Skip to main content

Membrane Computing as a Framework for Bio-modeling (An Informal Glimpse)

  • Conference paper
Algebraic Biology (AB 2007)

Part of the book series: Lecture Notes in Computer Science ((LNTCS,volume 4545))

Included in the following conference series:

  • 616 Accesses

Abstract

Membrane computing is a well developed branch of natural computing, having as its goal to abstract computing models from the structure and the functioning of the living cell. A recent vivid direction of investigation in this area is devising models for and carrying out applications in biology/medicine and in other disciplines. We briefly present here the basic ideas of membrane computing, its interest for modeling in biology, as well as some applications.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 39.99
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 54.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  1. Bianco, L., Pescini, D., Siepmann, P., Krasnogor, N., Romero-Campero, F.J., Gheorghe, M.: Towards a P systems Pseudomonas quorum sensing model. In: [5], pp. 197–214

    Google Scholar 

  2. Cheruku, S., Păun, A., Romero-Campero, F.J., Pérez-Jiménez, M.J., Ibarra, O.H.: Simulating FAS-induced apoptosis by using P systems. In: Pre-proceedings of Conf. Bio-Inspired Computing – Theory and Applications, BIC-TA 2006, Wuhan, China. Volume of Membrane Computing Section, pp. 71–81 (2006)

    Google Scholar 

  3. Ciobanu, G., Păun, Gh., Pérez-Jiménez, M.J.: Applications of Membrane Computing. Springer, Berlin (2005)

    Google Scholar 

  4. Goldbeter, A.: A minimal cascade model for the mitotic oscillator involving cyclin and cdc2 kinase. PNAS 88(20), 9107–9111 (1991)

    Article  Google Scholar 

  5. Hoogeboom, H.J., Păun, G., Rozenberg, G., Salomaa, A.: Membrane Computing. In: Hoogeboom, H.J., Păun, G., Rozenberg, G., Salomaa, A. (eds.) WMC 2006. LNCS, vol. 4361, Springer, Berlin (2006)

    Google Scholar 

  6. Ionescu, M., Păun, G., Yokomori, T.: Spiking neural P systems. Fundamenta Informaticae 71(2-3), 279–308 (2006)

    MATH  MathSciNet  Google Scholar 

  7. Manca, V.: Metabolic P systems for biochemical dynamics. In: Pre-proceedings of Conf. Bio-Inspired Computing - Theory and Applications, BIC-TA 2006, Wuhan, China. Volume of Membrane Computing Section, pp. 15–26 (2006)

    Google Scholar 

  8. Mesarović, M.D.: System theory and biology – view of a theoretician. In: Mesarović, M.D. (ed.) System Theory and Biology, pp. 59–87. Springer, New York (1968)

    Google Scholar 

  9. Martegani, E., Tisi, R., Belotti, F., Colombo, S., Paiardi, C., Winderickx, J., Cazzaniga, P., Besozzi, D., Mauri, G.: Identification of an intracellular signalling complex for ras/camp pathway in yeast: experimental evidences and modelling. ISSY 25 Conf. Hanassari, Espo, Finland (2006)

    Google Scholar 

  10. Păun, Gh.: Computing with membranes. Journal of Computer and System Sciences, 61(1), pp. 108–143 (2000), (and Turku Center for Computer Science-TUCS Report 208 (November 1998), www.tucs.fi )

  11. Păun, Gh.: Computing with Membranes. An Introduction. Springer, Berlin (2002)

    Google Scholar 

  12. Păun, G., Păun, R.: Membrane computing as a framework for modeling economic processes. In: Proc. SYNASC 2005, Timişoara, Romania, pp. 11–18. IEEE Press, NJ (2005)

    Google Scholar 

  13. Pérez-Jiménez, M.J., Romero-Campero, F.J.: A study of the robustness of the EGFR signalling cascade using continuous membrane systems. In: Mira, J.M., Álvarez, J.R. (eds.) IWINAC 2005. LNCS, vol. 3561, pp. 268–278. Springer, Berlin (2005)

    Google Scholar 

  14. Wolkenhauer, O.: Systems biology: The reincarnation of systems theory applied in biology? Briefings in Bioinformatics 2(3), 258–270 (2001)

    Article  Google Scholar 

  15. The Web Page of Membrane Computing: http://psystems.disco.unimib.it

  16. The Sheffield P Systems Applications Web Page: http://www.dcs.shef.ac.uk/~marian/PSimulatorWeb/P_Systems_applications.htm

  17. The Web Page of Verona Research Group on Natural Computing: http://www.di.univr.it

Download references

Author information

Authors and Affiliations

Authors

Editor information

Hirokazu Anai Katsuhisa Horimoto Temur Kutsia

Rights and permissions

Reprints and permissions

Copyright information

© 2007 Springer-Verlag Berlin Heidelberg

About this paper

Cite this paper

Păun, G. (2007). Membrane Computing as a Framework for Bio-modeling (An Informal Glimpse). In: Anai, H., Horimoto, K., Kutsia, T. (eds) Algebraic Biology. AB 2007. Lecture Notes in Computer Science, vol 4545. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-540-73433-8_3

Download citation

  • DOI: https://doi.org/10.1007/978-3-540-73433-8_3

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-540-73432-1

  • Online ISBN: 978-3-540-73433-8

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics