Skip to main content
  • 1665 Accesses

Abstract

The genus Lotus contains many dozens of species distributed worldwide, including cultivated forage, such as L. corniculatus, L. glaber, L. subbiflorus, and L. uliginosus. Among these, L. japonicus has been widely used as a model system to investigate the genetic background of legume-specific phenomena such as symbiotic nitrogen fixation. Substantial resources of information and experimental materials including genomic and cDNA sequences, corresponding DNA libraries, and high-density linkage maps demonstrate L. japonicus as an excellent model system. Resource centers for Lotus species have been established with the aim to support the development of legume researches by providing access to their research material. Based on these material and information resources, transfer of knowledge from L. japonicus to forage Lotus species using both traditional and advanced approaches is currently ongoing.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 129.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 169.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 169.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  • Arambarri A (1999) Illustrated catalogue of Lotus L. seeds (Fabaceae). In: Beuselinck P (ed) Trefoil: the science and technology of Lotus. American Society of Agronomy, Madison, WI, pp 21–41

    Google Scholar 

  • Arimura G, Ozawa R, Kugimiya S, Takabayashi J, Bohlmann J (2005) Herbivore-induced defense response in a model legume. Two-spotted spider mites induce emission of (E)-beta-ocimene and transcript accumulation of (E)-beta-ocimene synthase in Lotus japonicus. Plant Physiol 135:1976–1983

    Article  Google Scholar 

  • Armstead IP, Webb KJ (1987) Effect of age and type of tissue on genetic transformation of Lotus corniculatus by Agrobacterium tumefaciens. Plant Cell Tissue Organ Cult 9:95–101

    Article  Google Scholar 

  • Asamizu E, Nakamura Y, Sato S, Tabata S (2004) Characteristics of the Lotus japonicus gene repertoire deduced from large-scale expressed sequence tag (EST) analysis. Plant Mol Biol 54:405–414

    Article  PubMed  Google Scholar 

  • Asamizu E, Nakamura Y, Sato S, Tabata S (2005) Comparison of the transcript profiles from the root and the nodulating root of the model legume Lotus japonicus by serial analysis of gene expression. Mol Plant Microbe Interact 18:487–498

    Article  PubMed  CAS  Google Scholar 

  • Cannon SB, Sterck L, Rombauts S, Sato S, Cheung F, Gouzy J, Wang X, Mudge J, Vasdewani J, Schiex T, Spannagl M, Monaghan E, Nicholson C, Humphray SJ, Schoof H, Mayer KF, Rogers J, Quétier F, Oldroyd GE, Debellé F, Cook DR, Retzel EF, Roe BA, Town CD, Tabata S, Van de Peer Y, Young ND (2006) Legume genome evolution viewed through the Medicago truncatula and Lotus japonicus genomes. Proc Natl Acad Sci USA 103:14959–14964

    Article  PubMed  CAS  Google Scholar 

  • Castro IV, Sá-Pereira P, Simões F, Matos JA, Ferreira E (2007) Use of Lotus/Rhizobium symbiosis in regeneration of polluted soils. Lotus Newsl 37:87–88

    Google Scholar 

  • Choi HK, Mun JH, Kim DJ, Zhu H, Baek JM, Mudge J, Roe B, Ellis N, Doyle J, Kiss GB, Young ND, Cook DR (2004) Estimating genome conservation between crop and model legume species. Proc Natl Acad Sci USA 101:15289–15294

    Article  PubMed  CAS  Google Scholar 

  • Choi HK, Luckow MA, Doyle J, Cook DR (2006) Development of nuclear gene-derived molecular markers linked to legume genetic maps. Mol Genet Genomics 276:56–70

    Article  PubMed  CAS  Google Scholar 

  • Colebatch G, Desbrosses G, Ott T, Krusell L, Montanari O, Kloska S, Kopka J, Udvardi MK (2004) Global changes in transcription orchestrate metabolic differentiation during symbiotic nitrogen fixation in Lotus japonicus. Plant J 39:487–512

    Article  PubMed  Google Scholar 

  • Dam S, Laursen BS, Ornfelt JH, Jochimsen B, Staerfeldt HH, Friis C, Nielsen K, Goffard N, Besenbacher S, Krusell L, Sato S, Tabata S, Thøgersen IB, Enghild JJ, Stougaard J (2009) The proteome of seed development in the model legume Lotus japonicus. Plant Physiol 149:1325–1340

    Article  PubMed  CAS  Google Scholar 

  • De Marchis F, Bellucci M, Arcioni S (2003) Measuring gene flow from two birdsfoot trefoil (Lotus corniculatus) field trials using transgenes as tracer markers. Mol Ecol 12:1681–1685

    Article  PubMed  Google Scholar 

  • Desbrosses GG, Kopka J, Udvardi MK (2005) Lotus japonicus metabolic profiling. Development of gas chromatography-mass spectrometry resources for the study of plant–microbe interactions. Plant Physiol 137:1302–1318

    Article  PubMed  CAS  Google Scholar 

  • Endo M, Kokubun T, Takahata Y, Higashitani A, Tabata S, Watanabe M (2000) Analysis of expressed sequence tags of flower buds in Lotus japonicus. DNA Res 30:213–216

    Article  Google Scholar 

  • Endo M, Matsubara H, Kokubun T, Masuko H, Takahata Y, Tsuchiya T, Fukuda H, Demura T, Watanabe M (2002) The advantages of cDNA microarray as an effective tool for identification of reproductive organ-specific genes in a model legume, Lotus japonicus. FEBS Lett 514:229–237

    Article  PubMed  CAS  Google Scholar 

  • Fjellstrom RG, Steiner JJ, Beuselinck PR (2003) Tetrasomic linkage mapping of RFLP, PCR, and isozyme loci in Lotus corniculatus L. Crop Sci 43:1006–1020

    Article  CAS  Google Scholar 

  • Forslund K, Morant M, Jørgensen B, Olsen CE, Asamizu E, Sato S, Tabata S, Bak S (2004) Biosynthesis of the nitrile glucosides rhodiocyanoside A and D and the cyanogenic glucosides lotaustralin and linamarin in Lotus japonicus. Plant Physiol 135:71–84

    Article  PubMed  CAS  Google Scholar 

  • Gondo T, Sato S, Okumura K, Tabata S, Akashi R, Isobe S (2007) Quantitative trait locus analysis of multiple agronomic traits in the model legume Lotus japonicus. Genome 50:627–637

    Article  PubMed  Google Scholar 

  • Grant WF (2004) List of Lotus corniculatus (Birdsfoot trefoil), L. uliginosus/ L. pedunculatus (Big trefoil), L. glaber (Narrowleaf trefoil) and L. subbiflorus cultivars. Lotus Newsl 34:12–26

    Google Scholar 

  • Grant WF, Small E (1995) The origin of the Lotus corniculatus (Fabaceae) complex: a synthesis of diverse evidence. Can J Bot 74:975–989

    Article  Google Scholar 

  • Green SL (2005) U.S. Germplasm Collection of Lotus: activities over the last decade. Lotus Newsl 35:106–108

    Google Scholar 

  • Handberg K, Stougaard J (1992) Lotus japonicus, an autogamous, diploid legume species for classical and molecular genetics. Plant J 2:487–496

    Article  Google Scholar 

  • Hayashi M, Miyahara A, Sato S, Kato T, Yoshikawa M, Taketa M, Hayashi M, Pedrosa A, Onda R, Imaizumi-Anraku H, Bachmair A, Sandal N, Stougaard J, Murooka Y, Tabata S, Kawasaki S, Kawaguchi M, Harada K (2001) Construction of a genetic linkage map of the model legume Lotus japonicus using an intraspecific F2 population. DNA Res 8:301–310

    Article  PubMed  CAS  Google Scholar 

  • Isobe S, Akashi R (2004) Legume base: a new resource center of Lotus japonicus and Glycine max. Lotus Newsl 34:27–30

    Google Scholar 

  • Izaguirre P, Beyhaut R (1998) Loteae. In: Las leguminosas en Uruguay y regiones vecinas. Editorial Agropecuaria Hemisferio Sur SRL, pp 314–327

    Google Scholar 

  • Kawaguchi M (2000) Lotus japonicus ‘Miyakojima’ MG-20: an early-flowering accession suitable for indoor handling. J Plant Res 113:507–509

    Article  Google Scholar 

  • Kawaguchi M, Motomura T, Imaizumi-Anraku H, Akao S, Kawasaki S (2001) Providing the basis for genomics in Lotus japonicus: the accessions Miyakojima and Gifu are appropriate crossing partners for genetic analyses. Mol Genet Genomics 266:157–166

    Article  PubMed  CAS  Google Scholar 

  • Kawaguchi M, Pedrosa-Harand A, Yano K, Hayashi M, Murooka Y, Saito K, Nagata T, Namai K, Nishida H, Shibata D, Sato S, Tabata S, Hayashi M, Harada K, Sandal N, Stougaard J, Bachmair A, Grant W (2005) Lotus burttii takes a position of the third corner in the Lotus molecular genetics triangle. DNA Res 12:69–77

    Article  PubMed  CAS  Google Scholar 

  • Kouchi H, Shimomura K, Hata S, Hirota A, Wu GJ, Kumagai H, Tajima S, Suganuma N, Suzuki A, Aoki T, Hayashi M, Yokoyama T, Ohyama T, Asamizu E, Kuwata C, Shibata D, Tabata S (2004) Large-scale analysis of gene expression profiles during early stages of root nodule formation in a model legume, Lotus japonicus. DNA Res 11:263–274

    Article  PubMed  CAS  Google Scholar 

  • Madsen LH, Fukai E, Radutoiu S, Yost CK, Sandal N, Schauser L, Stougaard J (2005) LORE1, an active low-copy-number TY3-gypsy retrotransposon family in the model legume Lotus japonicus. Plant J 44:372–381

    Article  PubMed  CAS  Google Scholar 

  • McCallum CM, Comai L, Greene EA, Henikoff S (2000) Targeting induced local lesions in genomes (TILLING) for plant functional genomics. Plant Physiol 123:439–442

    Article  PubMed  CAS  Google Scholar 

  • Papadopoulos Y, Kelman W (1999) Traditional breeding of Lotus species. In: Beuselinck P (ed) Trefoil: the science and technology of Lotus. American Society of Agronomy, Madison, WI, pp 187–198

    Google Scholar 

  • Perry JA, Wang TL, Welham TJ, Gardner S, Pike JM, Yoshida S, Parniske M (2003) A TILLING reverse genetics tool and a web-accessible collection of mutants of the legume Lotus japonicus. Plant Physiol 131:866–871

    Article  PubMed  CAS  Google Scholar 

  • Sandal N, Krusell L, Radutoiu S, Olbryt M, Pedrosa A, Stracke S, Sato S, Kato T, Tabata S, Parniske M, Bachmair A, Ketelsen T, Stougaard J (2002) A genetic linkage map of the model legume Lotus japonicus and strategies for fast mapping of new loci. Genetics 161:1673–1683

    PubMed  CAS  Google Scholar 

  • Sandal N, Petersen TR, Murray J, Umehara Y, Karas B, Yano K, Kumagai H, Yoshikawa M, Saito K, Hayashi M, Murakami Y, Wang X, Hakoyama T, Imaizumi-Anraku H, Sato S, Kato T, Chen W, Hossain S, Shibata S, Wang TL, Yokota K, Larsen K, Kanamori N, Madsen E, Radutoiu S, Madsen LH, Radu TG, Krusell L, Ooki Y, Banba M, Betti M, Rispail N, Skøt L, Tuck E, Perry J, Yoshida S, Vickers K, Pike J, Mulder L, Charpentier M, Müller J, Ohtomo R, Kojima T, Ando S, Marquez J, Gresshoff PM, Harada K, Webb J, Hata S, Suganuma N, Kouchi H, Kawasaki S, Tabata S, Hayashi M, Parniske M, Szczyglowski K, Kawaguchi M, Stougaard J (2006) Genetics of symbiosis in Lotus japonicus: recombinant inbred lines, comparative genetic maps, and map position of 35 symbiotic loci. Mol Plant Microbe Interact 19:80–91

    Article  PubMed  CAS  Google Scholar 

  • Sato S, Kaneko T, Nakamura Y, Asamizu E, Kato T, Tabata S (2001) Structural analysis of a Lotus japonicus genome. I. Sequence features and mapping of fifty-six TAC clones which cover the 5.4 Mbp regions of the genome. DNA Res 8:311–318

    Article  PubMed  CAS  Google Scholar 

  • Sato S, Nakamura Y, Kaneko T, Asamizu E, Kato T, Nakao M, Sasamoto S, Watanabe A, Ono A, Kawashima K, Fujishiro T, Katoh M, Kohara M, Kishida Y, Minami C, Nakayama S, Nakazaki N, Shimizu Y, Shinpo S, Takahashi C, Wada T, Yamada M, Ohmido N, Hayashi M, Fukui K, Baba T, Nakamichi T, Mori H, Tabata S (2008) Genome structure of the legume, Lotus japonicus. DNA Res 15:227–239

    Article  PubMed  CAS  Google Scholar 

  • Schauser L, Roussis A, Stiller J, Stougaard J (1999) A plant regulator controlling development of symbiotic root nodules. Nature 402:191–195

    Article  PubMed  CAS  Google Scholar 

  • Shimada N, Sasaki R, Sato S, Kaneko T, Tabata S, Aoki T, Ayabe S (2004) A comprehensive analysis of six dihydroflavonol 4-reductases encoded by a gene cluster of the Lotus japonicus genome. J Exp Bot 56:2573–2785

    Article  Google Scholar 

  • Shimada N, Sato S, Akashi T, Nakamura Y, Tabata S, Ayabe S, Aoki T (2007) Genome-wide analyses of the structural gene families involved in the legume-specific 5-deoxyisoflavonoid biosynthesis of Lotus japonicus. DNA Res 14:25–36

    Article  PubMed  CAS  Google Scholar 

  • Szczyglowski K, Hamburger D, Kapranov P, de Bruijn FJ (1997) Construction of a Lotus japonicus late nodulin expressed sequence tag library and identification of novel nodule-specific genes. Plant Physiol 114:1335–1346

    Article  PubMed  CAS  Google Scholar 

  • Thykjaer T, Stiller J, Handberg K, Jones J, Stougaard J (1995) The maize transposable element Ac is mobile in the legume Lotus japonicus. Plant Mol Biol 27:981–993

    Article  PubMed  CAS  Google Scholar 

  • Varshney RK, Hoisington DA, Tyagi AK (2006) Advances in cereal genomics and applications in crop breeding. Trends Biotechnol 24:490–499

    Article  PubMed  CAS  Google Scholar 

  • Vessabutr S, Grant WF (1995) Isolation, culture and regeneration of protoplast from birdsfoot trefoil (Lotus corniculatus). Plant Cell Tissue Organ Cult 49:9–15

    Article  Google Scholar 

  • Wagner C, Sefkow M, Kopka J (2003) Construction and application of a mass spectral and retention time index database generated from plant GC/EI-TOF-MS metabolite profiles. Phytochemistry 62:887–900

    Article  PubMed  CAS  Google Scholar 

  • Wienkoop S, Saalbach G (2003) Proteome analysis. Novel proteins identified at the peribacteroid membrane from Lotus japonicus root nodules. Plant Physiol 131:1080–1090

    Article  PubMed  CAS  Google Scholar 

  • Zhu H, Choi HK, Cook DR, Shoemaker RC (2005) Bridging model and crop legumes through comparative genomics. Plant Physiol 137:1189–1196

    Article  PubMed  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Shusei Sato .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2011 Springer-Verlag Berlin Heidelberg

About this chapter

Cite this chapter

Sato, S., Tabata, S. (2011). Lotus. In: Kole, C. (eds) Wild Crop Relatives: Genomic and Breeding Resources. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-14387-8_8

Download citation

Publish with us

Policies and ethics