Abstract
Herein, we present an automated segmentation method for ischemic stroke lesion segmentation in multi-modal MRI images. The method is based on an ensemble learning technique called random forest (RF), which generates several classifiers and combines their results in order to make decisions. In RF, we employ several meaningful features such as intensities, entropy, gradient etc. to classify the voxels in multi-modal MRI images. The segmentation method is validated on both training and testing data, obtained from MICCAI ISLES-2016 challenge dataset. The evaluation of the method is done by performing two tasks: ischemic stroke lesion outcome prediction (Task I) and clinical outcome prediction (Task II). For Task I, the performance of the method is evaluated relative to the manual segmentation, done by the clinical experts. For Task II, the performance of the method is evaluated relative to the 90 days mRS score, provided as ground truths by ISLES-2016 challenge organizers. The experimental results show the robustness of the segmentation method, and that it achieves reasonable accuracy for the prediction of both ischemic stroke lesion and clinical outcome in multi-modal MRI images.
This is a preview of subscription content, log in via an institution.
Buying options
Tax calculation will be finalised at checkout
Purchases are for personal use only
Learn about institutional subscriptionsReferences
The Atlas of Heart Disease and Stroke. http://www.who.int/cardiovascular_diseases/resources/atlas/en/
Fassbender, K., Balucani, C., Walter, S., Levine, S.R., Haass, A., Grotta, J.: Streamlining of prehospital stroke management: the golden hour. Lancet Neurol. 12, 585–596 (2013)
Feigin, V.L., Lawes, C.M., Bennett, D.A., Barker-Collo, S.L., Parag, V.: Worldwide Stroke incidence and early case fatality reported in 56 population-based studies: a systematic review. Lancet Neurol. 8, 355–369 (2009)
Qaiser, M., Shaochuan, L., Andreas, F., Stefan, C., Artur, C., Andrew, M., Mikael, P.: A comparative study of automated segmentation methods for use in a microwave tomography system for imaging intracerebral hemorrhage in stroke patients. J. Electromagn. Anal. Appl. (JEMAA) 7, 152–167 (2015)
Ball, J.B., Pensak, M.L.: Fundamentals of magnetic resonance imaging. Am. J. Otol. 8, 81–85 (1987)
Moumen, T., E., Hashim, M., M.: Tumor segmentation in brain MRI using a fuzzy approach with class center priors. EURASIP J. Image Video Process., online (2014)
Oskar, M., Matthias, W., von der Janina, G., Ulrike, M.K., Thomas, F.M., Heinz, H.: Extra Tree forests for sub-acute ischemic stroke lesion segmentation in MR sequences. J. Neurosci. Methods 240, 89–100 (2014)
Rekik, I., Allassonniere, S., Carpenter, T.K., Wardlaw, J.M.: Medical image analysis methods In MR/CT-imaged acute-subacute ischemic stroke lesion: segmentation, prediction and insights into dynamic evolution simulation models. Critical Appraisal. NeuroImage Clinical 1, 164–178 (2012)
Mitra, J., Bourgeat, P., Fripp, J., Ghose, S., et al.: Lesion segmentation from multimodal MRI using random forests following ischemic stroke. NeuroImage 98, 324–335 (2014)
Seghier, M.L., Ramlackhansingh, A., Crinion, J., Leff, A.P., Price, C.J.: Lesion identification using unified segmentation-normalisation models and fuzzy clustering. NeuroImage 41, 1253–1266 (2008)
Forbes, F., Doyle, S., Garcia-Lorenzo, D., Barillot, C., Dojat, M.: Adaptive weighted fusion of multiple MR sequences for brain lesion segmentation. In: IEEE International Symposium on Biomedical Imaging: From Nano to Macro (ISBI), pp. 69–72 (2010)
Oskar, M., Björn, M., Matthias, L., Stefan, W., et al.: ISLES 2015 - a public evaluation benchmark for ischemic stroke lesion segmentation from multispectral MRI. Med. Image Anal. 35, 250–269 (2017)
Breiman, L.: Random forests. Mach. Learn. 45, 5–32 (2001)
Criminisi, A., Shotton, J.: Decision forests for Computer Vision and Medical Image Analysis. Advances in Computer Vision and Pattern Recognition. Springer, London (2013)
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2016 Springer International Publishing AG
About this paper
Cite this paper
Mahmood, Q., Basit, A. (2016). Prediction of Ischemic Stroke Lesion and Clinical Outcome in Multi-modal MRI Images Using Random Forests. In: Crimi, A., Menze, B., Maier, O., Reyes, M., Winzeck, S., Handels, H. (eds) Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries. BrainLes 2016. Lecture Notes in Computer Science(), vol 10154. Springer, Cham. https://doi.org/10.1007/978-3-319-55524-9_23
Download citation
DOI: https://doi.org/10.1007/978-3-319-55524-9_23
Published:
Publisher Name: Springer, Cham
Print ISBN: 978-3-319-55523-2
Online ISBN: 978-3-319-55524-9
eBook Packages: Computer ScienceComputer Science (R0)