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RNA-seq Analysis in Plant–Fungus Interactions

  • Ho Chai-Ling
  • Wai-Yan Yee
Chapter

Abstract

Many fungi are pathogens that infect important food and plantation crops, reducing both yield and quality of food products. Understanding plant–fungus interactions is crucial as knowledge in this area is required to formulate sustainable strategies to improve plant health and crop productivity. High-throughput RNA-sequencing (RNA-seq) enables researchers to gain insights of the mixed and multispecies transcriptomes in plant–fungus interactions. Interpretation of huge data generated by RNA-seq has led to new insights in this area, facilitating a system approach in unraveling interactions between plant hosts and fungal pathogens. In this review, the application and challenges of RNA-seq analysis in plant–fungus interactions will be discussed.

Keywords

Challenges Functional genomics Multispecies transcriptomics Plant–fungus interactions RNA-seq 

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Copyright information

© Springer International Publishing AG 2017

Authors and Affiliations

  1. 1.Institute of Plantation StudiesUniversiti Putra MalaysiaSerdangMalaysia
  2. 2.Department of Cell and Molecular Biology, Faculty of Biotechnology and Biomolecular SciencesUniversiti Putra MalaysiaSerdangMalaysia
  3. 3.Codon Genomics S/BSeri KembanganMalaysia

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