Skip to main content

A Tighter Analysis of Set Cover Greedy Algorithm for Test Set

  • Conference paper
Book cover Combinatorics, Algorithms, Probabilistic and Experimental Methodologies (ESCAPE 2007)

Part of the book series: Lecture Notes in Computer Science ((LNTCS,volume 4614))

Abstract

Set cover greedy algorithm is a natural approximation algorithm for test set problem. This paper gives a precise and tighter analysis of approximation ratio of this algorithm. The author improves the approximation ratio 2ln n directly derived from set cover to 1.14ln n by applying potential function technique of derandomization method. In addition, the author gives a nontrivial lower bound (1 + α)ln n of approximation ratio, where α is a positive constant. This lower bound, together with the matching bound of information content heuristic, confirms the fact information content heuristic is slightly better than set cover greedy algorithm in worst case.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 39.99
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 54.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  1. Moret, B.M.E., Shipiro, H.D.: On minimizing a set of tests. SIAM Journal on Scientific and Statistical Computing 6, 983–1003 (1985)

    Article  Google Scholar 

  2. De Bontridder, K.M.J., Halldórsson, B.V., Halldórsson, M.M., Hurkens, C.A.J., Lenstra, J.K., Ravi, R., Stougie, L.: Approximation algorithm for the test cover problems. Mathematical Programming-B 98, 477–491 (2003)

    Article  MATH  Google Scholar 

  3. Berman, P., DasGupta, B., Kao, M.: Tight approximability results for test set problems in bioinformatics. Journal of Computer and System Sciences 71, 145–162 (2005)

    Article  MATH  MathSciNet  Google Scholar 

  4. DasGupta, B., Konwar, K., Mandoiu, I., Shvartsman, A.: Highly scalable algorithms for robust string barcoding. International Journal of Bioinformatics Research and Applications 1, 145–161 (2005)

    Article  Google Scholar 

  5. Young, N.E.: Randomized rounding without solving the linear program. In: SODA 1995. Sixth ACM-SIAM Symposium on Discrete Algorithms, pp. 170–178. ACM Press, New York (1995)

    Google Scholar 

  6. Slavík, P.: A tight analysis of the greedy algorithm for set cover. Journal of Algorithms 25, 237–254 (1997)

    Article  MATH  MathSciNet  Google Scholar 

  7. Cui, P., Liu, H.: Deep Approximation of Set Cover Greedy Algorithm for Test Set (in Chinese). Journal of Software 17, 1494–1500 (2006)

    Article  MATH  MathSciNet  Google Scholar 

  8. Borneman, J., Chrobak, M., Vedova, G.D., Figueora, A., Jiang, T.: Probe selection algorithms with applications in the analysis of microbial communities. Bioinformatics 17(Suppl. 1), S39–S48 (2001)

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Bo Chen Mike Paterson Guochuan Zhang

Rights and permissions

Reprints and permissions

Copyright information

© 2007 Springer-Verlag Berlin Heidelberg

About this paper

Cite this paper

Cui, P. (2007). A Tighter Analysis of Set Cover Greedy Algorithm for Test Set. In: Chen, B., Paterson, M., Zhang, G. (eds) Combinatorics, Algorithms, Probabilistic and Experimental Methodologies. ESCAPE 2007. Lecture Notes in Computer Science, vol 4614. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-540-74450-4_3

Download citation

  • DOI: https://doi.org/10.1007/978-3-540-74450-4_3

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-540-74449-8

  • Online ISBN: 978-3-540-74450-4

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics