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The Wild Oryza Genomes pp 239–258Cite as

Oryza officinalis Complex

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Part of the book series: Compendium of Plant Genomes ((CPG))

Abstract

Oryza officinalis complex is the largest species complex within the genus Oryza, consisting of both diploid and allotetraploid species. It contains at least ten reported perennial species (O. officinalis, O. rhizomatis, O. eichengeri, O. minuta, O. malampuzhaensis, O. punctata, O. latifolia, O. alta, O. grandiglumis, O. schweinfurthiana and O. australiensis) distributed throughout the tropics. Most of the allotetraploid species in this group have originated recently, and their progenitors are also naturally available in many cases. This provides a unique opportunity to study evolution of polyploidy within the genus Oryza. Classical cytogenetic techniques like karyotyping, meiotic pairing have provided valuable information in this regard. Most of the diploid and allotetraploid species contain ‘C’ genome except diploid O. punctata (BB) and O. australiensis (EE). Till date, whole genome sequence is available only for O. punctata and rest are under progress. Considerable success has been achieved in terms of developing genetic stock through wide hybridization and mapping agronomically important genes from the species of O. officinalis complex. Successful introgressions of brown plant hopper resistance and bacterial leaf blight resistance to the cultivated varieties have been achieved from these genetic stocks. Molecular marker resources to facilitate such alien gene introgression events are becoming more and more available. In order to address the problem of world food security, global importance has been laid on utilization of wild resource in rice. With focused objectives and rapidly emerging scientific and technological know-how, we can expect much more efficient utilization of the O. officinalis complex in future rice improvement.

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References

  • Aggarwal RK, Brar DS, Huang N, Khush GS (1996) Differentiation within CCDD genome species in the genus Oryza as revealed by total genomic hybridization and RFLP analysis. Rice Genet Newslett 13:54–57

    Google Scholar 

  • Aggarwal RK, Brar DS, Nandi S, Huang N, Khush GS (1999) Phylogenetic relationships among Oryza species revealed by AFLP markers. Theor Appl Genet 98:1320–1328

    Article  CAS  Google Scholar 

  • Amante-Bordeos A, Sitch LA, Nelson R, Dalmacio RD, Oliva NP, Aswidinnoor H, Leung H (1992) Transfer of bacterial blight and blast resistance from the tetraploid wild rice Oryza minuta to cultivated rice, Oryza sativa. Theor Appl Genet 84:345–354

    CAS  PubMed  Google Scholar 

  • Ammiraju JS, Luo M, Goicoechea JL, Wang W, Kudrna D, Mueller C, Fang E (2006) The Oryza bacterial artificial chromosome library resource: construction and analysis of 12 deep-coverage large-insert BAC libraries that represent the 10 genome types of the genus Oryza. Genome Res 16:140–147

    Article  PubMed  PubMed Central  Google Scholar 

  • Angeles-Shim RB, Vinarao RB, Marathi, Jena KK (2014) Molecular analysis of Oryza latifolia Desv.(CCDD genome)-derived introgression lines and identification of value-added traits for rice (O. sativa L.) improvement. J Hered 105(5):676–89. https://doi.org/10.1093/jhered/esu032

  • Apweiler R, Bairoch A, Wu CH, Barker C, Boeckmann B, Ferro S (2004) UniProt: the universal protein knowledgebase. Nucl Acid Res 32(suppl_1):D115–D119

    Article  CAS  Google Scholar 

  • Bao Y, Ge S (2004) Origin and phylogeny of Oryza species with the CD genome based on multiple-gene sequence data. Plant Sys Evol 249:55–66

    Article  CAS  Google Scholar 

  • Bao Y, Lu BR, Ge S (2005) Identification of genomic constitutions of Oryza species with the B and C genomes by the PCR-RFLP method. GenetResour Crop Evol 52:69–76

    Article  CAS  Google Scholar 

  • Bao Y, Xu S, Jing X, Meng L, Qin Z (2015) De novo assembly and characterization of Oryza officinalis leaf transcriptome by using RNA-Seq. Bio Med Res Int 2015:982065

    Google Scholar 

  • Bautista NS, Vaughan D, Jayasuriya AH, Liyanage AS, Kaga A, Tomooka N (2006) Genetic diversity in AA and CC genome Oryza species in southern South Asia. Genet Resour Crop Evol 53:631–640

    Article  CAS  Google Scholar 

  • Brar DS, Khush GS (2002) Transferring genes from wild species into rice. In: Quantitative Genetics, Genomics and Plant Breeding, CABI, New York, pp 197–217

    Google Scholar 

  • Brar DS, Singh K (2011) Oryza. In: Kole C (ed) Wild crop relatives: genomic and breeding resources: cereals, vol 1. Springer Science Business Media, Berlin, pp 321–366

    Chapter  Google Scholar 

  • Brar DS, Dalmacio R, Elloran R, Aggarwal R, Angeles R, Khush GS (1996) Gene transfer and molecular characterization of introgression from wild Oryza species into rice. In Third international rice genetics symposium, IRRI, Manila (Philippines), 16–20 Oct 1995

    Google Scholar 

  • Buggs RJ, Chamala S, Wu W, Tate JA, Schnable PS, Soltis DE, Barbazuk WB (2012) Rapid, repeated, and clustered loss of duplicate genes in allopolyploid plant populations of independent origin. Curr Biol 22:248–252

    Article  CAS  PubMed  Google Scholar 

  • Buso GSC, Rangel PHN, Ferreira ME (2001) Analysis of random and specific sequences of nuclear and cytoplasmic DNA in diploid and tetraploid American wild rice species (Oryza spp). Genome 44:476–494

    Article  CAS  PubMed  Google Scholar 

  • Doyle JJ, Flagel LE, Paterson AH, Rapp RA, Soltis DE, Soltis PS, Wendel JF (2008) Evolutionary genetics of genome merger and doubling in plants. Ann Rev Genet 42:443–461

    Article  CAS  PubMed  Google Scholar 

  • Federici MT, Shcherban AB, Capdevielle F, Francis M, Vaughan D (2002) Analysis of genetic diversity in the Oryza officinalis complex. Elect J Biotech 5:16–17

    Google Scholar 

  • Fukui K, Shishido R, Kinoshita T (1997) Identification of the rice D-genome chromosomes by genomic in situ hybridization. Theor Appl Genet 95:1239–1245

    Article  CAS  Google Scholar 

  • Ge S, Sang T, Lu BR, Hong DY (1999) Phylogeny of rice genomes with emphasis on origins of allotetraploid species. Proc Nat Acad Sci 96:14400–14405

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Goicoechea JL, Ammiraju JSS, Marri PR, Chen M, Jackson S, Yu Y, Wing RA (2010) The future of rice genomics: sequencing the collective Oryza genome. Rice 3:89–97

    Article  Google Scholar 

  • Gu K, Tian D, Yang FWUL, Wu L, Sreekala C, Wang D, Yin Z (2004) High-resolution genetic mapping of Xa27 (t), a new bacterial blight resistance gene in rice, Oryza sativa L. Theor Appl Genet 108:800–807

    Article  CAS  PubMed  Google Scholar 

  • Gu K, Yang B, Tian D, Wu L, Wang D, Sreekala C, Yin Z (2005) R gene expression induced by a type-III effector triggers disease resistance in rice. Nature 435:1122–1125

    Article  CAS  PubMed  Google Scholar 

  • Guo YL, Ge S (2005) Molecular phylogeny of Oryzeae (Poaceae) based on DNA sequences from chloroplast, mitochondrial, and nuclear genomes. AmerJ Bot 92:1548–1558

    Article  CAS  Google Scholar 

  • Hayashi Y, Kyozuka J, Shimamoto K (1988) Hybrids of rice (Oryza sativa L) and wild Oryza species obtained by cell fusion. Mol Gen Genet MGG 214:6–10

    Article  Google Scholar 

  • He B, Gu Y, Tao X, Cheng X, Wei C, Fu J, Zhang Y (2015) De novo transcriptome sequencing of Oryza officinalis wall ex watt to identify disease-resistance genes. Int J Mol Sci 16:29482–29495

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Hegarty MJ, Barker GL, Wilson ID, Abbott RJ, Edwards KJ, Hiscock SJ (2006) Transcriptome shock after interspecific hybridization in Senecio is ameliorated by genome duplication. Curr Biol 16:1652–1659

    Article  CAS  PubMed  Google Scholar 

  • Hirabayashi H, Kaji R, Okamoto M, Ogawa T, Brar DS, Angeles ER, Khush GS (1998) Mapping QTLs for brown planthopper (BPH) resistance introgressed from Oryza officinalis in rice. Advances in rice genetics, pp 268–270

    Google Scholar 

  • Hu CH (1961) Comparative karyological studies of wild and cultivated species of Oryza. Taiwan Provincial College of Agriculture, Taiwan

    Google Scholar 

  • Hu CH (1970) Cytogenetic studies of Oryza officinalis complex. 4 F1 hybrids of O. minuta and O. grandiglumis with 4x O. officinalis. Indian J Genet. Plant Breed 30(2):410–417

    Google Scholar 

  • Hu CH, Chang CC (1965) A note of F1 hybrids between Oryza punctata and its related species. Jap J Breeding 15:281–283

    Article  Google Scholar 

  • Huang Z, He G, Shu L, Li X, Zhang Q (2001) Identification and mapping of two brown planthopper resistance genes in rice. Theor Appl Genet 102:929–934

    Article  CAS  Google Scholar 

  • Ishii T, Brar DS, Multani DS, Khush GS (1994) Molecular tagging of genes for brown planthopper resistance and earliness introgressed from Oryza australiensis into cultivated rice, O. sativa. Genome 37:217–221

    Article  CAS  PubMed  Google Scholar 

  • Jackson S, Chen ZJ (2010) Genomic and expression plasticity of polyploidy. Curr Opin Plant Biol 13:153–159

    Article  CAS  PubMed  Google Scholar 

  • Jacquemin J, Bhatia D, Singh K, Wing RA (2013) The International Oryza map alignment project: development of a genus-wide comparative genomics platform to help solve the 9 billion-people question. Curr Opin Plant Biol 16:147–156

    Article  CAS  PubMed  Google Scholar 

  • Jena KK, Khush GS (1986) Production of monosomic alien addition lines of Oryza sativa having a single chromosome of O. officinalis In: Rice genetics proceedings of the international rice genetics symposium, 27–31 May 1985, IRRI, Manila, Philippines, pp 199–208

    Google Scholar 

  • Jena KK, Khush GS (1990) Introgression of genes from Oryza officinalis Well ex Watt to cultivated rice, O. sativa L. Theor Appl Genet 80:737–745

    Article  CAS  PubMed  Google Scholar 

  • Jena KK, Kochert G (1991) Restriction fragment length polymorphism analysis of CCDD genome species of the genus Oryza L. Plant Mol Biol 16:831–839

    Article  CAS  PubMed  Google Scholar 

  • Jena KK, Khush GS, Kochert G (1994) Comparative RFLP mapping of a wild rice, Oryza officinalis, and cultivated rice, O. sativa. Genome 37:382–389

    Article  CAS  PubMed  Google Scholar 

  • Jena KK, Pasalu IC, Rao YK, Varalaxmi Y, Krishnaiah K, Khush GS, Kochert G (2003) Molecular tagging of a gene for resistance to brown planthopper in rice (Oryza sativa L). Euphytica 129:81–88

    Article  CAS  Google Scholar 

  • Jena KK, Jeung JU, Lee JH, Choi HC, Brar DS (2006) High-resolution mapping of a new brown planthopper (BPH) resistance gene, Bph18 (t), and marker-assisted selection for BPH resistance in rice (Oryza sativa L). Theor Appl Genet 112:288–297

    Article  CAS  PubMed  Google Scholar 

  • Jeung JU, Kim BR, Cho YC, Han SS, Moon HP, Lee YT, Jena KK (2007) A novel gene, Pi40 (t), linked to the DNA markers derived from NBS-LRR motifs confers broad spectrum of blast resistance in rice. Theor Appl Genet 115:1163–1177

    Article  CAS  PubMed  Google Scholar 

  • Jin H, Tan G, Brar DS, Tang M, Li G, Zhu L, He G (2006) Molecular and cytogenetic characterization of an Oryza officinalis–O sativa chromosome 4 addition line and its progenies. Pl Mol Biol 62:769–777

    Article  CAS  Google Scholar 

  • Joshi SP, Gupta VS, Aggarwal RK, Ranjekar PK, Brar DS (2000) Genetic diversity and phylogenetic relationship as revealed by inter simple sequence repeat (ISSR) polymorphism in the genus Oryza. Theor Appl Genet 100:1311–1320

    Article  CAS  Google Scholar 

  • Joseph L, Kuriachan P, Thomas G (2008) Is Oryza malampuzhaensis Krish. et Chand. (Poaceae) a valid species? Evidence from morphological and molecular analyses. Genet Resour Crop Ev 270:75–94

    Google Scholar 

  • Katayama T (1967) Cytogenetical studies on Oryza. Proc Jap Acad Sci 43:327–331

    Google Scholar 

  • Katayama T (1982) Cytogenetical studies on the genus Oryza. Jap J Genet 57:613–621

    Article  Google Scholar 

  • Kaushal P (1998) Crossability of wild species of Oryza with O. sativa cvs PR 106 and Pusa Basmati 1 for transfer of bacterial leaf blight resistance through interspecific hybridization. J Agr Sci 130:423–430

    Article  Google Scholar 

  • Kihara H, Nezu M (1960) Genome analysis in the genus Oryza. Annual Report (1959). Natl Inst Genet Jpn 10:37–39

    Google Scholar 

  • Kim H, San Miguel P, Nelson W, Collura K, Wissotski M, Walling JG, Wing RA (2007) Comparative physical mapping between Oryza sativa (AA genome type) and O. punctata (BB genome type). Genetics 176:379–390

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Kim H, Hurwitz B, Yu Y, Collura K, Gill N, SanMiguel P, Braidotti M (2008) Construction, alignment and analysis of twelve framework physical maps that represent the ten genome types of the genus Oryza. Genome Biol 9:R45

    Article  PubMed  PubMed Central  Google Scholar 

  • Kurata N, Omura T (1982) Karyotype analysis in rice: III karyological comparisons among four Oryza Species. Jap J Breed 32:253–258

    Article  Google Scholar 

  • Lakshmanan P, Velusamy R (1991) Resistance to sheath rot (ShR) of breeding lines derived from Oryza officinalis. International Rice Research Newsletter 16:8–9

    Google Scholar 

  • Lang NT, Buu BC (2003) Genetic and physical maps of gene Bph-10 controling brown plant hopper resistance in rice (Oryza sativa L). Omonrice 11:35–41

    Google Scholar 

  • Li HW, Chen CC, Weng TS, Wuu KD (1963) Cytogenetical studies of Oryza sativa L and its related species 4 Interspecific crosses involving O australiensis with O sativa and O minuta. Bot Bull Acad Sinica 4:65–74

    Google Scholar 

  • Li CB, Zhang DM, Ge S, Lu BR, Hong DY (2001) Differentiation and inter-genomic relationships among C, E and D genomes in the Oryza officinalis complex (Poaceae) as revealed by multicolor genomic in situ hybridization. Theor Appl Genet 103:197–203

    Article  CAS  Google Scholar 

  • Li G, Hu W, Qin R, Jin H, Tan G, Zhu L, He G (2008) Simple sequence repeat analyses of interspecific hybrids and MAALs of Oryza officinalis and Oryza sativa. Genetica 134(2):169–180

    Google Scholar 

  • Liu G, Lu G, Zeng L, Wang GL (2002) Two broad-spectrum blast resistance genes, Pi9 (t) and Pi2 (t), are physically linked on rice chromosome 6. Mol Genet Genomics 267:472–480

    Article  CAS  PubMed  Google Scholar 

  • Lu BR (1999) Taxonomy of the genus Oryza (Poaceae): historical perspective and current status. Int Rice Res Notes 243:4–8

    Google Scholar 

  • Maclean JL (2002) Rice almanac: source book for the most important economic activity on earth. IRRI, Manila

    Book  Google Scholar 

  • Madurangi SAP, Samarasinghe WLG, Senanayake SGJN, Hemachandra PV, Ratnasekera D (2011) Resistance of Oryza nivara and Oryza eichingeri derived lines to brown planthopper, Nilaparvata lugens (Stal). J Natl Sci Found Sri 39:175–181

    Google Scholar 

  • Morinaga T (1943) Cytogenetical studies on Oryza sativa L VI The cytogenetics of a hybrid of O. minuta Presl and O. latifolia Desv. Jap J Bot 12:347–357

    Google Scholar 

  • Morinaga T, Kuriyama H (1959) Genomic constitution of Oryza officinalis. Jpn J Breed 9:259

    Google Scholar 

  • Morinaga T, Kuriyama H (1960) Interspecific hybrids and genetic constitution of various species in the genus Oryza. Agr Hort 35:935–938

    Google Scholar 

  • Morinaga T, Kuriyama Murty VVS (1962) On the interspecific hybrids of Oryza officinalis and O australiensis. Jpn J Breed 12:193 (abst in Japanese)

    Google Scholar 

  • Morinaga T, Kuriyama H, Ono S (1962) On the interspecific hybrids of Oryza officinalis and O australiensis. Jpn J Genet 35:277–278

    Google Scholar 

  • Multani DS, Khush GS, Delos Reyes BG, Brar DS (2003) Alien genes introgression and development of monosomic alien addition lines from Oryza latifolia Desv to rice, Oryza sativa L. TheorAppl Genet 107:395–405

    Article  CAS  Google Scholar 

  • Nayar NM (1973) Origin and cytogenetics of rice. Adv Genet 17:153–292

    Google Scholar 

  • Nezu M, Katayama TC, Kihara H (1960) Genetic study of the genus Oryza I Crossability and chromosomal affinity among 17 species. Seiken Jiho Rep Kihara Inst biol Res 11:1–11

    Google Scholar 

  • Nwokeocha CC, Faluyi JO, Aladejana FO (2007) Cytogenetic studies in the ABC genome of the genus Oryza. Linn Res J Bot 2:41–47

    CAS  Google Scholar 

  • Ogawa T (2003) Genome research in genus Oryza. In: Nanda JS, Sharma SD (eds) Monograph on genus Oryza. Science Publishers, Enfield, New Hampshire, pp 171–212

    Google Scholar 

  • Piegu B, Guyot R, Picault N, Roulin A, Saniyal A, Kim H, Panaud O (2006) Doubling genome size without polyploidization: dynamics of retro transposition-driven genomic expansions in Oryza australiensis, a wild relative of rice. Genome Res 16:1262–1269

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Rahman ML, Jiang W, Chu SH, Qiao Y, Ham TH, Woo MO, Brar DS (2009) High-resolution mapping of two rice brown planthopper resistance genes, Bph20 (t) and Bph21 (t), originating from Oryza minuta. Theor Appl Genet 119:1237–1246

    Article  PubMed  Google Scholar 

  • Ranganadhacharyulu N, Raj AY (1974) Pachytene analysis in an interspecific hybrid Oryza punctata Kotschy ex Steud × O eichingeri A Peter. Cytologia 39:233–243

    Article  Google Scholar 

  • Ray S, Bose LK, Ray J, Ngangkham U, Katara JL, Samantaray S, Wing RA (2016) Development and validation of cross-transferable and polymorphic DNA markers for detecting alien genome introgression in Oryza sativa. Mol Genet Genom 291:1783–1794

    Article  CAS  Google Scholar 

  • Renganayaki K, Fritz AK, Sadasivam S, Pammi S, Harrington SE, McCouch SR, Reddy AS (2002) Mapping and progress toward map-based cloning of brown planthopper biotype-4 resistance gene introgressed from into cultivated rice. Crop Sci 42:2112–2117

    Article  CAS  Google Scholar 

  • Sanchez AC, Brar DS, Huang N, Li Z, Khush GS (2000) Sequence tagged site marker-assisted selection for three bacterial blight resistance genes in rice. Crop Sci 40:792–797

    Article  CAS  Google Scholar 

  • Sharma SD, Dhua SR, Agrawal PK (2003) Species of genus Oryza and their interrelationships. Monograph on the genus Oryza. Science Publishers, Enfield, New Hampshire, pp 73–111

    Google Scholar 

  • Shastry SVS (1963) Application of pachytene analysis to evolutionary problems in the genus Oryza. Memoirs of The Indian Botanical Society (Memoir-4), pp 82–89

    Google Scholar 

  • Shastry SVS, Rao PM (1961) Pachytene analysis in Oryza. In: Proceedings of the Indian Academy of sciences-section B vol 54, pp 100–112

    Google Scholar 

  • Shcherban AB, Vaughan DA, Tomooka N (2000a) Isolation of a new retrotransposon-like DNA sequence and its use in analysis of diversity within the Oryza officinalis. Genetica 108:145–154

    Article  CAS  PubMed  Google Scholar 

  • Shcherban AB, Vaughan DA, Tomooka N, Kaga A (2000b) Diversity in the integrase coding domain of a gypsy-like retrotransposon among wild relatives of rice in the Oryza officinalis complex. Genetica 110:43–53

    Article  CAS  PubMed  Google Scholar 

  • Sitch LA, Romero GO (1990) Attempts to overcome prefertilization incompatibility in interspecific and intergeneric crosses involving Oryza sativa L. Genome 33:321–327

    Article  Google Scholar 

  • Sui Y, Li B, Shi J, Chen M (2014) Genomic, regulatory and epigenetic mechanisms underlying duplicated gene evolution in the natural allotetraploid Oryza minuta. BMC Genom 15:11

    Article  Google Scholar 

  • Tan GX, Ren X, Weng QM, Shi ZY, Zhu LL, He GC (2004a) Mapping of a new resistance gene to bacterial blight in rice line introgressed from Oryza officinalis. Acta Genetica Sinica 31:724–729

    CAS  PubMed  Google Scholar 

  • Tan GX, Weng QM, Ren X, Huang Z, Zhu LL, He GC (2004b) Two white backed planthopper resistance genes in rice share the same loci with those for brown planthopper resistance. Heredity 92:212–217

    Article  CAS  PubMed  Google Scholar 

  • Tan G, Jin H, Li G, He R, Zhu L, He G (2005) Production and characterization of a complete set of individual chromosome additions from Oryza officinalis to Oryza sativa using RFLP and GISH analyses. Theor Appl Genet 111:1585–1595

    Article  CAS  PubMed  Google Scholar 

  • Tang X, Bao W, Zhang W, Cheng Z (2007) Identification of chromosomes from multiple rice genomes using a universal molecular cytogenetic marker system. J Integr Plant Biol 49:953–960

    Article  CAS  Google Scholar 

  • Tang L, Zou XH, Achoundong G, Potgieter C, Second G, Zhang DY, Ge S (2010) Phylogeny and biogeography of the rice tribe (Oryzeae): evidence from combined analysis of 20 chloroplast fragments. Mol Phylogenet Evol 54:266–277

    Article  CAS  PubMed  Google Scholar 

  • Tateoka T (1962) Taxonomic studies of Oryza I O. latifolia complex II several species complexes. Bot Mag Tokyo 75:418–427

    Article  Google Scholar 

  • Tateoka T (1963) Taxonomic studies of Oryza III Key to the species and their enumeration. Bot Mag Tokyo 76:165–173

    Article  Google Scholar 

  • Tateoka T (1964) Taxonomic studies of the genus Oryza. In: IRRI (ed) Rice genetics and cytogenetics. Elsevier, Amsterdam, pp 15–21

    Google Scholar 

  • Vaughan DA (1989) The genus Oryza L: current status of taxonomy. IRRI, Los Baños, The Philippines, pp 1–21

    Google Scholar 

  • Vaughan DA (1994) The wild relatives of rice: a genetic resources handbook. IRRI, Manila

    Google Scholar 

  • Vaughan DA (2003) Genepools of the genus Oryza. In: Sharma SD, Nanda JS (eds) Monograph on genus Oryza. Science Publishers, Enfield, New Hampshire, pp 113–138

    Google Scholar 

  • Vaughan DA, Morishima H, Kadowaki K (2003) Diversity in the Oryza genus. Curr Opin Pl Biol 6:139–146

    Article  CAS  Google Scholar 

  • Vaughan DA, Kadowaki KI, Kaga A, Tomooka N (2005) On the phylogeny and biogeography of the genus Oryza. Breed Sci 55:113–122

    Article  CAS  Google Scholar 

  • Wang B, Ding Z, Liu W, Pan J, Li C, Ge S, Zhang D (2009) Polyploid evolution in Oryza officinalis complex of the genus Oryza. BMC Evol Biol 9:250

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Wang A, Zhang X, Yang C, Song Z, Du C, Chen D, Cai D (2013) Development and characterization of synthetic amphiploid (AABB) between Oryza sativa and Oryza punctata. Euphytica 189:1–8

    Article  Google Scholar 

  • Wang C, Liu X, Peng S, Xu Q, Yuan X, Feng Y, Hanyong Y, Yiping W, Wei X (2014) Development of novel microsatellite markers for the BBCC Oryza genome (Poaceae) using high-throughput sequencing technology. PloS one, 9(3), e91826

    Google Scholar 

  • Wendel JF (2000) Genome evolution in polyploids. In: Doyle JJ, Gaut BS (eds) Plant molecular evolution. Springer, Netherlands, pp 225–249

    Chapter  Google Scholar 

  • Wu Y, Sun Y, Wang X, Lin X, Sun S, Shen K, Liu B (2016) Transcriptome shock in an interspecific F1 triploid hybrid of Oryza revealed by RNA sequencing. J Int Plant Biol 58:150–164

    Article  CAS  Google Scholar 

  • Xuexing YWLKG (1993) Obtaining the Hybrids of Oryza sativa × O. officinalis without embryo culture by using male-sterile lines. Acta Genetica Sinica 26:160–161

    Google Scholar 

  • Yan H, Hu H, Fu Q, Yu H, Tang S, Xiong Z, Min S (1995) Morphological and cytogenetical studies of the hybrids between Oryza sativa and Oryza officinalis. Zhongguo Shuidao Kexue 10:138–142

    Google Scholar 

  • Yan H, Xiong Z, Min S, Hu H, Zhang Z, Tian S, Fu Q (1997) The production and cytogenetical studies of Oryza sativa–Oryza eichingeri amphiploid. Acta Genetica Sinica 24:32–34

    Google Scholar 

  • Yang H, Ren X, Weng Q, Zhu L, He G (2002) Molecular mapping and genetic analysis of a rice brown planthopper (Nilaparvata lugens Stål) resistance gene. Hereditas 136:39–43

    Article  PubMed  Google Scholar 

  • Yang H, You A, Yang Z, Zhang F, He R, Zhu L, He G (2004) High-resolution genetic mapping at the Bph15 locus for brown planthopper resistance in rice (Oryza sativa L). Theor and Appl Genet 110:182–191

    Article  CAS  Google Scholar 

  • Yasui H, Iwata N (1991) Production of monosomic alien addition lines of Oryza sativa having a single O. punctata chromosome In: Rice genetics II: proceedings of the Second International Rice Genetics Symposium, 14–18 May 1990, IRRI, pp 147–155

    Google Scholar 

  • Ying B, Song GE (2003) Identification of Oryza species with the CD genome using RFLP analysis on nuclear ribosomal ITS sequences. Acta Bot Sin 45:762–765

    Google Scholar 

  • Yoon DB, Kang KH, Kim HJ, Ju HG, Kwon SJ, Suh JP, Ahn SN (2006) Mapping quantitative trait loci for yield components and morphological traits in an advanced backcross population between Oryza grandiglumis and the O sativa japonica cultivar Hwaseongbyeo. Theor Appl Genet 112:1052–1062

    Article  CAS  PubMed  Google Scholar 

  • Zhang X, Wang W, Jin J, Liao S, Liu X, Song Z, Cai D (2013) Cytomorphological characterization of the backcross progeny of synthetic amphiploid rice (AABB) and tetraploid Oryza sativa (AAAA). J Agr Sci 5:30–37

    Google Scholar 

  • Zhong DB, Luo LJ, Guo LB, Ying CS (1997) Studies on resistance to brown planthopper (BPH) of hybrid between Oryza sativa and Oryza officinalis. Southwest China J Agric Sci 10:5–9

    Google Scholar 

  • Zou XH, Du YS, Tang L, Xu XW, Doyle JJ, Sang T, Ge S (2015) Multiple origins of BBCC allopolyploid species in the rice genus (Oryza). Sci Rep Uk 5:14876

    Article  CAS  Google Scholar 

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  1. Crop Improvement Division, National Rice Research Institute, Cuttack, 753006, Odisha, India

    Soham Ray, Mridul Chakraborti, Sutapa Sarkar, Lotan Kumar Bose & Onkar Nath Singh

  2. Integrated Rural Development and Management, Ramakrishna Mission Vivekananda University, Kolkata, India

    Joshitha Vijayan

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  3. Mridul Chakraborti
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  4. Sutapa Sarkar
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  5. Lotan Kumar Bose
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  6. Onkar Nath Singh
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Corresponding author

Correspondence to Soham Ray .

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Editors and Affiliations

  1. IARI Campus, ICAR-National Research Center on Plant Biotechnology, New Delhi, Delhi, India

    Tapan K. Mondal

  2. Queensland Alliance for Agriculture and Food Innovation, University of Queensland, St Lucia, Queensland, Australia

    Robert J. Henry

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Ray, S., Vijayan, J., Chakraborti, M., Sarkar, S., Bose, L.K., Singh, O.N. (2018). Oryza officinalis Complex. In: Mondal, T., Henry, R. (eds) The Wild Oryza Genomes. Compendium of Plant Genomes. Springer, Cham. https://doi.org/10.1007/978-3-319-71997-9_21

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