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Bounded Hairpin Completion

  • Masami Ito
  • Peter Leupold
  • Victor Mitrana
Part of the Lecture Notes in Computer Science book series (LNCS, volume 5457)

Abstract

We consider a restricted variant of the hairpin completion called bounded hairpin completion. The hairpin completion is a formal operation inspired from biochemistry. Applied to a word encoding a single stranded molecule x such that either a suffix or a prefix of x is complementary to a subword of x, hairpin completion produces a new word z, which is a prolongation of x to the right or to the left by annealing.

The restriction considered here concerns the length of all prefixes and suffixes that are added to the current word by hairpin completion. They cannot be longer than a given constant. Closure properties of some classes of formal languages under the non-iterated and iterated bounded hairpin completion are investigated. We also define the inverse operation, namely bounded hairpin reduction, and consider the set of all primitive bounded hairpin roots of a regular language.

Keywords

Formal Language Regular Language Closure Property Inverse Operation Circular Permutation 
These keywords were added by machine and not by the authors. This process is experimental and the keywords may be updated as the learning algorithm improves.

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Copyright information

© Springer-Verlag Berlin Heidelberg 2009

Authors and Affiliations

  • Masami Ito
    • 1
  • Peter Leupold
    • 1
  • Victor Mitrana
    • 2
    • 3
  1. 1.Department of Mathematics, Faculty of ScienceKyoto Sangyo UniversityKyotoJapan
  2. 2.Faculty of Mathematics and Computer ScienceUniversity of BucharestBucharestRomania
  3. 3.Department of Information Systems and ComputationTechnical University of ValenciaValenciaSpain

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