Abstract
The genus Lotus contains many dozens of species distributed worldwide, including cultivated forage, such as L. corniculatus, L. glaber, L. subbiflorus, and L. uliginosus. Among these, L. japonicus has been widely used as a model system to investigate the genetic background of legume-specific phenomena such as symbiotic nitrogen fixation. Substantial resources of information and experimental materials including genomic and cDNA sequences, corresponding DNA libraries, and high-density linkage maps demonstrate L. japonicus as an excellent model system. Resource centers for Lotus species have been established with the aim to support the development of legume researches by providing access to their research material. Based on these material and information resources, transfer of knowledge from L. japonicus to forage Lotus species using both traditional and advanced approaches is currently ongoing.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
Arambarri A (1999) Illustrated catalogue of Lotus L. seeds (Fabaceae). In: Beuselinck P (ed) Trefoil: the science and technology of Lotus. American Society of Agronomy, Madison, WI, pp 21–41
Arimura G, Ozawa R, Kugimiya S, Takabayashi J, Bohlmann J (2005) Herbivore-induced defense response in a model legume. Two-spotted spider mites induce emission of (E)-beta-ocimene and transcript accumulation of (E)-beta-ocimene synthase in Lotus japonicus. Plant Physiol 135:1976–1983
Armstead IP, Webb KJ (1987) Effect of age and type of tissue on genetic transformation of Lotus corniculatus by Agrobacterium tumefaciens. Plant Cell Tissue Organ Cult 9:95–101
Asamizu E, Nakamura Y, Sato S, Tabata S (2004) Characteristics of the Lotus japonicus gene repertoire deduced from large-scale expressed sequence tag (EST) analysis. Plant Mol Biol 54:405–414
Asamizu E, Nakamura Y, Sato S, Tabata S (2005) Comparison of the transcript profiles from the root and the nodulating root of the model legume Lotus japonicus by serial analysis of gene expression. Mol Plant Microbe Interact 18:487–498
Cannon SB, Sterck L, Rombauts S, Sato S, Cheung F, Gouzy J, Wang X, Mudge J, Vasdewani J, Schiex T, Spannagl M, Monaghan E, Nicholson C, Humphray SJ, Schoof H, Mayer KF, Rogers J, Quétier F, Oldroyd GE, Debellé F, Cook DR, Retzel EF, Roe BA, Town CD, Tabata S, Van de Peer Y, Young ND (2006) Legume genome evolution viewed through the Medicago truncatula and Lotus japonicus genomes. Proc Natl Acad Sci USA 103:14959–14964
Castro IV, Sá-Pereira P, Simões F, Matos JA, Ferreira E (2007) Use of Lotus/Rhizobium symbiosis in regeneration of polluted soils. Lotus Newsl 37:87–88
Choi HK, Mun JH, Kim DJ, Zhu H, Baek JM, Mudge J, Roe B, Ellis N, Doyle J, Kiss GB, Young ND, Cook DR (2004) Estimating genome conservation between crop and model legume species. Proc Natl Acad Sci USA 101:15289–15294
Choi HK, Luckow MA, Doyle J, Cook DR (2006) Development of nuclear gene-derived molecular markers linked to legume genetic maps. Mol Genet Genomics 276:56–70
Colebatch G, Desbrosses G, Ott T, Krusell L, Montanari O, Kloska S, Kopka J, Udvardi MK (2004) Global changes in transcription orchestrate metabolic differentiation during symbiotic nitrogen fixation in Lotus japonicus. Plant J 39:487–512
Dam S, Laursen BS, Ornfelt JH, Jochimsen B, Staerfeldt HH, Friis C, Nielsen K, Goffard N, Besenbacher S, Krusell L, Sato S, Tabata S, Thøgersen IB, Enghild JJ, Stougaard J (2009) The proteome of seed development in the model legume Lotus japonicus. Plant Physiol 149:1325–1340
De Marchis F, Bellucci M, Arcioni S (2003) Measuring gene flow from two birdsfoot trefoil (Lotus corniculatus) field trials using transgenes as tracer markers. Mol Ecol 12:1681–1685
Desbrosses GG, Kopka J, Udvardi MK (2005) Lotus japonicus metabolic profiling. Development of gas chromatography-mass spectrometry resources for the study of plant–microbe interactions. Plant Physiol 137:1302–1318
