Querying Protein-Protein Interaction Networks

  • Guillaume Blin
  • Florian Sikora
  • Stéphane Vialette
Part of the Lecture Notes in Computer Science book series (LNCS, volume 5542)

Abstract

Recent techniques increase the amount of our knowledge of interactions between proteins. To filter, interpret and organize this data, many authors have provided tools for querying patterns in the shape of paths or trees in Protein-Protein Interaction networks. In this paper, we propose an exact algorithm for querying graphs pattern based on dynamic programming and color-coding. We provide an implementation which has been validated on real data.

Keywords

Dynamic Programming Exact Algorithm Tree Decomposition Graph Query Tree Query 
These keywords were added by machine and not by the authors. This process is experimental and the keywords may be updated as the learning algorithm improves.

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Copyright information

© Springer-Verlag Berlin Heidelberg 2009

Authors and Affiliations

  • Guillaume Blin
    • 1
  • Florian Sikora
    • 1
  • Stéphane Vialette
    • 1
  1. 1.Université Paris-Est, LIGM - UMR CNRS 8049France

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