 

  30. Z. Zhao, E.K. Teoh, in Proc SPIE, vol. 5747 (2005), vol. 5747, pp. 303–314

    Google Scholar 

  31. M.S. Floater, K. Hormann, Advances in multiresolution for geometric modelling (Springer, New York, 2005), chap. Surface Parameterization: a Tutorial and Survey, pp. 157–86

    Google Scholar 

  32. A. Kelemen, G. Székely, G. Gerig, IEEE Trans. Med. Imaging 18(10), 828 (1999)

    Article  Google Scholar 

  33. R.H. Davies, C.J. Twining, T.F. Cootes, J.C. Waterton, C.J. Taylor, Lect. Notes Comput. Sci. 2352, 3 (2002)

    Article  Google Scholar 

  34. H.H. Thodberg, Lect. Notes Comput. Sci. 2732, 51 (2003)

    Article  Google Scholar 

  35. T. Heimann, I. Wolf, T.G. Williams, H.P. Meinzer, Lect. Notes Comput. Sci. 3565, 566 (2005)

    Article  Google Scholar 

  36. J. Cates, P.T. Fletcher, M.A. Styner, M.E. Shenton, R.T. Whitaker, Lect. Notes Comput. Sci. 4584, 333 (2007)

    Article  Google Scholar 

  37. C. Goodall, J. R. Stat. Soc. B 53(2), 285 (1991)

    MathSciNet  MATH  Google Scholar 

  38. I.T. Jolliffe, Principal Component Analysis, 2nd edn. (Springer, New York, 2002)

    MATH  Google Scholar 

  39. T.F. Cootes, C.J. Taylor, in Proceeding ICPR, vol. 1 (1994), vol. 1, pp. 63–67

    Google Scholar 

  40. M. de Bruijne, B. van Ginneken, M.A. Viergever, W.J. Niessen, Lect. Notes Comput. Sci. 2732, 136 (2003)

    Article  Google Scholar 

  41. T.F. Cootes, G.J. Edwards, C.J. Taylor, IEEE Trans. Pattern Anal. Mach. Intell. 23(6), 681 (2001)

    Article  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Tobias Heimann .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2010 Springer-Verlag Berlin Heidelberg

About this chapter

Cite this chapter

Heimann, T., Delingette, H. (2010). Model-Based Segmentation. In: Deserno, T. (eds) Biomedical Image Processing. Biological and Medical Physics, Biomedical Engineering. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-15816-2_11

Download citation

  • DOI: https://doi.org/10.1007/978-3-642-15816-2_11

  • Published:

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-642-15815-5

  • Online ISBN: 978-3-642-15816-2

  • eBook Packages: Physics and AstronomyPhysics and Astronomy (R0)

Publish with us

Policies and ethics