Endo M, Kokubun T, Takahata Y, Higashitani A, Tabata S, Watanabe M (2000) Analysis of expressed sequence tags of flower buds in Lotus japonicus. DNA Res 30:213–216
Endo M, Matsubara H, Kokubun T, Masuko H, Takahata Y, Tsuchiya T, Fukuda H, Demura T, Watanabe M (2002) The advantages of cDNA microarray as an effective tool for identification of reproductive organ-specific genes in a model legume, Lotus japonicus. FEBS Lett 514:229–237
Fjellstrom RG, Steiner JJ, Beuselinck PR (2003) Tetrasomic linkage mapping of RFLP, PCR, and isozyme loci in Lotus corniculatus L. Crop Sci 43:1006–1020
Forslund K, Morant M, Jørgensen B, Olsen CE, Asamizu E, Sato S, Tabata S, Bak S (2004) Biosynthesis of the nitrile glucosides rhodiocyanoside A and D and the cyanogenic glucosides lotaustralin and linamarin in Lotus japonicus. Plant Physiol 135:71–84
Gondo T, Sato S, Okumura K, Tabata S, Akashi R, Isobe S (2007) Quantitative trait locus analysis of multiple agronomic traits in the model legume Lotus japonicus. Genome 50:627–637
Grant WF (2004) List of Lotus corniculatus (Birdsfoot trefoil), L. uliginosus/ L. pedunculatus (Big trefoil), L. glaber (Narrowleaf trefoil) and L. subbiflorus cultivars. Lotus Newsl 34:12–26
Grant WF, Small E (1995) The origin of the Lotus corniculatus (Fabaceae) complex: a synthesis of diverse evidence. Can J Bot 74:975–989
Green SL (2005) U.S. Germplasm Collection of Lotus: activities over the last decade. Lotus Newsl 35:106–108
Handberg K, Stougaard J (1992) Lotus japonicus, an autogamous, diploid legume species for classical and molecular genetics. Plant J 2:487–496
Hayashi M, Miyahara A, Sato S, Kato T, Yoshikawa M, Taketa M, Hayashi M, Pedrosa A, Onda R, Imaizumi-Anraku H, Bachmair A, Sandal N, Stougaard J, Murooka Y, Tabata S, Kawasaki S, Kawaguchi M, Harada K (2001) Construction of a genetic linkage map of the model legume Lotus japonicus using an intraspecific F2 population. DNA Res 8:301–310
Isobe S, Akashi R (2004) Legume base: a new resource center of Lotus japonicus and Glycine max. Lotus Newsl 34:27–30
Izaguirre P, Beyhaut R (1998) Loteae. In: Las leguminosas en Uruguay y regiones vecinas. Editorial Agropecuaria Hemisferio Sur SRL, pp 314–327
Kawaguchi M (2000) Lotus japonicus ‘Miyakojima’ MG-20: an early-flowering accession suitable for indoor handling. J Plant Res 113:507–509
Kawaguchi M, Motomura T, Imaizumi-Anraku H, Akao S, Kawasaki S (2001) Providing the basis for genomics in Lotus japonicus: the accessions Miyakojima and Gifu are appropriate crossing partners for genetic analyses. Mol Genet Genomics 266:157–166
Kawaguchi M, Pedrosa-Harand A, Yano K, Hayashi M, Murooka Y, Saito K, Nagata T, Namai K, Nishida H, Shibata D, Sato S, Tabata S, Hayashi M, Harada K, Sandal N, Stougaard J, Bachmair A, Grant W (2005) Lotus burttii takes a position of the third corner in the Lotus molecular genetics triangle. DNA Res 12:69–77
Kouchi H, Shimomura K, Hata S, Hirota A, Wu GJ, Kumagai H, Tajima S, Suganuma N, Suzuki A, Aoki T, Hayashi M, Yokoyama T, Ohyama T, Asamizu E, Kuwata C, Shibata D, Tabata S (2004) Large-scale analysis of gene expression profiles during early stages of root nodule formation in a model legume, Lotus japonicus. DNA Res 11:263–274
Madsen LH, Fukai E, Radutoiu S, Yost CK, Sandal N, Schauser L, Stougaard J (2005) LORE1, an active low-copy-number TY3-gypsy retrotransposon family in the model legume Lotus japonicus. Plant J 44:372–381
McCallum CM, Comai L, Greene EA, Henikoff S (2000) Targeting induced local lesions in genomes (TILLING) for plant functional genomics. Plant Physiol 123:439–442
Papadopoulos Y, Kelman W (1999) Traditional breeding of Lotus species. In: Beuselinck P (ed) Trefoil: the science and technology of Lotus. American Society of Agronomy, Madison, WI, pp 187–198
Perry JA, Wang TL, Welham TJ, Gardner S, Pike JM, Yoshida S, Parniske M (2003) A TILLING reverse genetics tool and a web-accessible collection of mutants of the legume Lotus japonicus. Plant Physiol 131:866–871
Sandal N, Krusell L, Radutoiu S, Olbryt M, Pedrosa A, Stracke S, Sato S, Kato T, Tabata S, Parniske M, Bachmair A, Ketelsen T, Stougaard J (2002) A genetic linkage map of the model legume Lotus japonicus and strategies for fast mapping of new loci. Genetics 161:1673–1683
Sandal N, Petersen TR, Murray J, Umehara Y, Karas B, Yano K, Kumagai H, Yoshikawa M, Saito K, Hayashi M, Murakami Y, Wang X, Hakoyama T, Imaizumi-Anraku H, Sato S, Kato T, Chen W, Hossain S, Shibata S, Wang TL, Yokota K, Larsen K, Kanamori N, Madsen E, Radutoiu S, Madsen LH, Radu TG, Krusell L, Ooki Y, Banba M, Betti M, Rispail N, Skøt L, Tuck E, Perry J, Yoshida S, Vickers K, Pike J, Mulder L, Charpentier M, Müller J, Ohtomo R, Kojima T, Ando S, Marquez J, Gresshoff PM, Harada K, Webb J, Hata S, Suganuma N, Kouchi H, Kawasaki S, Tabata S, Hayashi M, Parniske M, Szczyglowski K, Kawaguchi M, Stougaard J (2006) Genetics of symbiosis in Lotus japonicus: recombinant inbred lines, comparative genetic maps, and map position of 35 symbiotic loci. Mol Plant Microbe Interact 19:80–91
Sato S, Kaneko T, Nakamura Y, Asamizu E, Kato T, Tabata S (2001) Structural analysis of a Lotus japonicus genome. I. Sequence features and mapping of fifty-six TAC clones which cover the 5.4 Mbp regions of the genome. DNA Res 8:311–318
Sato S, Nakamura Y, Kaneko T, Asamizu E, Kato T, Nakao M, Sasamoto S, Watanabe A, Ono A, Kawashima K, Fujishiro T, Katoh M, Kohara M, Kishida Y, Minami C, Nakayama S, Nakazaki N, Shimizu Y, Shinpo S, Takahashi C, Wada T, Yamada M, Ohmido N, Hayashi M, Fukui K, Baba T, Nakamichi T, Mori H, Tabata S (2008) Genome structure of the legume, Lotus japonicus. DNA Res 15:227–239
Schauser L, Roussis A, Stiller J, Stougaard J (1999) A plant regulator controlling development of symbiotic root nodules. Nature 402:191–195
Shimada N, Sasaki R, Sato S, Kaneko T, Tabata S, Aoki T, Ayabe S (2004) A comprehensive analysis of six dihydroflavonol 4-reductases encoded by a gene cluster of the Lotus japonicus genome. J Exp Bot 56:2573–2785
Shimada N, Sato S, Akashi T, Nakamura Y, Tabata S, Ayabe S, Aoki T (2007) Genome-wide analyses of the structural gene families involved in the legume-specific 5-deoxyisoflavonoid biosynthesis of Lotus japonicus. DNA Res 14:25–36
Szczyglowski K, Hamburger D, Kapranov P, de Bruijn FJ (1997) Construction of a Lotus japonicus late nodulin expressed sequence tag library and identification of novel nodule-specific genes. Plant Physiol 114:1335–1346
Thykjaer T, Stiller J, Handberg K, Jones J, Stougaard J (1995) The maize transposable element Ac is mobile in the legume Lotus japonicus. Plant Mol Biol 27:981–993
Varshney RK, Hoisington DA, Tyagi AK (2006) Advances in cereal genomics and applications in crop breeding. Trends Biotechnol 24:490–499
Vessabutr S, Grant WF (1995) Isolation, culture and regeneration of protoplast from birdsfoot trefoil (Lotus corniculatus). Plant Cell Tissue Organ Cult 49:9–15
Wagner C, Sefkow M, Kopka J (2003) Construction and application of a mass spectral and retention time index database generated from plant GC/EI-TOF-MS metabolite profiles. Phytochemistry 62:887–900
Wienkoop S, Saalbach G (2003) Proteome analysis. Novel proteins identified at the peribacteroid membrane from Lotus japonicus root nodules. Plant Physiol 131:1080–1090
Zhu H, Choi HK, Cook DR, Shoemaker RC (2005) Bridging model and crop legumes through comparative genomics. Plant Physiol 137:1189–1196
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2011 Springer-Verlag Berlin Heidelberg
About this chapter
Cite this chapter
Sato, S., Tabata, S. (2011). Lotus. In: Kole, C. (eds) Wild Crop Relatives: Genomic and Breeding Resources. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-14387-8_8
Download citation
DOI: https://doi.org/10.1007/978-3-642-14387-8_8
Published:
Publisher Name: Springer, Berlin, Heidelberg
Print ISBN: 978-3-642-14386-1
Online ISBN: 978-3-642-14387-8
eBook Packages: Biomedical and Life SciencesBiomedical and Life Sciences (R0)