Skip to main content

Prediction of Ischemic Stroke Lesion and Clinical Outcome in Multi-modal MRI Images Using Random Forests

  • Conference paper
  • First Online:

Part of the book series: Lecture Notes in Computer Science ((LNIP,volume 10154))

Abstract

Herein, we present an automated segmentation method for ischemic stroke lesion segmentation in multi-modal MRI images. The method is based on an ensemble learning technique called random forest (RF), which generates several classifiers and combines their results in order to make decisions. In RF, we employ several meaningful features such as intensities, entropy, gradient etc. to classify the voxels in multi-modal MRI images. The segmentation method is validated on both training and testing data, obtained from MICCAI ISLES-2016 challenge dataset. The evaluation of the method is done by performing two tasks: ischemic stroke lesion outcome prediction (Task I) and clinical outcome prediction (Task II). For Task I, the performance of the method is evaluated relative to the manual segmentation, done by the clinical experts. For Task II, the performance of the method is evaluated relative to the 90 days mRS score, provided as ground truths by ISLES-2016 challenge organizers. The experimental results show the robustness of the segmentation method, and that it achieves reasonable accuracy for the prediction of both ischemic stroke lesion and clinical outcome in multi-modal MRI images.

This is a preview of subscription content, log in via an institution.

Buying options

Chapter
USD   29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD   39.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD   54.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Learn about institutional subscriptions

References

  1. The Atlas of Heart Disease and Stroke. http://www.who.int/cardiovascular_diseases/resources/atlas/en/

  2. Fassbender, K., Balucani, C., Walter, S., Levine, S.R., Haass, A., Grotta, J.: Streamlining of prehospital stroke management: the golden hour. Lancet Neurol. 12, 585–596 (2013)

    Article  Google Scholar 

  3. Feigin, V.L., Lawes, C.M., Bennett, D.A., Barker-Collo, S.L., Parag, V.: Worldwide Stroke incidence and early case fatality reported in 56 population-based studies: a systematic review. Lancet Neurol. 8, 355–369 (2009)

    Article  Google Scholar 

  4. Qaiser, M., Shaochuan, L., Andreas, F., Stefan, C., Artur, C., Andrew, M., Mikael, P.: A comparative study of automated segmentation methods for use in a microwave tomography system for imaging intracerebral hemorrhage in stroke patients. J. Electromagn. Anal. Appl. (JEMAA) 7, 152–167 (2015)

    Google Scholar 

  5. Ball, J.B., Pensak, M.L.: Fundamentals of magnetic resonance imaging. Am. J. Otol. 8, 81–85 (1987)

    Google Scholar 

  6. Moumen, T., E., Hashim, M., M.: Tumor segmentation in brain MRI using a fuzzy approach with class center priors. EURASIP J. Image Video Process., online (2014)

    Google Scholar 

  7. Oskar, M., Matthias, W., von der Janina, G., Ulrike, M.K., Thomas, F.M., Heinz, H.: Extra Tree forests for sub-acute ischemic stroke lesion segmentation in MR sequences. J. Neurosci. Methods 240, 89–100 (2014)

    Google Scholar 

  8. Rekik, I., Allassonniere, S., Carpenter, T.K., Wardlaw, J.M.: Medical image analysis methods In MR/CT-imaged acute-subacute ischemic stroke lesion: segmentation, prediction and insights into dynamic evolution simulation models. Critical Appraisal. NeuroImage Clinical 1, 164–178 (2012)

    Article  Google Scholar 

  9. Mitra, J., Bourgeat, P., Fripp, J., Ghose, S., et al.: Lesion segmentation from multimodal MRI using random forests following ischemic stroke. NeuroImage 98, 324–335 (2014)

    Article  Google Scholar 

  10. Seghier, M.L., Ramlackhansingh, A., Crinion, J., Leff, A.P., Price, C.J.: Lesion identification using unified segmentation-normalisation models and fuzzy clustering. NeuroImage 41, 1253–1266 (2008)

    Article  Google Scholar 

  11. Forbes, F., Doyle, S., Garcia-Lorenzo, D., Barillot, C., Dojat, M.: Adaptive weighted fusion of multiple MR sequences for brain lesion segmentation. In: IEEE International Symposium on Biomedical Imaging: From Nano to Macro (ISBI), pp. 69–72 (2010)

    Google Scholar 

  12. Oskar, M., Björn, M., Matthias, L., Stefan, W., et al.: ISLES 2015 - a public evaluation benchmark for ischemic stroke lesion segmentation from multispectral MRI. Med. Image Anal. 35, 250–269 (2017)

    Article  Google Scholar 

  13. Breiman, L.: Random forests. Mach. Learn. 45, 5–32 (2001)

    Article  MATH  Google Scholar 

  14. Criminisi, A., Shotton, J.: Decision forests for Computer Vision and Medical Image Analysis. Advances in Computer Vision and Pattern Recognition. Springer, London (2013)

    Book  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Qaiser Mahmood .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2016 Springer International Publishing AG

About this paper

Cite this paper

Mahmood, Q., Basit, A. (2016). Prediction of Ischemic Stroke Lesion and Clinical Outcome in Multi-modal MRI Images Using Random Forests. In: Crimi, A., Menze, B., Maier, O., Reyes, M., Winzeck, S., Handels, H. (eds) Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries. BrainLes 2016. Lecture Notes in Computer Science(), vol 10154. Springer, Cham. https://doi.org/10.1007/978-3-319-55524-9_23

Download citation

  • DOI: https://doi.org/10.1007/978-3-319-55524-9_23

  • Published:

  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-319-55523-2

  • Online ISBN: 978-3-319-55524-9

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics