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Genetic Maps and Whole Genome Sequences of Radish

  • Kenta Shirasawa
  • Hiroyasu Kitashiba
Chapter
Part of the Compendium of Plant Genomes book series (CPG)

Abstract

Radish, Raphanus sativus L., is a member of Brassicaceae, to which Arabidopsis thaliana , a model plant in plant biology, belongs, as do other Brassica species including important crops. However, genetic and genomic studies of radish have been behind those of Arabidopsis and Brassica. In this decade, much effort has been made to develop genetic resources for radish, e.g., DNA markers, genetic maps, and whole genome sequences. Studies using the obtained information have revealed the genome structure of radish in terms of ancestral karyotype and have also prompted the identification of genes for agronomically important traits in radish through a map-based cloning strategy and quantitative trait locus analysis. In this chapter, we review the evolving development of radish genetic map in the past 15 years and the current status of genome sequencing of radish. We also introduce the latest strategy for the construction of a high-density genetic map using next-generation sequencing technology and propose a prospective direction of genetics and genomics research in radish which would be helpful for researchers and breeders in their efforts to promote radish breeding programs efficiently.

Keywords

High-density genetic map Next-generation sequencing (NGS) Restriction-site associated DNA sequencing (RAD-seq) Raphanus Single nucleotide polymorphism (SNP) Whole genome sequence 

Supplementary material

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Supplementary material 1 (XLSX 418 kb)
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Supplementary material 2 (XLSX 45 kb)
395692_1_En_3_MOESM3_ESM.pdf (18 kb)
Supplementary Fig. 3.1 Comparison of lengths of Rs-RAD map based on MSTmap and Mapmaker programs (PDF 18 kb)

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Copyright information

© Springer International Publishing AG 2017

Authors and Affiliations

  1. 1.Kazusa DNA Research InstituteKisarazuJapan
  2. 2.Graduate School of Agricultural ScienceTohoku UniversitySendaiJapan

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