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Parcellation of Human Amygdala Subfields Using Orientation Distribution Function and Spectral K-means Clustering

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Computational Diffusion MRI (MICCAI 2016)

Part of the book series: Mathematics and Visualization ((MATHVISUAL))

Abstract

Amygdala plays an important role in fear and emotional learning, which are critical for human survival. Despite the functional relevance and unique circuitry of each human amygdaloid subnuclei, there has yet to be an efficient imaging method for identifying these regions in vivo. A data-driven approach without prior knowledge provides advantages of efficient and objective assessments. The present study uses high angular and high spatial resolution diffusion magnetic resonance imaging to generate orientation distribution function, which bears distinctive microstructural features. The features were extracted using spherical harmonic decomposition to assess microstructural similarity within amygdala subfields that are identified via similarity matrices using spectral k-mean clustering. The approach was tested on 32 healthy volunteers and three distinct amygdala subfields were identified including medial, posterior-superior lateral, and anterior-inferior lateral.

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References

  1. Aggleton, J.P.: The Amygdala: Neurobiological Aspects of Emotion, Memory, and Mental Dysfunction, xii, 615 p. Wiley-Liss., New York; Chichester (1992)

    Google Scholar 

  2. Barr, M.L., Kiernan, J.A.: The Human Nervous System: An Anatomical Viewpoint, 6th edn, vii, 451 p. Lippincott, Philadelphia (1993)

    Google Scholar 

  3. Pitkanen, A., Savander, V., LeDoux, J.E.: Organization of intra-amygdaloid circuitries in the rat: an emerging framework for understanding functions of the amygdala. Trends Neurosci. 20(11), 517–523 (1997)

    Article  Google Scholar 

  4. Whalen, P.J., et al.: Functional neuroimaging studies of the amygdala in depression. Semin. Clin. Neuropsychiatry. 7(4), 234–242 (2002)

    Article  Google Scholar 

  5. Entis, J.J., et al.: A reliable protocol for the manual segmentation of the human amygdala and its subregions using ultra-high resolution MRI. Neuroimage. 60(2), 1226–1235 (2012)

    Article  Google Scholar 

  6. Saygin, Z.M., et al.: Connectivity-based segmentation of human amygdala nuclei using probabilistic tractography. Neuroimage. 56(3), 1353–1361 (2011)

    Article  MathSciNet  Google Scholar 

  7. Bach, D.R., et al.: Deep and superficial amygdala nuclei projections revealed in vivo by probabilistic tractography. J. Neurosci. 31(2), 618–623 (2011)

    Article  Google Scholar 

  8. Balderston, N.L., et al.: Functionally distinct amygdala subregions identified using DTI and high-resolution fMRI. Soc. Cogn. Affect. Neurosci. 10(12), 1615–1622 (2015)

    Article  Google Scholar 

  9. Solano-Castiella, E., et al.: Diffusion tensor imaging segments the human amygdala in vivo. Neuroimage. 49(4), 2958–2965 (2010)

    Article  Google Scholar 

  10. Basser, P.J., Mattiello, J., LeBihan, D.: MR diffusion tensor spectroscopy and imaging. Biophys. J. 66(1), 259–267 (1994)

    Article  Google Scholar 

  11. Wu, Y.C.: Diffusion MRI: Tensors and Beyond in Medical Physics, p. 150. University of Wisconsin-Madison, Madison (2006)

    Google Scholar 

  12. Tournier, J.D., Mori, S., Leemans, A.: Diffusion tensor imaging and beyond. Magn. Reson. Med. 65(6), 1532–1556 (2011)

    Article  Google Scholar 

  13. Alexander, D.C.: Multiple-fiber reconstruction algorithms for diffusion MRI. Ann. N. Y. Acad. Sci. 1064, 113–133 (2005)

    Article  Google Scholar 

  14. Tuch, D.S.: Q-ball imaging. Magn. Reson. Med. 52(6), 1358–1372 (2004)

    Article  Google Scholar 

  15. Tournier, J.D., et al.: Direct estimation of the fiber orientation density function from diffusion-weighted MRI data using spherical deconvolution. Neuroimage. 23(3), 1176–1185 (2004)

    Article  Google Scholar 

  16. Hess, C.P., et al.: Q-ball reconstruction of multimodal fiber orientations using the spherical harmonic basis. Magn. Reson. Med. 56(1), 104–117 (2006)

    Article  Google Scholar 

  17. Wedeen, V.J., et al.: Mapping complex tissue architecture with diffusion spectrum magnetic resonance imaging. Magn. Reson. Med. 54(6), 1377–1386 (2005)

    Article  Google Scholar 

  18. Rathi, Y., et al.: Directional functions for orientation distribution estimation. Med. Image Anal. 13(3), 432–444 (2009)

    Article  Google Scholar 

  19. Frank, L.R.: Characterization of anisotropy in high angular resolution diffusion-weighted MRI. Magn. Reson. Med. 47(6), 1083–1099 (2002)

    Article  Google Scholar 

  20. Alexander, D.C., Barker, G.J., Arridge, S.R.: Detection and modeling of non-Gaussian apparent diffusion coefficient profiles in human brain data. Magn. Reson. Med. 48(2), 331–340 (2002)

    Article  Google Scholar 

  21. von Luxburg, U.: A tutorial on spectral clustering. Stat. Comput. 17(4), 395–416 (2007)

    Article  MathSciNet  Google Scholar 

  22. Wu, Y.C., Field, A.S., Alexander, A.L.: Computation of diffusion function measures in q-space using magnetic resonance hybrid diffusion imaging. IEEE Trans. Med. Imaging. 27(6), 858–865 (2008)

    Article  Google Scholar 

Download references

Acknowledgements

Supported in part by Dartmouth Synergy, Indiana Alzheimer Disease Center pilot grant, NIH R01 MH080716, R01 EB022574, R01 LM011360, R01 AG19771 and P30 AG10133.

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Correspondence to Yu-Chien Wu .

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Wen, Q., Stirling, B.D., Sha, L., Shen, L., Whalen, P.J., Wu, YC. (2017). Parcellation of Human Amygdala Subfields Using Orientation Distribution Function and Spectral K-means Clustering. In: Fuster, A., Ghosh, A., Kaden, E., Rathi, Y., Reisert, M. (eds) Computational Diffusion MRI. MICCAI 2016. Mathematics and Visualization. Springer, Cham. https://doi.org/10.1007/978-3-319-54130-3_10

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