Skip to main content

Histopathology Image Classification Using Bag of Features and Kernel Functions

  • Conference paper
Artificial Intelligence in Medicine (AIME 2009)

Part of the book series: Lecture Notes in Computer Science ((LNAI,volume 5651))

Included in the following conference series:

Abstract

Image representation is an important issue for medical image analysis, classification and retrieval. Recently, the bag of features approach has been proposed to classify natural scenes, using an analogy in which visual features are to images as words are to text documents. This process involves feature detection and description, construction of a visual vocabulary and image representation building through visual-word occurrence analysis. This paper presents an evaluation of different representations obtained from the bag of features approach to classify histopathology images. The obtained image descriptors are processed using appropriate kernel functions for Support Vector Machines classifiers. This evaluation includes extensive experimentation of different strategies, and analyses the impact of each configuration in the classification result.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 39.99
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 54.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  1. Bosch, A., Muñoz, X., Martí, R.: Which is the best way to organize/classify images by content? Image and Vision Computing 25, 778–791 (2007)

    Article  Google Scholar 

  2. Csurka, G., Dance, C.R., Fan, L., Willamowski, J., Bray, C.: Visual categorization with bags of keypoints. In: Workshop on Statistical Learning in Computer Vision (2004)

    Google Scholar 

  3. Sivic, J., Zisserman, A.: Video Google: a text retrieval approach to object matching in videos 2, 1470–1477 (2003)

    Google Scholar 

  4. Tommasi, T., Orabona, F., Caputo, B.: CLEF2007 Image annotation task: An SVM-based cue integration approach. In: Working Notes of the 2007 CLEF Workshop, Budapest, Hungary (2007)

    Google Scholar 

  5. Iakovidis, D.K., Pelekis, N., Kotsifakos, E.E., Kopanakis, I., Karanikas, H., Theodoridis, Y.: A pattern similarity scheme for medical image retrieval. IEEE Transactions on Information Technology in Biomedicine (2008)

    Google Scholar 

  6. Long, L.R., Antani, S.K., Thoma, G.R.: Image informatics at a national research center. Computerized Medical Imaging and Graphics 29, 171–193 (2005)

    Article  PubMed  Google Scholar 

  7. Guld, M.O., Keysers, D., Deselaers, T., Leisten, M., Schubert, H., Ney, H., Lehmann, T.M.: Comparison of global features for categorization of medical images. Medical Imaging 5371, 211–222 (2004)

    Google Scholar 

  8. Deselaers, T., Keysers, D., Ney, H.: FIRE - Flexible Image Retrieval Engine: imageCLEF 2004 evaluation. In: Peters, C., Clough, P., Gonzalo, J., Jones, G.J.F., Kluck, M., Magnini, B. (eds.) CLEF 2004. LNCS, vol. 3491, pp. 688–698. Springer, Heidelberg (2005)

    Chapter  Google Scholar 

  9. Datar, M., Padfield, D., Cline, H.: Color and texture based segmentation of molecular pathology images using hsoms. In: 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2008. ISBI 2008, pp. 292–295 (2008)

    Google Scholar 

  10. Comaniciu, D., Meer, P., Foran, D.: Shape-based image indexing and retrieval for diagnostic pathology. In: Proceedings on Fourteenth International Conference on Pattern Recognition, vol. 1, pp. 902–904 (1998)

    Google Scholar 

  11. Caicedo, J.C., Gonzalez, F.A., Romero, E.: A semantic content-based retrieval method for histopathology images. In: Li, H., Liu, T., Ma, W.-Y., Sakai, T., Wong, K.-F., Zhou, G. (eds.) AIRS 2008. LNCS, vol. 4993, pp. 51–60. Springer, Heidelberg (2008)

    Chapter  Google Scholar 

  12. Zheng, L., Wetzel, A.W., Gilbertson, J., Becich, M.J.: Design and analysis of a content-based pathology image retrieval system. IEEE Transactions on Information Technology in Biomedicine 7(4), 249–255 (2003)

    Article  PubMed  Google Scholar 

  13. Lam, R.W.K., Ip, H.H.S., Cheung, K.K.T., Tang, L.H.Y., Hanka, R.: A multi-window approach to classify histological features. In: Proceedings on 15th International Conference on Pattern Recognition, vol. 2, pp. 259–262 (2000)

    Google Scholar 

  14. Tang, H.L., Hanka, R., Ip, H.H.S.: Histological image retrieval based on semantic content analysis. IEEE Transactions on Information Technology in Biomedicine 7(1), 26–36 (2003)

    Article  PubMed  Google Scholar 

  15. Fletcher, C.D.M.: Diagnostic Histopathology of tumors. Elsevier Science, Amsterdam (2003)

    Google Scholar 

  16. Nowak, E., Jurie, F., Triggs, B.: Sampling strategies for bag-of-features image classification, pp. 490–503 (2006)

    Google Scholar 

  17. Lowe, D.G.: Distinctive image features from scale-invariant keypoints. International Journal of Computer Vision 60(2), 91–110 (2004)

    Article  Google Scholar 

  18. Li, F.F., Perona, P.: A bayesian hierarchical model for learning natural scene categories. In: CVPR 2005: Proceedings of the 2005 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR 2005), Washington, DC, USA, vol. 2, pp. 524–531. IEEE Computer Society, Los Alamitos (2005)

    Google Scholar 

  19. Shawe-Taylor, J., Cristianini, N.: Kernel Methods for Pattern Analysis. Cambridge University Press, Cambridge (2004)

    Book  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2009 Springer-Verlag Berlin Heidelberg

About this paper

Cite this paper

Caicedo, J.C., Cruz, A., Gonzalez, F.A. (2009). Histopathology Image Classification Using Bag of Features and Kernel Functions. In: Combi, C., Shahar, Y., Abu-Hanna, A. (eds) Artificial Intelligence in Medicine. AIME 2009. Lecture Notes in Computer Science(), vol 5651. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-02976-9_17

Download citation

  • DOI: https://doi.org/10.1007/978-3-642-02976-9_17

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-642-02975-2

  • Online ISBN: 978-3-642-02976-9

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics