Functional data analysis of “Omics” data: how does the genomic landscape influence integration and fixation of endogenous retroviruses?

  • Marzia A. Cremona
  • Rebeca Campos-Sánchez
  • Alessia Pini
  • Simone Vantini
  • Kateryna D. Makova
  • Francesca Chiaromonte
Conference paper

DOI: 10.1007/978-3-319-55846-2_12

Part of the Contributions to Statistics book series (CONTRIB.STAT.)
Cite this paper as:
Cremona M.A., Campos-Sánchez R., Pini A., Vantini S., Makova K.D., Chiaromonte F. (2017) Functional data analysis of “Omics” data: how does the genomic landscape influence integration and fixation of endogenous retroviruses?. In: Aneiros G., G. Bongiorno E., Cao R., Vieu P. (eds) Functional Statistics and Related Fields. Contributions to Statistics. Springer, Cham

Abstract

We consider thousands of endogenous retrovirus detected in the human and mouse genomes, and quantify a large number of genomic landscape features at high resolution around their integration sites and in control regions. We propose to analyze this data employing a recently developed functional inferential procedure and functional logistic regression, with the aim of gaining insights on the effects of genomic landscape features on the integration and fixation of endogenous retroviruses.

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Copyright information

© Springer International Publishing AG 2017

Authors and Affiliations

  • Marzia A. Cremona
    • 1
  • Rebeca Campos-Sánchez
    • 2
  • Alessia Pini
    • 3
  • Simone Vantini
    • 3
  • Kateryna D. Makova
    • 4
  • Francesca Chiaromonte
    • 5
    • 6
  1. 1.Department of StatisticsPennsylvania State UniversityState CollegeUSA
  2. 2.Centro de Investigacin en Biologa Celular y MolecularUniversidad de Costa RicaSan PedroCosta Rica
  3. 3.MOX - Department of MathematicsPolitecnico di MilanoMilanItaly
  4. 4.Center for Medical Genomics and Department of BiologyPennsylvania State UniversityState CollegeUSA
  5. 5.Center for Medical Genomics and Department of StatisticsPennsylvania State UniversityState CollegeUSA
  6. 6.Sant’Anna School of Advanced StudiesPisaItaly

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