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Resonant Waveguide Grating Biosensor for Microarrays

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Optical Guided-wave Chemical and Biosensors II

Part of the book series: Springer Series on Chemical Sensors and Biosensors ((SSSENSORS,volume 8))

Abstract

A microarray consists of an indexed series of micron-sized spots of biological specimens for biomolecular interaction analysis. Microarray technologies present miniaturized and multiplexed approaches for sensitive and selective profiling of genes, proteins, and/or small molecules. Concurrent with the increasing applications of microarrays is the continuous efforts in developing novel detection systems for improving sensitivity and reliability in signal detection. This chapter describes the concept and applications of microarray technologies, and the principle of detection with an emphasis of resonant waveguide grating biosensor for microarray-based assays.

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Abbreviations

DMR:

Dynamic mass redistribution

DNA:

Deoxyribonucleic acid

GPCR:

G protein-coupled receptor

mRNA:

Messenger RNA

RNA:

Ribonucleic acid

RWG:

Resonant waveguide grating

SPR:

Surface plasmon resonance

References

  1. Bally M, Halter M, Vöros J, Grandin HM (2006) Optical microarray biosensing techniques. Surf Interface Anal 38:1442–1458

    Article  CAS  Google Scholar 

  2. Bertone P, Snyder M (2005) Advances in functional protein microarray technology. FEBS J 272:5400–5411

    Article  CAS  Google Scholar 

  3. Bochner BS, Alvarez RA, Mehta P, Bovin NV, Blixt O, White JR, Schnaar RL (2005) Glycan array screening reveals a candidate ligand for Siglect-8. J Biol Chem 280:4307–4312

    Article  CAS  Google Scholar 

  4. Budach W, Abel AP, Bruno AE, Neuschafer D (1999) Planar waveguides as high performance sensing platforms for fluorescence-based multiplexed oligonucleotide hybridization assays. Anal Chem 71:3347–3355

    Article  CAS  Google Scholar 

  5. Chen DS, Davis MM (2006) Molecular and functional analysis using live cell microarrays. Curr Opin Chem Biol 10:28–34

    Article  CAS  Google Scholar 

  6. Cooper MA (2006) Optical biosensors: where next and how soon. Drug Discov Today 11:1061–1067

    Article  CAS  Google Scholar 

  7. Delehanty JB (2004) Printing functional protein microarrays using piezoelectric capillaries. Methods Mol Biol 264:135–143

    CAS  Google Scholar 

  8. Drews J (2000) Drug discovery: a historical perspective. Science 287:1960–1963

    Article  CAS  Google Scholar 

  9. Duveneck GL, Pawlak M, Neuschafer D, Bar E, Budach W, Pieles U, Ehrat M (1997) Novel bioaffinity sensors for trace analysis based on luminescence excitation by planar waveguides. Sensors Actuators B Chem 38:88–95

    Article  Google Scholar 

  10. Duveneck GL, Bopp MA, Ehrat M, Balet LP, Haiml M, Keller U, Marowsky G, Soria S (2003) Two-photon fluorescence excitation of macroscopic areas on planar waveguides. Biosens Bioelectron 18:503–510

    Article  CAS  Google Scholar 

  11. Fang Y (2006) Label-free cell-based assays with optical biosensors in drug discovery. Assay Drug Dev Technol 4:583–595

    Article  CAS  Google Scholar 

  12. Fang Y (2007) Non-invasive optical biosensor for probing cell signaling. Sensors 7:2316–2329

    Article  CAS  Google Scholar 

  13. Fang Y, Ferrie AM (2007) Optical biosensor differentiates signaling of endogenous PAR1 and PAR2 in A431 cells. BMC Cell Biol 8:e24

    Article  Google Scholar 

  14. Fang Y, Ferrie AM (2008) Label-free optical biosensor for ligand-directed functional selectivity acting on β2 adrenoceptor in living cells. FEBS Lett 582:558–564

    Article  CAS  Google Scholar 

  15. Fang Y, Frutos AG, Lahiri J (2002) Membrane protein microarrays. J Am Chem Soc 124:2394–2395

    Article  CAS  Google Scholar 

  16. Fang Y, Frutos AG, Lahiri J (2003) Ganglioside microarrays for toxin detection. Langmuir 19:1500–1505

    Article  CAS  Google Scholar 

  17. Fang Y, Lahiri J, Picard L (2003) G protein-coupled receptor microarrays for drug discovery. Drug Discov Today 8:755–761

    Article  CAS  Google Scholar 

  18. Fang Y, Ferrie AM, Fontaine NH, Yuen PK (2005) Characteristics of dynamic mass redistribution of EGF receptor signaling in living cells measured with label free optical biosensors. Anal Chem 77:5720–5725

    Article  CAS  Google Scholar 

  19. Fang Y, Li G, Peng J (2005) Optical biosensor provides insights for bradykinin B2 receptor signaling in A431 cells. FEBS Lett 579:6365–6374

    Article  CAS  Google Scholar 

  20. Fang Y, Ferrie AM, Fontaine NH, Mauro J, Balakrishnan J (2006) Resonant waveguide grating biosensor for living cell sensing. Biophys J 91:1925–1940

    Article  CAS  Google Scholar 

  21. Fang Y, Peng J, Ferrie AM, Burkhalter RS (2006) Air-stable G protein-coupled receptor microarrays and ligand binding characteristics. Anal Chem 78:149–155

    Article  CAS  Google Scholar 

  22. Fang Y, Li G, Ferrie AM (2007) Non-invasive optical biosensor for assaying endogenous G protein-coupled receptors in adherent cells. J Pharmacol Toxicol Methods 55:314–322

    Article  CAS  Google Scholar 

  23. Francois P, Charbonnier Y, Jacquet J, Utinger D, Bento M, Lew D, Kresbach GM, Ehrat M, Schlegel W, Schrenzel J (2006) Rapid bacterial identification using evanescent-waveguide oligonucleotide microarray classification. J Microbiol Methods 65:390–403

    Article  CAS  Google Scholar 

  24. Fukui S, Feizi T, Galustian C, Lawson AM, Chai W (2002) Oligosaccharide microarrays for high-throughput detection and specificity assignments of carbohydrate-protein interactions. Nat Biotechnol 20:1011–1017

    Article  CAS  Google Scholar 

  25. Grandin HM, Stadler B, Textor M, Voros J (2006) Waveguide excitation fluorescence microscopy: a new tool for sensing and imaging the biointerface. Biosens Bioelectron 21:1476–1482

    Article  CAS  Google Scholar 

  26. Hall DA, Zhu H, Zhu X, Royce T, Gerstein M, Snyder M (2004) Regulation of gene expression by a metabolic enzyme. Science 306:482–484

    Article  CAS  Google Scholar 

  27. He M, Wang MW (2007) Arraying proteins by cell-free synthesis. Biomol Eng 24:375–380

    Article  CAS  Google Scholar 

  28. Hook AL, Thissen H, Voelcker NH (2006) Surface manipulation of biomolecules for cell microarray applications. Trends Biotechnol 24:471–477

    Article  CAS  Google Scholar 

  29. Hopkins AL, Groom CR (2002) The druggable genome. Nat Rev Drug Discov 1:727–730

    Article  CAS  Google Scholar 

  30. Huang J, Zhu H, Haggarty SJ, Spring DR, Hwang H, Jin F, Snyder M, Schreiber SL (2004) Finding new components of the target of rapamycin (TOR) signaling network through chemical genetics and proteome chips. Proc Natl Acad Sci USA 101:16594–16599

    Article  CAS  Google Scholar 

  31. Ivanov SS, Chung AS, Yuan ZL, Guan YJ, Sachs KV, Reichner JS, Chin YE (2004) Antibodies immobilized as arrays to profile protein post-translational modifications in mammalian cells. Mol Cell Proteomics 3:788–795

    Article  CAS  Google Scholar 

  32. Jones RB, Gordus A, Krall JA, MacBeath G (2006) A quantitative protein interaction network for the ErbB receptors using protein microarrays. Nature 439:168–174

    Article  CAS  Google Scholar 

  33. Li PY, Lin B, Gerstenmaier J, Cunningham B (2004) A new method for label-free imaging of biomolecular interactions. Sensors Actuators B Chem 99:6–13

    Article  Google Scholar 

  34. Li G, Ferrie AM, Fang Y (2006) Label-free profiling of endogenous G protein-coupled receptors using a cell-based high throughput screening technology. J Assoc Lab Autom 11:181–187

    Article  CAS  Google Scholar 

  35. Liang PH, Wu CY, Greenberg WA, Wong CH (2008) Glycan arrays: biological and medical applications. Curr Opin Chem Biol 12:1–7

    Article  Google Scholar 

  36. Lin B, Gerstenmeier J, Li P, Pien H, Pepper J, Cunningham BA (2002) Label-free optical technique for detecting small molecule interactions. Biosens Bioelectron 17:827–834

    Article  CAS  Google Scholar 

  37. MacBeath G, Schreiber SL (2000) Printing proteins as microarrays for high throughput function determination. Science 289:1760–1763

    CAS  Google Scholar 

  38. Miller JC, Zhou H, Kwekel J, Cavallo R, Burke J, Butler EB, Teh BS, Haab BB (2003) Antibody microarray profiling of human prostate cancer sera: antibody screening and identification of potential biomarkers. Proteomics 3:56–63

    Article  CAS  Google Scholar 

  39. Mishina YM, Wilson CJ, Bruett L, Smith JJ, Stoop-Myer C, Jong S, Amaral LP, Pedersen R, Lyman SK, Myer VE, Kreider BL, Thompson CM (2004) Multiplex GPCR assay in reverse transfection cell microarrays. J Biomol Screen 9:196–207

    Article  CAS  Google Scholar 

  40. Nielsen UB, Cardone MH, Sinskey AJ, MacBeath G, Sorger PK (2003) Profiling receptor tyrosine kinase activation by using Ab microarrays. Proc Natl Acad Sci USA 100:9330–9335

    Article  Google Scholar 

  41. Pawlak M, Schick E, Bopp MA, Schneider MJ, Oroszlan P, Ehrat M (2002) Zeptosens’ protein microarrays: a novel high performance microarray platform for low abundance protein analysis. Proteomics 2:383–393

    Article  CAS  Google Scholar 

  42. Pease AC, Solas D, Sullivan EJ, Cronin MT, Holmes CP, Fodor SP (1994) Light-generated oligonucleotide arrays for rapid DNA sequence analysis. Proc Natl Acad Sci USA 91:5022–5026

    Article  CAS  Google Scholar 

  43. Pilobello KT, Mahal L (2007) Deciphering the glycocode: the complexity and analytical challenge of glycomics. Curr Opin Chem Biol 11:300–305

    Article  CAS  Google Scholar 

  44. Pollack JR, Perou CM, Alizadeh AA, Eisen MB, Pergamenschikov A, Williams CF, Jeffrey SS, Botstein D, Brown PO (1999) Genome-wide analysis of DNA copy-number changes using cDNA microarrays. Nat Genet 23:41–46

    Article  CAS  Google Scholar 

  45. Ramachandran N, Larson DN, Stark PRH, Hainsworth E, LaBear J (2005) Emerging tools for real-time label-free detection of interactions on functional protein microarrays. FASEB J 272:5412–5425

    CAS  Google Scholar 

  46. Rich RL, Myszka DG (2007) Higher-throughput, label-free, real-time molecular interaction analysis. Anal Biochem 361:1–6

    Article  CAS  Google Scholar 

  47. Rothenhausler B, Knoll W (1988) Surface–plasmon microscopy. Nature 332:615–617

    Article  Google Scholar 

  48. Sassolas A, Leca-Bouvier BD, Blum J (2008) DNA biosensors and microarrays. Chem Rev 108:109–139

    Article  CAS  Google Scholar 

  49. Schena M, Shalon D, Davis RW, Brown PO (1995) Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science 270:467–470

    Article  CAS  Google Scholar 

  50. Shalon D, Smith SJ, Brown PO (1996) A DNA microarray system for analyzing complex DNA samples using two-color fluorescent probe hybridization. Genome Res 6:639–645

    Article  CAS  Google Scholar 

  51. Sreekumar A, Nyati MK, Varambally S, Barrette TR, Ghosh D, Lawrence TS, Chinnaiyan AM (2001) Profiling of cancer cells using protein microarrays: discovery of novel radiation-regulated proteins. Cancer Res 61:7585–7593

    CAS  Google Scholar 

  52. Tiefenthaler K, Lukosz W (1989) Sensitivity of grating couplers as integrated-optical chemical sensors. J Opt Soc Am B 6:209–220

    Article  CAS  Google Scholar 

  53. Usui-Aoki K, Shimada K, Nagano M, Kawai M, Koga H (2005) A novel approach to protein expression proWling using antibody microarrays combined with surface plasmon resonance technology. Proteomics 5:2396–2401

    Article  CAS  Google Scholar 

  54. Wheeler DB, Carpenter AE, Sabatini DM (2005) Cell microarrays and RNA interference chip away at gene function. Nat Genet 37:S25–S30

    Article  CAS  Google Scholar 

  55. Wilson R, Cossins AR, Spiller DG (2006) Encoded microcarriers for high-throughput multiplexed detection. Angew Chem Int Ed 45:6104–6117

    Article  CAS  Google Scholar 

  56. Yeatman EM (1996) Resolution and sensitivity in surface plasmon microscopy and sensing. Biosens Bioelectron 11:635–649

    Article  CAS  Google Scholar 

  57. Yuk JS, Jung SH, Jung JW, Hong DG, Han JA, Kim YM, Ha KS (2004) Analysis of protein interactions on protein arrays by a wavelength interrogation-based surface plasmon resonance biosensor. Proteomics 4:3468–3476

    Article  CAS  Google Scholar 

  58. Zhu H, Klemic JF, Chang S, Bertone P, Casamayor A, Klemic KG, Smith D, Gerstein M, Reed MA, Snyder M (2000) Analysis of yeast protein kinases using protein chips. Nat Genet 26:283–289

    Article  CAS  Google Scholar 

  59. Zhu H, Bilgin M, Bangham R, Hall D, Casamayor A, Bertone P, Lan N, Jansen R, Bidlingmaier S, Houfek T, Mitchell T, Miller P, Dean RA, Gerstein M, Snyder M (2001) Global analysis of protein activities using proteome chips. Science 293:2101–2105

    Article  CAS  Google Scholar 

  60. Ziauddin J, Sabatini DM (2001) Microarrays of cells expressing defined cDNA. Nature 411:107–110

    Article  CAS  Google Scholar 

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Correspondence to Ye Fang .

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Fang, Y. (2010). Resonant Waveguide Grating Biosensor for Microarrays. In: Zourob, M., Lakhtakia, A. (eds) Optical Guided-wave Chemical and Biosensors II. Springer Series on Chemical Sensors and Biosensors, vol 8. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-02827-4_2

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