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Measuring Molecular Dynamics by FRAP, FCS, and SPT

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Abstract

In many research areas such as cell biology and drug delivery, it is important to obtain quantitative information on dynamic properties of molecules and nanoparticulate matter in biomaterials. Several complementary advanced fluorescence microscopy techniques have been developed for studying the mobility of molecules and particles on the micro- and nanoscale. In this chapter, the most important techniques are discussed: fluorescence recovery after photobleaching (FRAP), fluorescence correlation spectroscopy (FCS), and single particle tracking (SPT).

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References

  • Alvarez-Mancenido F, Braeckmans K, De Smedt SC, Demeester J, Landin M, Martinez-Pacheco R (2006) Characterization of diffusion of macromolecules in konjac glucomannan solutions and gels by fluorescence recovery after photobleaching technique. Int J Pharm 316:37–46

    Article  PubMed  CAS  Google Scholar 

  • Anderson CM, Georgiou GN, Morrison IEG, Stevenson GVW, Cherry RJ (1992) Tracking of cell-surface receptors by fluorescence digital imaging microscopy using a charge-coupled device camera. Low-density-lipoprotein and influenza-virus receptor mobility at 4-degrees-C. J Cell Sci 101:415–425

    PubMed  Google Scholar 

  • Anthony S, Zhang LF, Granick S (2006) Methods to track single-molecule trajectories. Langmuir 22:5266–5272

    Article  PubMed  CAS  Google Scholar 

  • Apgar J, Tseng Y, Fedorov E, Herwig MB, Almo SC, Wirtz D (2000) Multiple-particle tracking measurements of heterogeneities in solutions of actin filaments and actin bundles. Biophys J 79:1095–1106

    Article  PubMed  CAS  Google Scholar 

  • Axelrod D, Koppel DE, Schlessinger J, Elson E, Webb WW (1976) Mobility measurement by analysis of fluorescence photobleaching recovery kinetics. Biophys J 16:1055–1069

    Article  PubMed  CAS  Google Scholar 

  • Bacia K, Schwille P (2003) A dynamic view of cellular processes by in vivo fluorescence auto- and cross-correlation spectroscopy. Methods 29:74–85

    Article  PubMed  CAS  Google Scholar 

  • Bacia K, Majoul IV, Schwille P (2002) Probing the endocytic pathway in live cells using dual-color fluorescence cross-correlation analysis. Biophys J 83:1184–1193

    Article  PubMed  CAS  Google Scholar 

  • Bausinger R, von Gersdorff K, Braeckmans K, Ogris M, Wagner E, Brauchle C, Zumbusch A (2006) The transport of nanosized gene carriers unraveled by live-cell imaging. Angew Chem Int Ed 45:1568–1572

    Article  CAS  Google Scholar 

  • Berk DA, Yuan F, Leunig M, Jain RK (1993) Fluorescence photobleaching with spatial Fourier-analysis – measurement of diffusion in light-scattering media. Biophys J 65:2428–2436

    Article  PubMed  CAS  Google Scholar 

  • Blonk JCG, Don A, Van Aalst H, Birmingham JJ (1993) Fluorescence photobleaching recovery in the confocal scanning light-microscope. J Microsc 169:363–374

    Article  CAS  Google Scholar 

  • Braeckmans K, Peeters L, Sanders NN, De Smedt SC, Demeester J (2003) Three-dimensional fluorescence recovery after photobleaching with the confocal scanning laser microscope. Biophys J 85:2240–2252

    Article  PubMed  CAS  Google Scholar 

  • Braeckmans K, Remaut K, Demeester J, De Smedt SC (2007) Line-FRAP with the confocal laser scanning microscope for diffusion measurements in 3-D samples. Biophys J 92:2172–2183

    Article  PubMed  CAS  Google Scholar 

  • Braeckmans K, Vercauteren D, Demeester J, De Smedt SC (2009) Measuring molecular dynamics. Imaging Microsc 11(2):26–28

    Article  Google Scholar 

  • Brown E, Pluen A, Compton C, Boucher Y, Jain RK (2000) Measurement of diffusion coefficients in spontaneous human tumors. FASEB J 14:A167

    Google Scholar 

  • Brown EB, Boucher Y, Nasser S, Jain RK (2004) Measurement of macromolecular diffusion coefficients in human tumors. Microvasc Res 67:231–236

    Article  PubMed  CAS  Google Scholar 

  • Burke MD, Park JO, Srinivasarao M, Khan SA (2000) Diffusion of macromolecules in polymer solutions and gels: a laser scanning confocal microscopy study. Macromolecules 33:7500–7507

    Article  CAS  Google Scholar 

  • Buyens K, Lucas B, Raemdonck K, Braeckmans K, Vercammen J, Hendrix J, Engelborghs Y, De Smedt SC, Sanders NN (2008) A fast and sensitive method for measuring the integrity of siRNA-carrier complexes in full human serum. J Control Release 126:67–76

    Article  PubMed  CAS  Google Scholar 

  • Censi R, Vermonden T, van Steenbergen MJ, Deschout H, Braeckmans K, De Smedt SC, van Nostrum CF, di Martino P, Hennink WE (2009) Photopolymerized thermosensitive hydrogels for tailorable diffusion-controlled protein delivery. J Control Release 140:230–236

    Article  PubMed  CAS  Google Scholar 

  • Cheezum MK, Walker WF, Guilford WH (2001) Quantitative comparison of algorithms for tracking single fluorescent particles. Biophys J 81:2378–2388

    Article  PubMed  CAS  Google Scholar 

  • Chen Y, Muller JD, Berland KM, Gratton E (1999) Fluorescence fluctuation spectroscopy. Methods 19:234–252

    Article  PubMed  CAS  Google Scholar 

  • Cui ZQ, Zhang ZP, Zhang XE, Wen JK, Zhou YF, Xie WH (2005) Visualizing the dynamic behavior of poliovirus plus-strand RNA in living host cells. Nucleic Acids Res 33:3245–3252

    Article  PubMed  CAS  Google Scholar 

  • Cutts LS, Robberts PA, Adler J, Davies MC, Melia CD (1995) Determination of localized diffusion-coefficients in gels using confocal scanning laser microscopy. J Microsc 180:131–139

    Article  CAS  Google Scholar 

  • De Smedt SC, Lauwers A, Demeester J, Engelborghs Y, Demey G, Du M (1994) Structural information on hyaluronic-acid solutions as studied by probe diffusion experiments. Macromolecules 27:141–146

    Article  Google Scholar 

  • De Smedt SC, Meyvis TKL, Demeester J, Van Oostveldt P, Blonk JCG, Hennink WE (1997) Diffusion of macromolecules in dextran methacrylate solutions and gels as studied by confocal scanning laser microscopy. Macromolecules 30:4863–4870

    Article  Google Scholar 

  • De Smedt SC, Remaut K, Lucas B, Braeckmans K, Sanders NN, Demeester J (2005) Studying biophysical barriers to DNA delivery by advanced light microscopy. Adv Drug Deliv Rev 57:191–210

    Article  PubMed  Google Scholar 

  • Ehrenberg M, Rigler R (1974) Rotational Brownian-motion and fluorescence intensity fluctuations. Chem Phys 4:390–401

    Article  CAS  Google Scholar 

  • Elson EL (2001) Fluorescence correlation spectroscopy measures molecular transport in cells. Traffic 2:789–796

    Article  PubMed  CAS  Google Scholar 

  • Elson EL, Magde D (1974) Fluorescence correlation spectroscopy. 1. Conceptual basis and theory. Biopolymers 13:1–27

    Article  CAS  Google Scholar 

  • Fujiwara T, Ritchie K, Murakoshi H, Jacobson K, Kusumi A (2002) Phospholipids undergo hop diffusion in compartmentalized cell membrane. J Cell Biol 157:1071–1081

    Article  PubMed  CAS  Google Scholar 

  • Gosch M, Rigler R (2005) Fluorescence correlation spectroscopy of molecular motions and kinetics. Adv Drug Deliv Rev 57:169–190

    Article  PubMed  Google Scholar 

  • Haustein E, Schwille P (2004) Single-molecule spectroscopic methods. Curr Opin Struct Biol 14:531–540

    Article  PubMed  CAS  Google Scholar 

  • Hellriegel C, Kirstein J, Brauchle C, Latour V, Pigot T, Olivier R, Lacombe S, Brown R, Guieu V, Payrastre C, Izquierdo A, Mocho P (2004) Diffusion of single streptocyanine molecules in the nanoporous network of sol-gel glasses. J Phys Chem B 108:14699–14709

    Article  CAS  Google Scholar 

  • Hellriegel C, Kirstein J, Brauchle C (2005) Tracking of single molecules as a powerful method to characterize diffusivity of organic species in mesoporous materials. New J Phys 7:1–14

    Article  Google Scholar 

  • Kao HP, Abney JR, Verkman AS (1993) Determinants of the translational mobility of a small solute in cell cytoplasm. J Cell Biol 120:175–184

    Article  PubMed  CAS  Google Scholar 

  • Krichevsky O, Bonnet G (2002) Fluorescence correlation spectroscopy: the technique and its applications. Rep Prog Phys 65:251–297

    Article  CAS  Google Scholar 

  • Kubitscheck U, Wedekind P, Peters R (1998) Three-dimensional diffusion measurements by scanning microphotolysis. J Microsc 192:126–138

    Article  CAS  Google Scholar 

  • Kubitscheck U, Kuckmann O, Kues T, Peters R (2000) Imaging and tracking of single GFP molecules in solution. Biophys J 78:2170–2179

    Article  PubMed  CAS  Google Scholar 

  • Kusumi A, Sako Y, Yamamoto M (1993) Confined lateral diffusion of membrane-receptors as studied by single-particle tracking (nanovid microscopy) – effects of calcium-induced differentiation in cultured epithelial-cells. Biophys J 65:2021–2040

    Article  PubMed  CAS  Google Scholar 

  • Lakadamyali M, Rust MJ, Babcock HP, Zhuang XW (2003) Visualizing infection of individual influenza viruses. Proc Natl Acad Sci U S A 100:9280–9285

    Article  PubMed  CAS  Google Scholar 

  • Levi V, Gratton E (2007) Exploring dynamics in living cells by tracking single particles. Cell Biochem Biophys 48:1–15

    Article  PubMed  CAS  Google Scholar 

  • Levin MK, Carson JH (2004) Fluorescence correlation spectroscopy and quantitative cell biology. Differentiation 72:1–10

    Article  PubMed  CAS  Google Scholar 

  • Lopez A, Dupou L, Altibelli A, Trotard J, Tocanne JF (1988) Fluorescence recovery after photobleaching (FRAP) experiments under conditions of uniform disk illumination – critical comparison of analytical solutions, and a new mathematical method for calculation of the diffusion coefficient D. Biophys J 53:963–970

    Article  PubMed  CAS  Google Scholar 

  • Lukacs GL, Haggie P, Seksek O, Lechardeur D, Freedman N, Verkman AS (2000) Size-dependent DNA mobility in cytoplasm and nucleus. J Biol Chem 275:1625–1629

    Article  PubMed  CAS  Google Scholar 

  • Magde D, Webb WW, Elson E (1972) Thermodynamic fluctuations in a reacting system – measurement by fluorescence correlation spectroscopy. Phys Rev Lett 29:705–708

    Article  CAS  Google Scholar 

  • Magde D, Elson EL, Webb WW (1974) Fluorescence correlation spectroscopy. 2. Experimental realization. Biopolymers 13:29–61

    Article  PubMed  CAS  Google Scholar 

  • Magde D, Webb WW, Elson EL (1978) Fluorescence correlation spectroscopy. 3. Uniform translation and laminar-flow. Biopolymers 17:361–376

    Article  CAS  Google Scholar 

  • Mazza D, Braeckmans K (with equal contribution), Cella F, Testa I, Vercauteren D, Demeester J, De Smedt SC, Diaspro A (2008) A new FRAP/FRAPa method for three-dimensional diffusion measurements based on multiphoton excitation microscopy. Biophys J 95:3457–3469

    Google Scholar 

  • Olmsted SS, Padgett JL, Yudin AI, Whaley KJ, Moench TR, Cone RA (2001) Diffusion of macromolecules and virus-like particles in human cervical mucus. Biophys J 81:1930–1937

    Article  PubMed  CAS  Google Scholar 

  • Papadopoulos MC, Binder DK, Verkman AS (2004) Enhanced macromolecular diffusion in brain extracellular space in mouse models of vasogenic edema measured by cortical surface photobleaching. FASEB J 18:425–427

    Google Scholar 

  • Peeters L, Sanders NN, Braeckmans K, Boussery K, de Voorde JV, De Smedt SC, Demeester J (2005) Vitreous: a barrier to nonviral ocular gene therapy. Investig Ophthalmol Vis Sci 46:3553–3561

    Article  Google Scholar 

  • Peters R, Peters J, Tews KH, Bahr W (1974) Microfluorimetric study of translational diffusion in erythrocyte-membranes. Biochim Biophys Acta 367:282–294

    Article  PubMed  CAS  Google Scholar 

  • Pluen A, Boucher Y, Ramanujan S, McKee TD, Gohongi T, di Tomaso E, Brown EB, Izumi Y, Campbell RB, Berk DA, Jain RK (2001) Role of tumor-host interactions in interstitial diffusion of macromolecules: cranial vs. subcutaneous tumors. Proc Natl Acad Sci U S A 98:4628–4633

    Article  PubMed  CAS  Google Scholar 

  • Politz JC, Browne ES, Wolf DE, Pederson T (1998) Intranuclear diffusion and hybridization state of oligonucleotides measured by fluorescence correlation spectroscopy in living cells. Proc Natl Acad Sci U S A 95:6043–6048

    Article  PubMed  CAS  Google Scholar 

  • Ramanujan S, Pluen A, McKee TD, Brown EB, Boucher Y, Jain RK (2002) Diffusion and convection in collagen gels: implications for transport in the tumor interstitium. Biophys J 83:1650–1660

    Article  PubMed  CAS  Google Scholar 

  • Remaut K, Lucas B, Raemdonck K, Braeckmans K, Demeester J, De Smedt SC (2007a) Can we better understand the intracellular behavior of DNA nanoparticles by fluorescence correlation spectroscopy? J Control Release 121:49–63

    Article  PubMed  CAS  Google Scholar 

  • Remaut K, Sanders NN, De Geest BG, Braeckmans K, Demeester J, De Smedt SC (2007b) Nucleic acid delivery: where material sciences and bio-sciences meet. Mater Sci Eng R Rep 58:117–161

    Article  Google Scholar 

  • Ritchie K, Shan XY, Kondo J, Iwasawa K, Fujiwara T, Kusumi A (2005) Detection of non-Brownian diffusion in the cell membrane in single molecule tracking. Biophys J 88:2266–2277

    Article  PubMed  CAS  Google Scholar 

  • Saltzman WM, Radomsky ML, Whaley KJ, Cone RA (1994) Antibody diffusion in human cervical-mucus. Biophys J 66:508–515

    Article  PubMed  CAS  Google Scholar 

  • Saxton MJ, Jacobson K (1997) Single-particle tracking: applications to membrane dynamics. Annu Rev Biophys Biomol Struct 26:373–399

    Article  PubMed  CAS  Google Scholar 

  • Sbalzarini IF, Koumoutsakos P (2005) Feature point tracking and trajectory analysis for video imaging in cell biology. J Struct Biol 151:182–195

    Article  PubMed  CAS  Google Scholar 

  • Schutz GJ, Schindler H, Schmidt T (1997) Single-molecule microscopy on model membranes reveals anomalous diffusion. Biophys J 73:1073–1080

    Article  PubMed  CAS  Google Scholar 

  • Schwille P (2001) Fluorescence correlation spectroscopy and its potential for intracellular applications. Cell Biochem Biophys 34:383–408

    Article  PubMed  CAS  Google Scholar 

  • Schwille P, MeyerAlmes FJ, Rigler R (1997) Dual-color fluorescence cross-correlation spectroscopy for multicomponent diffusional analysis in solution. Biophys J 72:1878–1886

    Article  PubMed  CAS  Google Scholar 

  • Sonnleitner A, Schutz GJ, Schmidt T (1999) Free Brownian motion of individual lipid molecules in biomembranes. Biophys J 77:2638–2642

    Article  PubMed  CAS  Google Scholar 

  • Suh J, Dawson M, Hanes J (2005) Real-time multiple-particle tracking: applications to drug and gene delivery. Adv Drug Deliv Rev 57:63–78

    Article  PubMed  CAS  Google Scholar 

  • Thompson NL, Lieto AM, Allen NW (2002a) Recent advances in fluorescence correlation spectroscopy. Curr Opin Struct Biol 12:634–641

    Article  PubMed  Google Scholar 

  • Thompson RE, Larson DR, Webb WW (2002b) Precise nanometer localization analysis for individual fluorescent probes. Biophys J 82:2775–2783

    Article  PubMed  CAS  Google Scholar 

  • Tsay TT, Jacobson KA (1991) Spatial Fourier-analysis of video photobleaching measurements – principles and optimization. Biophys J 60:360–368

    Article  PubMed  CAS  Google Scholar 

  • van de Manakker F, Braeckmans K, el Morabit N, De Smedt SC, van Nostrum CF, Hennink WE (2009) Protein-release behavior of self-assembled PEG-beta-cyclodextrin/PEG-cholesterol hydrogels. Adv Funct Mater 19:2992–3001

    Article  Google Scholar 

  • Vrljic M, Nishimura SY, Brasselet S, Moerner WE, McConnell HM (2002) Translational diffusion of individual class II MHC membrane proteins in cells. Biophys J 83:2681–2692

    Article  PubMed  CAS  Google Scholar 

  • Wedekind P, Kubitscheck U, Peters R (1994) Scanning microphotolysis – a new photobleaching technique based on fast intensity modulation of a scanned laser-beam and confocal imaging. J Microsc 176:23–33

    Article  PubMed  CAS  Google Scholar 

  • Wedekind P, Kubitscheck U, Heinrich O, Peters R (1996) Line-scanning microphotolysis for diffraction-limited measurements of lateral diffusion. Biophys J 71:1621–1632

    Article  PubMed  CAS  Google Scholar 

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Braeckmans, K., Deschout, H., Demeester, J., De Smedt, S.C. (2011). Measuring Molecular Dynamics by FRAP, FCS, and SPT. In: Diaspro, A. (eds) Optical Fluorescence Microscopy. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-15175-0_9

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