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Metabolic Models: From DNA to Physiology (and Back)

  • Marcio Argollo de MenezesEmail author
Chapter
Part of the Computational Biology book series (COBO, volume 27)

Abstract

Metabolic reconstructions constitute translations from genomic data to biochemical processes and serve as valuable tools to assess, along with mathematical models, the viability of organisms on different environments or the overproduction of industrially valuable metabolites following controlled manipulation of specific reaction rates. In the following, we review FBA, a constraint-based mathematical method which successfully predicts genome-wide metabolic fluxes, most notably the rate of accumulation of biomass precursors with stoichiometry determined by the cellular biomass composition. The practical implementation of the method on a synthetic metabolic model is offered as computer codes written for GNU-Octave, an open-source language with powerful numerical tools.

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Copyright information

© Springer International Publishing AG, part of Springer Nature 2018

Authors and Affiliations

  1. 1.Instituto de FísicaUniversidade Federal Fluminense (UFF)NiteróiBrazil

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