Skip to main content

Formalizing ‘Living Guidelines’ Using LASSIE: A Multi-step Information Extraction Method

  • Conference paper
Artificial Intelligence in Medicine (AIME 2007)

Part of the book series: Lecture Notes in Computer Science ((LNAI,volume 4594))

Included in the following conference series:

Abstract

Living guidelines are documents presenting up-to-date and state-of-the-art knowledge to practitioners. To have guidelines implemented by computer-support they firstly have to be formalized in a computer-interpretable form. Due to the complexity of such formats the formalization process is challenging, but burdensome and time-consuming.

The LASSIE methodology supports this task by formalizing guidelines in several steps from the textual form to the guideline representation language Asbru using a document-centric approach. LASSIE uses Information Extraction technique to semi-automatically accomplish these steps.

We apply LASSIE to support the implementation of living guidelines. Based on a living guideline published by the Scottish Intercollegiate Guidelines Network (SIGN) we show that adaptations of previously formalized guidelines can be accomplished easily and fast. By using this new approach only new and changed text parts have to be modeled. Furthermore, models can be inherited from previously modeled guideline versions that were added by domain experts.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 39.99
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 54.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

Similar content being viewed by others

References

  1. Kaiser, K., Akkaya, C., Miksch, S.: How can information extraction ease formalizing treatment processes in clinical practice guidelines? A method and its evaluation. Artificial Intelligence in Medicine 39(2), 151–163 (2007)

    Article  Google Scholar 

  2. Kaiser, K., Miksch, S.: Modeling treatment processes using information extraction. In: Yoshida, H., Jain, A., Ichalkaranje, A., Jain, L.C., Ichalkaranje, N. (eds.) Advanced Computational Intelligence Paradigms in Healthcare – 1. Studies in Computational Intelligence (SCI), vol. 48, pp. 189–224. Springer, Heidelberg (2007)

    Chapter  Google Scholar 

  3. Scottish Intercollegiate Guidelines Network (SIGN), British Thoracic Society: British guideline on the management of asthma. a clinical national guideline. Scottish Intercollegiate Guidelines Network (SIGN) (2005)

    Google Scholar 

  4. Peleg, M., Tu, S.W., Bury, J., Ciccarese, P., Fox, J., Greenes, R.A., Hall, R., Johnson, P.D., Jones, N., Kumar, A., Miksch, S., Quaglini, S., Seyfang, A., Shortliffe, E.H., Stefanelli, M.: Comparing computer-interpretable guideline models: A case-study approach. Journal of the American Medical Informatics Association (JAMIA) 10(1), 52–68 (2003)

    Article  Google Scholar 

  5. Polvani, K.A., Agrawal, A., Karras, B., Deshpande, A., Shiffman, R.: GEM Cutter Manual. Yale Center for Medical Informatics, New Haven, CT (2000)

    Google Scholar 

  6. Shiffman, R.N., Karras, B.T., Agrawal, A., Chen, R., Marenco, L., Nath, S.: GEM: a proposal for a more comprehensive guideline document model using XML. Journal of the American Medical Informatics Association (JAMIA) 7(5), 488–498 (2000)

    Google Scholar 

  7. Ružička, M., Svátek, V.: Mark-up based analysis of narrative guidelines with the Stepper tool. In: Kaiser, K., Miksch, S., Tu, S.W. (eds.) Computer-based Support for Clinical Guidelines and Protocols. Proceedings of the Symposium on Computerized Guidelines and Protocols (CGP 2004), Amsterdam, NL, vol. 101, pp. 132–136. IOS Press, Amsterdam (2004)

    Google Scholar 

  8. Votruba, P., Miksch, S., Kosara, R.: Facilitating knowledge maintenance of clinical guidelines and protocols. In: Fieschi, M., Coiera, E., Li, Y.C.J. (eds.) Proceedings from the Medinfo 2004 World Congress on Medical Informatics, AMIA, pp. 57–61. IOS Press, Amsterdam (2004)

    Google Scholar 

  9. Shahar, Y., Young, O., Shalom, E., Mayaffit, A., Moskovitch, R., Hessing, A., Galperin, M.: DEGEL: A hybrid, multiple-ontology framework for specification and retrieval of clinical guidelines. In: Dojat, M., Keravnou, E.T., Barahona, P. (eds.) AIME 2003. LNCS (LNAI), vol. 2780, pp. 122–131. Springer, Heidelberg (2003)

    Google Scholar 

  10. Kosara, R., Miksch, S.: Metaphors of Movement: A Visualization and User Interface for Time-Oriented, Skeletal Plans.. Artificial Intelligence in Medicine, Special Issue: Information Visualization in Medicine 22(2), 111–131 (2001)

    Google Scholar 

  11. Steele, R., Fox, J.: Tallis PROforma Primer – Introduction to PROforma Language and Software with Worked Examples. Technical report, Advanced Computation Laboratory, Cancer Research, London, UK (2002)

    Google Scholar 

  12. Gennari, J.H., Musen, M.A., Fergerson, R.W., Grosso, W.E., Crubézy, M., Eriksson, H., Noy, N.F., Tu, S.W.: The Evolution of Protégé: An Environment for Knowledge-based Systems Development. International Journal of Human Computer Studies 58(1), 89–123 (2003)

    Article  Google Scholar 

  13. Peleg, M., Kantor, R.: Approaches for guideline versioning using GLIF. In: Musen, M.A. (ed.) Proceedings of the 2003 American Medical Informatics Association (AMIA) Annual Symposium, Washington, DC, pp. 509–513. American Medical Informatics Association (2003)

    Google Scholar 

  14. Seyfang, A., Martinez-Salvador, B., Serban, R., Wittenberg, J., Miksch, S., Marcos, M., ten Teije, A., Rosenbrand, K.: Maintaining formal models of living guidelines efficiently. In: Bellazzi, R., Abu-Hanna, A., Hunter, J. (eds.) Proc. of the 11th Conference on Artificial Intelligence in Medicine (AIME 2007), Springer, Heidelberg (2007)

    Google Scholar 

  15. National Library of Medicine: Medical Subject Headings. The Library (updated annually)

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Riccardo Bellazzi Ameen Abu-Hanna Jim Hunter

Rights and permissions

Reprints and permissions

Copyright information

© 2007 Springer-Verlag Berlin Heidelberg

About this paper

Cite this paper

Kaiser, K., Miksch, S. (2007). Formalizing ‘Living Guidelines’ Using LASSIE: A Multi-step Information Extraction Method. In: Bellazzi, R., Abu-Hanna, A., Hunter, J. (eds) Artificial Intelligence in Medicine. AIME 2007. Lecture Notes in Computer Science(), vol 4594. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-540-73599-1_54

Download citation

  • DOI: https://doi.org/10.1007/978-3-540-73599-1_54

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-540-73598-4

  • Online ISBN: 978-3-540-73599-1

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics