Skip to main content

Annotating Atomic Components of Papers in Digital Libraries: The Semantic and Social Web Heading towards a Living Document Supporting eSciences

  • Conference paper

Part of the book series: Lecture Notes in Computer Science ((LNISA,volume 5690))

Abstract

Rather than a document that is being constantly re-written as in the wiki approach, the Living Document (LD) is one that acts as a document router, operating by means of structured and organized social tagging and existing ontologies. It offers an environment where users can manage papers and related information, share their knowledge with their peers and discover hidden associations among the shared knowledge. The LD builds upon both the Semantic Web, which values the integration of well-structured data, and the Social Web, which aims to facilitate interaction amongst people by means of user-generated content. In this vein, the LD is similar to a social networking system, with users as central nodes in the network, with the difference that interaction is focused on papers rather than people. Papers, with their ability to represent research interests, expertise, affiliations, and links to web based tools and databanks, represent a central axis for interaction amongst users. To begin to show the potential of this vision, we have implemented a novel web prototype that enables researchers to accomplish three activities central to the Semantic Web vision: organizing, sharing and discovering. Availability: http://www.scientifik.info/

This is a preview of subscription content, log in via an institution.

Buying options

Chapter
USD   29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD   84.99
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD   109.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Learn about institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  1. Wright, M., Sumner, T., Moore, R., Koch, T.: Connecting digital libraries to eScience: the future of scientific scholarship. International Journal of Digital Libraries, 1–4 (2007)

    Google Scholar 

  2. Wilkinson, M.: BioMOBY: an open-source biological web services proposal. Briefings In Bioinformatics 3, 331–341 (2002)

    Article  Google Scholar 

  3. Bindelli, S., Criscione, C., Curino, C.A., Drago, M.L., Eynard, D., Orsi, G.: Improving search and navigation by combining ontologies and social tags. In: Meersman, R., Tari, Z., Herrero, P. (eds.) OTM-WS 2008. LNCS, vol. 5333, pp. 76–85. Springer, Heidelberg (2008)

    Chapter  Google Scholar 

  4. Chen, M., Liu, X., Qin, J.: Semantic Relation Extraction from Socially-Generated Tags: A methodology for Metadata Generation. In: Proc. Int’l Conf. on Dublin Core and Metadata Applications (2008)

    Google Scholar 

  5. Hunter, J., Khan, I., Gerber, A.: HarvANA - Harvesting Community Tags to Enrich Collection Metadata. In: Pittsburgh, P., USA (ed.) ACM IEEE Joint Conference on Digital Libraries, JCDL 2008, Pittsburgh, PA (2004)

    Google Scholar 

  6. Berners-Lee, T., Hendler, J., Lassila, O.: The Semantic Web. Scientific American (2001)

    Google Scholar 

  7. Ashburner, M., Ball, C., Blake, J., Botstein, D., Butler, H., Cherry, J., Davis, A., Dolinski, K., Dwight, S., Eppig, J., Harris, M., Hill, D., Issel, T.L., Kasarskis, A., Lewis, S., Matese, J., Richardson, J., Ringwald, M., Rubin, G., Sherlock, G.: Gene Ontology: tool for the unification of biology. The Gene Ontology Consortium. Nature Genetics 25, 25–29 (2000)

    Article  Google Scholar 

  8. Mehrian-Shai, R., Chen, C.D., Shi, T., Horvath, S., Nelson, S.F., Reichardt, J.K.V., Sawyers, C.L.: Insulin growth factor-binding protein 2 is a candidate biomarker for PTEN status and PI3K/Akt pathway activation in glioblastoma and prostate cancer. PNAS 104, 5563–5568 (2007)

    Google Scholar 

  9. Gendarmi, D., Abbattista, F., Lanubile, F.: Fostering knowledge evolution through community-based participation. In: 16th International World Wide Web Conference, Banff, Alberta, Canada (2007)

    Google Scholar 

  10. Mons, B., Ashburner, M., Chichester, C., Van Milligen, E., Weeber, M., den Dunnen, J., Bairoch, A.: Calling on a million minds for community annotation in WikiProteins. Genome Biology (2008)

    Google Scholar 

  11. Backhaus, M., Kelso, J.: BIOWiki - a collaborative annotation and ontology curation framework. In: 16th International World Wide Web Conference, Banff, Alberta, Canada (2007)

    Google Scholar 

  12. De Roure, D., Goble, C., Aleksejevs, S., Bechhofer, S., Bhagat, J., Cruickshank, D., Michaelides, D., Newman, D.: The myExperiment Open Repository for Scientific Workflows. Open Repositories Atlanta, Georgia, US (2009)

    Google Scholar 

  13. Shotton, D., Portwin, K., Klyne, G., Miles, A.: Adventures in Semantic Publishing: Exemplar Semantic Enhancements of a Research Article. PLOS Computational Biology 5 (2009)

    Google Scholar 

  14. Passant, A.: The Meaning Of A Tag (2008), http://moat-project.org/

  15. Kim, L.-H., Breslin, J., Scerri, S., Deker, S., Kim, H., Yang, S.-K.: SCOT Ontology Specification (2008), http://scot-project.org/scot/

  16. Rebholz-Schuhmann, D., Arregui, M., Gaudan, M., Kirsch, H., Jimeno, A.: Text processing through Web Services: Calling Whatizit. Bioinformatics 24 (2007)

    Google Scholar 

  17. Labarga, A., Franck, V., Anderson, M., Lopez, R.: Web Services at the European Bioinformatics Institute. Nucleic Acid Research 35 (2007)

    Google Scholar 

  18. Kim, L.-H., Scerri, S., Breslin, J., Decker, S., Kim, H.: The state of the Art in Tag Ontologies: A Semantic Model for Tagguing and Folksonomies. In: International Conference on Dublin Core and Metadata Applications, Berlin, Germany (2008)

    Google Scholar 

  19. Gruber, T.: Ontology of Folksonomy: a Mash-up of apples and Oranges. International Journal of Semantic Web and Information Systems 3 (2005)

    Google Scholar 

  20. Zittrain, J.: The Future of the Internet and how to stop it. Yale Universoty Press, New Heaven (2008)

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2009 Springer-Verlag Berlin Heidelberg

About this paper

Cite this paper

García Castro, A. et al. (2009). Annotating Atomic Components of Papers in Digital Libraries: The Semantic and Social Web Heading towards a Living Document Supporting eSciences. In: Bhowmick, S.S., Küng, J., Wagner, R. (eds) Database and Expert Systems Applications. DEXA 2009. Lecture Notes in Computer Science, vol 5690. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-03573-9_24

Download citation

  • DOI: https://doi.org/10.1007/978-3-642-03573-9_24

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-642-03572-2

  • Online ISBN: 978-3-642-03573-9

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics