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Part of the book series: Biotechnology in Agriculture and Forestry ((AGRICULTURE,volume 59))

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References

  • An S, Park S, Jeong DH, Lee DY, Kang HG, Yu JH, Hur J, Kim SR, Kim YH, Lee M, Han S, Kim SJ, Yang J, Kim E, Wi SJ, Chung HS, Hong JP, Choe V, Lee HK, Choi JH, Nam J, Park PB, Park KY, Kim WT, Choe S, Lee CB, An G (2003) Generation and analysis of end sequence database for T-DNA tagging lines in rice. Plant Physiol 133:2040–2047

    PubMed  CAS  Google Scholar 

  • Ashikari M, Wu J, Yano M, Sasaki T, Yoshimura A (1999) Rice gibberellin-insensitive dwarf mutant gene Dwarf 1 encodes the α-subunit of GTP-binding protein. Proc Natl Acad Sci USA 96:10284–10289

    PubMed  CAS  Google Scholar 

  • Ashikari M, Sakakibara H, Lin S, Yamamoto T, Takashi T, Nishimura A, Angeles ER, Qian Q, Kitano H, Matsuoka M (2005) Cytokinin oxidase regulates rice grain production. Science 309:741–745

    PubMed  CAS  Google Scholar 

  • Bertin I, Zhu JH, Gale MD (2005) SSCP-SNP in pearl millet — a new marker system for comparative genetics. Theor Appl Genet 110:1467–1472

    PubMed  CAS  Google Scholar 

  • Beyer P, Al-Babili S, Ye X, Lucca P, Schaub P, Welsch R, Potrykus I (2002) Golden Rice: introducing the beta-carotene biosynthesis pathway into rice endosperm by genetic engineering to defeat vitamin A deficiency. J Nutr 132:506S–510S

    PubMed  Google Scholar 

  • Bohnert HU, Fudal I, Dioh W, Tharreau D, Notteghem JL, Lebrun MH (2004) A putative polyketide synthase/peptide synthetase from Magnaporthe grisea signals pathogen attack to resistant rice. Plant Cell 16:2499–2513

    PubMed  Google Scholar 

  • Budar F, Thai-Toong S, Van Montagu M, Hernalsteens J (1986) Agrobacterium-mediated gene transfer results mainly in transgenic plants transmitting T-DNA as single Mendelian factor. Genetics 114:303–313

    PubMed  CAS  Google Scholar 

  • Chen S, Jin W, Wang M, Zhang F, Zhou J, Jia Q, Wu Y, Liu F, Wu P (2003) Distribution and characterization of over 1,000 T-DNA tags in rice genome. Plant J 36:105–113

    PubMed  CAS  Google Scholar 

  • Cheng Z, Targolli J, Su J, He CK, Li F, Wu R (2001) Transgenic approaches for generating rice tolerant of dehydration stress. In: Khush GS, Brar DS, Hardy B (eds) Rice genetics. Science Press, New Delhi, pp 433–438

    Google Scholar 

  • Cheng Z, Targolli J, Huang X, Wu R (2002) Wheat LIA genes, PMN80 and PMA 1959, enhance dehydration tolerance of transgenic rice (Oryza sativa L.). Mol Breed 10:71–82

    CAS  Google Scholar 

  • Chong M (2003) Acceptance of golden rice in the Philippine ‘rice bowl’. Nat Biotechnol 21:971–972

    PubMed  CAS  Google Scholar 

  • Christou P (1997) Rice transformation: bombardment. Plant Mol Biol 35:197–203

    PubMed  CAS  Google Scholar 

  • Chu Z, Yuan M, Yao J, Ge X, Yuan B, Xu C, Li X, Fu B, Li Z, Bennetzen JL, Zhang Q, Wang S (2006) Promoter mutations of an essential gene for pollen development result in disease resistance in rice. Genes Dev 20:1250–1255

    PubMed  CAS  Google Scholar 

  • Comstock RE, Robinson HF (1952) Estimation of average dominance of genes. Iowa State College, Ames

    Google Scholar 

  • Courtois B, Lafitte R, Robin S, Shen L, Pathan MS, Nguyen H (2003) Molecular breeding of rice for drought tolerance. In: Mew TW, Brar DS, Peng S, Dawe D, Hardy B (eds) Rice science: innovations and impact for livelihood. (Proceedings of the international rice research conference) International Rice Research Institute/Chinese Academy of Engineering/Chinese Academy of Agriculture Sciences, Beijing, pp 231–241

    Google Scholar 

  • Datta K, Datta SK (1999) Transformation of rice via PEG-mediated DNA uptake into protoplasts. Methods Mol Biol 111:335–347

    PubMed  CAS  Google Scholar 

  • Datta K, Baisakh N, Thet KM, Tu J, Datta SK (2002) Pyramiding transgenes for multiple resistances in rice against bacterial blight, yellow stem borer and sheath blight. Theor Appl Genet 106:1–8

    PubMed  CAS  Google Scholar 

  • Davenport C (1908) Degeneration, albinism and inbreeding. Science 28:454–455

    Google Scholar 

  • Di Serio F, Schob H, Iglesias A, Tarina C, Bouldoires E, Meins F Jr, (2001) Sense-and antisense-mediated gene silencing in tobacco is inhibited by the same viral suppressors and is associated with accumulation of small RNAs. Proc Natl Acad Sci USA 98:6506–6510

    PubMed  Google Scholar 

  • East EM (1908) Inbreeding in corn. Rep Conn Agric Exp Stn For 1907:419–428

    Google Scholar 

  • East EM (1936) Heterosis. Genetics 21:375–397

    PubMed  CAS  Google Scholar 

  • Ebinuma H, Sugita K, Matsunaga E, Yamakado M (1997) Selection of marker-free transgenic plants using the isopentenyl transferase gene. Proc Natl Acad Sci USA 94:2117–2121

    PubMed  CAS  Google Scholar 

  • Endo S, Sugita K, Sakai M, Tanaka H, Ebinuma H (2002) Single-step transformation for generating marker-free transgenic rice using the ipt-type MAT vector system. Plant J 30:115–122

    PubMed  CAS  Google Scholar 

  • Enoki H, Izawa T, Kawahara M, Komatsu M, Koh S, Kyozuka J, Shimamoto K (1999) Ac as a tool for the functional genomics of rice. Plant J 19:605–613

    PubMed  CAS  Google Scholar 

  • Feldmann K, Marks M (1987) Agrobacterium-mediated transformation of germinating seeds of Arabidopsis thaliana: a non-tissue culture approach. Mol Gen Genet 208:1–9

    CAS  Google Scholar 

  • Garg AK, Kim JK, Owens TG, Ranwala AP, Choi YD, Kochian LV, Wu RJ (2002) Trehalose accumulation in rice plants confers high tolerance levels to different abiotic stresses. Proc Natl Acad Sci USA 99:15898–15903

    PubMed  CAS  Google Scholar 

  • Gleave AP, Mitra DS, Mudge SR, Morris BA (1999) Selectable marker-free transgenic plants without sexual crossing: transient expression of Cre recombinase and use of a conditional lethal dominant gene. Plant Mol Biol 40:223–235

    PubMed  CAS  Google Scholar 

  • Goff SA, Ricke D, Lan TH, Presting G, Wang R, Dunn M, Glazebrook J, Sessions A, Oeller P, Varma H, Hadley D, Hutchison D, Martin C, Katagiri F, Lange BM, Moughamer T, Xia Y, Budworth P, Zhong J, Miguel T, Paszkowski U, Zhang S, Colbert M, Sun WL, Chen L, Cooper B, Park S, Wood TC, Mao L, Quail P, Wing R, Dean R, Yu Y, Zharkikh A, Shen R, Sahasrabudhe S, Thomas A, Cannings R, Gutin A, Pruss D, Reid J, Tavtigian S, Mitchell J, Eldredge G, Scholl T, Miller RM, Bhatnagar S, Adey N, Rubano T, Tusneem N, Robinson R, Feldhaus J, Macalma T, Oliphant A, Briggs S (2002) A draft sequence of the rice genome (Oryza sativa L. ssp. japonica). Science 296:92–100

    PubMed  CAS  Google Scholar 

  • Greco R, Ouwerkerk PB, Sallaud C, Kohli A, Colombo L, Puigdomenech P, Guiderdoni E, Christou P, Hoge J, Pereira A (2001a) Transposon insertional mutagenesis in rice. Plant Physiol 125:1175–1177

    PubMed  CAS  Google Scholar 

  • Greco R, Ouwerkerk PB, Taal AJ, Favalli C, Beguiristain T, Puigdomenech P, Colombo L, Hoge JH, Pereira A (2001b) Early and multiple Ac transpositions in rice suitable for efficient insertional mutagenesis. Plant Mol Biol 46:215–227

    PubMed  CAS  Google Scholar 

  • Guilley H, Dudley R, Jonard G, Balazs E, Richards K (1982) Transcription of cauliflower mosaic virus DNA: detection of promoter sequences and characterization of transcription. Cell Res 30:763–773

    CAS  Google Scholar 

  • Hamilton C, Frary A, Lewis C, Tanksley S (1996) Stable transfer of intact high molecular weight DNA into plant chromosomes. Proc Natl Acad Sci USA 93:9975–9979

    PubMed  CAS  Google Scholar 

  • Hanin M, Volrath S, Bogucki A, Briker M, Ward E, Paszkowski J (2001) Gene targeting in Arabidopsis. Plant J 28:671–677

    PubMed  CAS  Google Scholar 

  • Heath A, Fairweather-Tait S (2002) Clinical implications of changes in the modern diet: iron intake, absorption and status. Best Pract Res Clin Haematol 15:225–241

    PubMed  CAS  Google Scholar 

  • Hiei Y, Ohta S, Komari T, Kumashiro T (1994) Efficient transformation of rice (Oryza sativa L.) mediated by Agrobacterium and sequence analysis of the boundaries of the T-DNA. Plant J 6:271–282

    PubMed  CAS  Google Scholar 

  • Hiei Y, Komari T, Kubo T (1997) Transformation of rice mediated by Agrobacterium tumefaciens. Plant Mol Biol 35:205–218

    PubMed  CAS  Google Scholar 

  • High SM, Cohen MB, Shu QY, Altosaar I (2004) Achieving successful deployment of Bt rice. Trends Plant Sci 9:286–292

    PubMed  CAS  Google Scholar 

  • Hirochika H (2001) Contribution of the Tos17 retrotransposon to rice functional genomics. Curr Opin Plant Biol 4:118–122

    PubMed  CAS  Google Scholar 

  • Hohn B, Puchta H (2003) Some like it sticky: targeting of the rice gene Waxy. Trends Plant Sci 8:51–53

    PubMed  CAS  Google Scholar 

  • Howard RJ, Valent B (1996) Breaking and entering: host penetration by the fungal rice blast pathogen Magnaporthe grisea. Annu Rev Microbiol 50:491–512

    PubMed  CAS  Google Scholar 

  • Hua J, Xing Y, Wu W, Xu C, Sun X, Yu S, Zhang Q (2003) Single-locus heterotic effects and dominance by dominance interactions can adequately explain the genetic basis of heterosis in an elite rice hybrid. Proc Natl Acad Sci USA 100:2574–2579

    PubMed  CAS  Google Scholar 

  • Huang J, Hu R, Rozelle S, Pray C (2005) Insect-resistant GM rice in farmers’ fields: assessing productivity and health effects in China. Science 308:688–690

    PubMed  CAS  Google Scholar 

  • Huang Q, He Y, Jing R, Zhu R, Zhu Y (2000) Mapping of the nuclear fertility restorer gene for HL CMS in rice using microsatellite markers. Chin Sci Bull 45:430–432

    CAS  Google Scholar 

  • Isshiki M, Morino K, Nakajima M, Okagaki RJ, Wessler SR, Izawa T, Shimamoto K (1998) A naturally occurring functional allele of the rice waxy locus has a GT to TT mutation at the 5′splice site of the first intron. Plant J 15:133–138

    PubMed  CAS  Google Scholar 

  • Jan A, Yang G, Nakamura H, Ichikawa H, Kitano H, Matsuoka M, Matsumoto H, Komatsu S (2004) Characterization of a xyloglucan endotransglucosylase gene that is up-regulated by gibberellin in rice. Plant Physiol 136:3670–3681

    PubMed  CAS  Google Scholar 

  • Jeong DH, An S, Kang HG, Moon S, Han JJ, Park S, Lee HS, An K, An G (2002) T-DNA insertional mutagenesis for activation tagging in rice. Plant Physiol 130:1636–1644

    PubMed  CAS  Google Scholar 

  • Kempin SA, Liljegren SJ, Block LM, Rounsley SD, Yanofsky M, Flam E (1997) Targeted disruption in Arabidopsis. Nature 389:802–803

    PubMed  CAS  Google Scholar 

  • Khush GS (2003) Productivity improvements in rice. Nutr Rev 61:S114–116

    PubMed  Google Scholar 

  • Klee H, Horsh R, Rogers S (1987) Agrobacterium-mediated plant transformation and its further applications to plant biology. Annu Rev Plant Physiol 38:467–486

    CAS  Google Scholar 

  • Kojima S, Takahashi Y, Kobayashi Y, Monna L, Sasaki T, Araki T, Yano M (2002) Hd3a, a rice ortholog of the Arabidopsis FT gene, promotes transition to flowering downstream of Hd1 under short-day conditions. Plant Cell Physiol 43:1096–1105

    PubMed  CAS  Google Scholar 

  • Kolesnik T, Szeverenyi I, Bachmann D, Kumar CS, Jiang S, Ramamoorthy R, Cai M, Ma ZG, Sundaresan V, Ramachandran S (2004) Establishing an efficient Ac/Ds tagging system in rice: large-scale analysis of Ds flanking sequences. Plant J 37:301–314

    PubMed  CAS  Google Scholar 

  • Komari T, Hiei Y, Saito Y, Murai N, Kumashiro T (1996) Vectors carrying two separate T-DNAs for co-transformation of higher plants mediated by Agrobacterium tumefaciens and segregation of transformants free from selection markers. Plant J 10:165–174

    PubMed  CAS  Google Scholar 

  • Komatsu K, Maekawa M, Ujiie S, Satake Y, Furutani I, Okamoto H, Shimamoto K, Kyozuka J (2003a) LAX and SPA: major regulators of shoot branching in rice. Proc Natl Acad Sci USA 100:11765–11770

    PubMed  CAS  Google Scholar 

  • Komatsu M, Chujo A, Nagato Y, Shimamoto K, Kyozuka J (2003b) FRIZZY PANICLE is required to prevent the formation of axillary meristems and to establish floral meristem identity in rice spikelets. Development 130:3841–3850

    PubMed  CAS  Google Scholar 

  • Komori T, Ohta S, Murai N, Takakura Y, Kuraya Y, Suzuki S, Hiei Y, Imaseki H, Nitta N (2004) Map-based cloning of a fertility restorer gene, Rf-1, inrice (Oryza sativa L.). Plant J 37:315–325

    PubMed  CAS  Google Scholar 

  • Kusaba M (2004) RNA interference in crop plants. Curr Opin Biotechnol 15:139–143

    PubMed  CAS  Google Scholar 

  • Lawrence RJ, Pikaard CS (2003) Transgene-induced RNA interference: a strategy for overcoming gene redundancy in polyploids to generate loss-of-function mutations. Plant J 36:114–121

    PubMed  CAS  Google Scholar 

  • Lee S, Kim J, Han JJ, Han MJ, An G (2004) Functional analyses of the flowering time gene OsMADS50, the putative SUPPRESSOR OF OVER-EXPRESSION OF CO1/AGAMOUS-LIKE 20 (SOC1/AGL20) ortholog in rice. Plant J 38:754–764

    PubMed  CAS  Google Scholar 

  • Lei X (2004) China could be first nation to approve sale of GM rice. Science 306:1458–1459

    PubMed  CAS  Google Scholar 

  • Li P, Zeng D, Li J, Qian Q (2003a) Mapping and characterization of a tiller-spreading mutant lazy1–2 in rice. Chinese Sci Bull 48:2715–2717

    Google Scholar 

  • Li XB, Yi CD, Zhai WX, Yang ZY, Zhu LH (2001) A genetically modified japonica restorer line, C418–Xa21, and its hybrid rice with bacterial blight resistance (in Chinese). Sheng Wu Gong Cheng Xue Bao 17:380–384

    PubMed  CAS  Google Scholar 

  • Li X, Qian Q, Fu Z, Wang Y, Xiong G, Zeng D, Wang X, Liu X, Teng S, Hiroshi F, Yuan M, Luo D, Han B, Li J (2003b) Control of tillering in rice. Nature 422:618–621

    PubMed  CAS  Google Scholar 

  • Li Y, Qian Q, Zhou Y, Yan M, Sun L, Zhang M, Fu Z, Wang Y, Han B, Pang X, Chen M, Li J (2003c) BRITTLE CULM 1, which encodes a COBRA-like protein, affects the mechanical properties of rice plants. Plant Cell 15:2020–2031

    PubMed  CAS  Google Scholar 

  • Lin L, Liu YG, Xu X, Li B (2003) Efficient linking and transfer of multiple genes by a multigene assembly and transformation vector system. Proc Natl Acad Sci USA 100:5962–5967

    PubMed  CAS  Google Scholar 

  • Liu Q, Wang Z, Chen X, Cai X, Tang S, Yu H, Zhang J, Hong M, Gu M (2003) Stable inheritance of the antisense Waxy gene in transgenic rice with reduced amylose level and improved quality. Transgenic Res 12:71–82

    PubMed  Google Scholar 

  • Liu Q, Yao Q, Wang H, Gu M (2004) Endosperm-specific expression of the ferritin gene in transgenic rice (Oryza sativa L.) results in increased iron content of milling rice (in Chinese). Yi Chuan Xue Bao 31:518–524

    PubMed  CAS  Google Scholar 

  • Lucca P, Hurrell R, Potrykus I (2002) Fighting iron deficiency anemia with iron-rich rice. J Am Coll Nutr 21:184S–190S

    PubMed  CAS  Google Scholar 

  • Luo A, Qian Q, Yin H, Liu X, Yin C, Lan Y, Tang J, Tang Z, Cao S, Wang X, Xia K, Fu X, Luo D, Chu C (2006) EUI1, encoding a putative cytochrome P450 monooxygenase, regulates internode elongation by modulating gibberellin responses in rice. Plant Cell Physiol 47:181–191

    PubMed  CAS  Google Scholar 

  • McElroy D, Zhang W, Cao J, Wu R (1990) Isolation of an efficient actin promoter for use in rice transformation. Plant Cell 2:163–171

    PubMed  CAS  Google Scholar 

  • Miki D, Shimamoto K (2004) Simple RNAi vectors for stable and transient suppression of gene function in rice. Plant Cell Physiol 45:490–495

    PubMed  CAS  Google Scholar 

  • Miyao A, Tanaka K, Murata K, Sawaki H, Takeda S, Abe K, Shinozuka Y, Onosato K, Hirochika H (2003) Target site specificity of the Tos17 retrotransposon shows a preference for insertion within genes and against insertion in retrotransposon-rich regions of the genome. Plant Cell 15:1771–1780

    PubMed  Google Scholar 

  • Miyoshi K, Ito Y, Serizawa A, Kurata N (2003) OsHAP3 genes regulate chloroplast biogenesis in rice. Plant J 36:532–540

    PubMed  CAS  Google Scholar 

  • Miyoshi K, Ahn BO, Kawakatsu T, Ito Y, Itoh J, Nagato Y, Kurata N (2004) PLASTOCHRON1, a timekeeper of leaf initiation in rice, encodes cytochrome P450. Proc Natl Acad Sci USA 101:875–880

    PubMed  CAS  Google Scholar 

  • Monna L, Kitazawa N, Yoshino R, Suzuki J, Masuda H, Maehara Y, Tanji M, Sato M, Nasu S, Minobe Y (2002) Positional cloning of rice semidwarfing gene, sd — 1: rice “green revolution gene” encodes a mutant enzyme involved in gibberellin synthesis. DNA Res 9:11–17

    PubMed  CAS  Google Scholar 

  • Paine J, Shipton C, Chaggar S, Howells R, Kennedy M, Vernon G, Wright S, Hinchliffe E, Adams JL, Silverstone A, Drake R (2005) Improving the nutritional value of Golden Rice through increased pro-vitamin A content. Nat Biotechnol 23:482–487

    PubMed  CAS  Google Scholar 

  • Peterhans A, Datta S, Datta K, Goodall G, Potrykus I, Paszkowski J (1990) Recognition efficiency of dicotyledonous-specific promoter and RNA processing signals in rice. Mol Gen Genet 222:361–368

    PubMed  CAS  Google Scholar 

  • Rabbani MA, Maruyama K, Abe H, Khan MA, Katsura K, Ito Y, Yoshiwara K, Seki M, Shinozaki K, Yamaguchi-Shinozaki K (2003) Monitoring expression profiles of rice genes under cold, drought, and high-salinity stresses and abscisic acid application using cDNA microarray and RNA gel-blot analyses. Plant Physiol 133:1755–1767

    PubMed  CAS  Google Scholar 

  • Ren ZH, Gao JP, Li LG, Cai XL, Huang W, Chao DY, Zhu MZ, Wang ZY, Luan S, Lin HX (2005) A rice quantitative trait locus for salt tolerance encodes a sodium transporter. Nat Genet 37:1141–1146

    PubMed  CAS  Google Scholar 

  • Sakamoto T, Morinaka Y, Ishiyama K, Kobayashi M, Itoh H, Kayano T, Iwahori S, Matsuoka M, Tanaka H (2003) Genetic manipulation of gibberellin metabolism in transgenic rice. Nat Biotechnol 21:909–913

    PubMed  CAS  Google Scholar 

  • Sakamoto T, Morinaka Y, Ohnishi T, Sunohara H, Fujioka S, Ueguchi-Tanaka M, Mizutani M, Sakata K, Takatsuto S, Yoshida S, Tanaka H, Kitano H, Matsuoka M (2006) Erect leaves caused by brassinosteroid deficiency increase biomass production and grain yield in rice. Nat Biotechnol 24:105–109

    PubMed  CAS  Google Scholar 

  • Sallaud C, Gay C, Larmande P, Bes M, Piffanelli P, Piegu B, Droc G, Regad F, Bourgeois E, Meynard D, Perin C, Sabau X, Ghesquiere A, Glaszmann JC, Delseny M, Guiderdoni E (2004) High throughput T-DNA insertion mutagenesis in rice: a first step towards in silico reverse genetics. Plant J 39:450–464

    PubMed  CAS  Google Scholar 

  • Sasaki A, Ashikari M, Ueguchi-Tanaka M, Itoh H, Nishimura A, Swapan D, Ishiyama K, Saito T, Kobayashi M, Khush GS, Kitano H, Matsuoka M (2002) Green revolution: a mutant gibberellin-synthesis gene in rice. Nature 416:701–702

    PubMed  CAS  Google Scholar 

  • Sesma A, Osbourn AE (2004) The rice leaf blast pathogen undergoes developmental processes typical of root-infecting fungi. Nature 431:582–586

    PubMed  CAS  Google Scholar 

  • Shen YJ, Jiang H, Jin JP, Zhang ZB, Xi B, He YY, Wang G, Wang C, Qian L, Li X, Yu QB, Liu HJ, Chen DH, Gao JH, Huang H, Shi TL, Yang ZN (2004) Development of genome-wide DNA polymorphism database for map-based cloning of rice genes. Plant Physiol 135:1198–1205

    PubMed  CAS  Google Scholar 

  • Sheng CF (2003) The current status on large scale occurrence of rice stem borers, their loss estimation and control and protection strategies in China. Plant Prot 29:37–39

    Google Scholar 

  • Shimamoto K, Miyazaki C, Hashimoto H, Izawa T, Itoh K, Terada R, Inagaki Y, Iida S (1993) Trans-activation and stable integration of the maize transposable element Ds cotransfected with the Ac transposase gene in transgenic rice plants. Mol Gen Genet 239:354–360

    PubMed  CAS  Google Scholar 

  • Shinjyo C (1984) Cytoplasmic male sterility and fertility restoration in rice having genome A. In: Tsunoda S, Takahashi N (eds) Biology of rice. Elsevier, Amsterdam, pp 321–338

    Google Scholar 

  • Singh S, Sidhu JS, Huang N, Vikal Y, Li Z, Brar DS, Khaliwal Hs, Khush GS (2001) Pyramiding three bacterial blight resistance genes (xa5, xa13 and Xa21) using marker-assisted selection into indica rice cultivar PR106. Theor Appl Genet 102:1011–1015

    CAS  Google Scholar 

  • Song F, Goodman R (2001) Molecular biology of disease resistance in rice. Physiol Mol Plant Pathol 59:1–11

    CAS  Google Scholar 

  • Song WY, Wang GL, Chen LL, Kim HS, Pi LY, Holsten T, Gardner J, Wang B, Zhai WX, Zhu LH, Fauquet C, Ronald P (1995) A receptor kinase-like protein encoded by the rice disease resistance gene, Xa21. Science 270:1804–1806

    PubMed  CAS  Google Scholar 

  • Spielmeyer W, Ellis MH, Chandler PM (2002) Semidwarf (sd-1), “green revolution” rice, contains a defective gibberellin 20-oxidase gene. Proc Natl Acad Sci USA 99:9043–9048

    PubMed  CAS  Google Scholar 

  • Sun X, Cao Y, Yang Z, Xu C, Li X, Wang S, Zhang Q (2004) Xa26, a gene conferring resistance to Xanthomonas oryzae pv. oryzae in rice, encodes an LRR receptor kinase-like protein. Plant J 37:517–527

    PubMed  CAS  Google Scholar 

  • Takahashi Y, Shomura A, Sasaki T, Yano M (2001) Hd6, a rice quantitative trait locus involved in photoperiod sensitivity, encodes the α subunit of protein kinase CK2. Proc Natl Acad Sci USA 98:7922–7927

    PubMed  CAS  Google Scholar 

  • Talbot NJ (2003) On the trail of a cereal killer: exploring the biology of Magnaporthe grisea. Annu Rev Microbiol 57:177–202

    PubMed  CAS  Google Scholar 

  • Teerawanichpan P, Chandrasekharan MB, Jiang Y, Narangajavana J, Hall TC (2004) Characterization of two rice DNA methyltransferase genes and RNAi-mediated reactivation of a silenced transgene in rice callus. Planta 218:337–349

    PubMed  CAS  Google Scholar 

  • Terada R, Urawa H, Inagaki Y, Tsugane K, Iida S (2002) Efficient gene targeting by homologous recombination in rice. Nat Biotechnol 20:1030–1034

    PubMed  CAS  Google Scholar 

  • Ueguchi-Tanaka M, Ashikari M, Nakajima M, Itoh H, Katoh E, Kobayashi M, Chow TY, Hsing YI, Kitano H, Yamaguchi I, Matsuoka M (2005) GIBBERELLIN INSENSITIVE DWARF1 encodes a soluble receptor for gibberellin. Nature 437:693–698

    PubMed  CAS  Google Scholar 

  • Ussuf K, Laxmi N, Mitra R (2001) Proteinase inhibitors: plant-derived genes of insecticidal protein for developing insect-resistant transgenic plants. Curr Sci 80:847–853

    CAS  Google Scholar 

  • Vasconcelos M, Datta K, Oliva N, Khalekuzzaman M, Torrizo L, Krishnan S, Oliveira M, Goto F, Datta S (2003) Enhanced iron and zinc accumulation in transgenic rice with the ferritin gene. Plant Sci 164:371–378

    CAS  Google Scholar 

  • Virmani SS, Sun ZX, Mou TM, Jauhar AA, Mao CX (2003) Two-line hybrid rice breeding manual. International Rice Research Institute, Los Banos, Philippines

    Google Scholar 

  • Wang GL, Wu C, Zeng L, He C, Baraoidan M, de Assis Goes da Silva F, Williams CE, Ronald PC, Leung H (2004) Isolation and characterization of rice mutants compromised in Xa21-mediated resistance to X. oryzae pv. oryzae. Theor Appl Genet 108:379–384

    PubMed  CAS  Google Scholar 

  • Wang J, Oard JH (2003) Rice ubiquitin promoters: deletion analysis and potential usefulness in plant transformation systems. Plant Cell Rep 22:129–134

    PubMed  CAS  Google Scholar 

  • Wang J, Jiang J, Oard JH (2000) Structure, expression and promoter activity of two polyubiquitin genes from rice (Oryza sativa L.). Plant Sci 156:201–211

    PubMed  CAS  Google Scholar 

  • Wang Z, Zou Y, Li X, Zhang Q, Chen L, Wu H, Su D, Chen Y, Guo J, Luo D, Long Y, Zhong Y, Liu YG (2006) Cytoplasmicmale sterility of rice with boro II cytoplasm is caused by a cytotoxic peptide and is restored by two related PPR motif genes via distinct modes of mRNA silencing. Plant Cell 18:676–687

    PubMed  CAS  Google Scholar 

  • Waterhouse PM, Helliwell CA (2003) Exploring plant genomes by RNA-induced gene silencing. Nat Rev Genet 4:29–38

    PubMed  CAS  Google Scholar 

  • Wong HL, Sakamoto T, Kawasaki T, Umemura K, Shimamoto K (2004) Down-regulation of metallothionein, a reactive oxygen scavenger, by the small GTPase OsRac1 in rice. Plant Physiol 135:1447–1456

    PubMed  CAS  Google Scholar 

  • Wu C, Li X, Yuan W, Chen G, Kilian A, Li J, Xu C, Zhou DX, Wang S, Zhang Q (2003) Development of enhancer trap lines for functional analysis of the rice genome. Plant J 35:418–427

    PubMed  CAS  Google Scholar 

  • Yamanouchi U, Yano M, Lin H, Ashikari M, Yamada K (2002) A rice spotted leaf gene, Spl7, encodes a heat stress transcription factor protein. Proc Natl Acad Sci USA 99:7530–7535

    PubMed  CAS  Google Scholar 

  • Yamazaki M, Tsugawa H, Miyao A, Yano M, Wu J, Yamamoto S, Matsumoto T, Sasaki T, Hirochika H (2001) The rice retrotransposon Tos17 prefers low-copy-number sequences as integration targets. Mol Genet Genomics 265:336–344

    PubMed  CAS  Google Scholar 

  • Yano M, Katayose Y, Ashikari M, Yamanouchi U, Monna L, Fuse T, Baba T, Yamamoto K, Umehara Y, Nagamura Y, Sasaki T (2000) Hd1, a major photoperiod sensitivity quantitative trait locus in rice, is closely related to the Arabidopsis flowering time gene CONSTANS. Plant Cell 12:2473–2484

    PubMed  CAS  Google Scholar 

  • Yao F, Xu C, Yu S, Li J, Gao Y, Li X, Zhang Q (1997) Mapping and genetic analysis of two fertility restorer loci in wild-abortive cytoplasmic male sterility system of rice (Oryza sativa L.). Euphytica 98:183–187

    CAS  Google Scholar 

  • Ye GY, Tu J, Hu C, Datta K, Datta SK (2001) Transgenic IR72 with fused Bt gene cry1Ab/cry1 Ac from Bacillus thuringiensis is resistant against four lepidopteran species under field conditions. Plant Biotechnol 18:125–133

    CAS  Google Scholar 

  • Yoshimura S, Yamanouchi U, Katayose Y, Toki S, Wang ZX, Kono I, Kurata N, Yano M, Iwata N, Sasaki T (1998) Expression of Xa1, a bacterial blight-resistance gene in rice, is induced by bacterial inoculation. Proc Natl Acad Sci USA 95:1663–1668

    PubMed  CAS  Google Scholar 

  • Yu J, Hu S, Wang J, Wong GK, Li S, Liu B, Deng Y, Dai L, Zhou Y, Zhang X, Cao M, Liu J, Sun J, Tang J, Chen Y, Huang X, Lin W, Ye C, Tong W, Cong L, Geng J, Han Y, Li L, Li W, Hu G, Li J, Liu Z, Qi Q, Li T, Wang X, Lu H, Wu T, Zhu M, Ni P, Han H, Dong W, Ren X, Feng X, Cui P, Li X, Wang H, Xu X, Zhai W, Xu Z, Zhang J, He S, Xu J, Zhang K, Zheng X, Dong J, Zeng W, Tao L, Ye J, Tan J, Chen X, He J, Liu D, Tian W, Tian C, Xia H, Bao Q, Li G, Gao H, Cao T, Zhao W, Li P, Chen W, Zhang Y, Hu J, Liu S, Yang J, Zhang G, Xiong Y, Li Z, Mao L, Zhou C, Zhu Z, Chen R, Hao B, Zheng W, Chen S, Guo W, Tao M, Zhu L, Yuan L, Yang H (2002) A draft sequence of the rice genome (Oryza sativa L. ssp. indica). Science 296:79–92

    PubMed  CAS  Google Scholar 

  • Yu J, Wang J, Lin W, Li S, Li H, Zhou J, Ni P, Dong W, Hu S, Zeng C, Zhang J, Zhang Y, Li R, Xu Z, Li X, Zheng H, Cong L, Lin L, Yin J, Geng J, Li G, Shi J, Liu J, Lv H, Li J, Deng Y, Ran L, Shi X, Wang X, Wu Q, Li C, Ren X, Li D, Liu D, Zhang X, Ji Z, Zhao W, Sun Y, Zhang Z, Bao J, Han Y, Dong L, Ji J, Chen P, Wu S, Xiao Y, Bu D, Tan J, Yang L, Ye C, Xu J, Zhou Y, Yu Y, Zhang B, Zhuang S, Wei H, Liu B, Lei M, Yu H, Li Y, Xu H, Wei S, He X, Fang L, Huang X, Su Z, Tong W, Tong Z, Ye J, Wang L, Lei T, Chen C, Chen H, Huang H, Zhang F, Li N, Zhao C, Huang Y, Li L, Xi Y, Qi Q, Li W, Hu W, Tian X, Jiao Y, Liang X, Jin J, Gao L, Zheng W, Hao B, Liu S, Wang W, Yuan L, Cao M, McDermott J, Samudrala R, Wong GK, Yang H (2005) The Genomes of Oryza sativa: a history of duplications. PLoS Biol 3:e38

    PubMed  Google Scholar 

  • Yu SB, Li JX, Xu CG, Tan YF, Gao YJ, Li XH, Zhang Q, Maroof MA (1997) Importance of epistasis as the genetic basis of heterosis in an elite rice hybrid. Proc Natl Acad Sci USA 94:9226–9231

    PubMed  CAS  Google Scholar 

  • Yuan L (2004) Hybrid rice technology for food security in the world. In: FAO (ed) Proceedings of the 53rd FAO rice conference. Food and Agriculture Organization of the United Nations, Rome

    Google Scholar 

  • Zambryski P (1988) Basic processes underlying Agrobacterium-mediated DNA transfer to plant cell. Annu Rev Genet 22:1–30

    PubMed  CAS  Google Scholar 

  • Zeng LR, Qu S, Bordeos A, Yang C, Baraoidan M, Yan H, Xie Q, Nahm BH, Leung H, Wang GL (2004) Spotted leaf11, a negative regulator of plant cell death and defense, encodes a u-box/armadillo repeat protein endowed with E3 ubiquitin ligase activity. Plant Cell 16:2795–2808

    PubMed  CAS  Google Scholar 

  • Zhai W, Chen C, Zhu X, Chen X, Zhang D, Li X, Zhu L (2004) Analysis of T-DNA-Xa21 loci and bacterial blight resistance effects of the transgene Xa21 in transgenic rice. Theor Appl Genet 109:534–542

    PubMed  CAS  Google Scholar 

  • Zhang G, Bharaji T, Lu Y, Virmani S, Huang N (1997) Mapping of the Rf-3 nuclear fertility-restoring gene for WA cytoplasmic male sterility in rice using RAPD and RFLP markers. Theor Appl Genet 94:27–33

    CAS  Google Scholar 

  • Zhang N, Xu Y, Akash M, McCouch S, Oard JH (2005) Identification of candidate markers associated with agronomic traits in rice using discriminant analysis. Theor Appl Genet 110:721–729

    PubMed  CAS  Google Scholar 

  • Zhang Q, Liu Y, Mei M (2002) Molecular mapping of the fertility restorer gene Rf4 for WA cytoplasmic male sterility. Acta Genet Sin 29:1001–1004

    PubMed  Google Scholar 

  • Zhao B, Wang WM, Zheng XW, Wang CL, Ma BJ, Xue QZ, Zhu LH, Zhai WX (2000) Introduction of wide spectrum rice bacterial blight resistance gene Xa21 into two-line genic male sterile rice variety Pei’ai 64S (in Chinese). Sheng Wu Gong Cheng Xue Bao 16:137–141

    PubMed  Google Scholar 

  • Zhu Y, Nomura T, Xu Y, Zhang Y, Peng Y, Mao B, Hanada A, Zhou H, Wang R, Li P, Zhu X, Mander LN, Kamiya Y, Yamaguchi S, He Z (2006). ELONGATED UPPERMOST INTERNODE encodes a cytochrome P450 monooxygenase that epoxidizes gibberellins in a novel deactivation reaction in rice. Plant Cell 18:442–456

    PubMed  CAS  Google Scholar 

  • Zubko E, Scutt C, Meyer P (2000) Intrachromosomal recombination between attP regions as a tool to remove selectable marker genes from tobacco transgenes. Nat Biotechnol 18:442–445

    PubMed  CAS  Google Scholar 

  • Zuo J, Niu QW, Moller SG, Chua NH (2001) Chemical-regulated, site-specific DNA excision in transgenic plants. Nat Biotechnol 19:157–161

    PubMed  CAS  Google Scholar 

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Wang, Y., Chen, M., Li, J. (2007). Rice. In: Pua, EC., Davey, M.R. (eds) Transgenic Crops IV. Biotechnology in Agriculture and Forestry, vol 59. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-540-36752-9_2

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