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Genome Sequencing, Transcriptomics, and Proteomics

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Book cover The Olive Tree Genome

Part of the book series: Compendium of Plant Genomes ((CPG))

Abstract

This review encompasses the current status of major areas of progress in olive tree genome sequencing, including insights into genome function derived from large-scale gene expressing profiling, and studies on genomic architecture of repetitive sequences, smaller RNA, and proteomics. Olive tree genomics, as well as other omics, is progressing owing to recent developments in next-generation sequencing (NGS) technologies. Biological insights, therefore, are not only resulted from the sequencing initiative, since from genetic mapping, gene expression profiling, gene discovery research, and proteomics over nearly last seven years a large amount of information has been provided by different laboratories. The availability of high-quality genome assembly provides olive biologists with valuable new tools to improve and develop new varieties more efficiently, enabling the implementation of marker-assisted selection and genomic selection, and contributing to the comprehension of the molecular determinants of key traits peculiar to the species of olive tree and giving important clues concerning the evolution of its complex genome.

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Acknowledgments

This research was partially supported by Project MIPAF “OLEA—Genomica e Miglioramento genetico dell’olivo,” D.M. 27011/7643/10. We thank the Roche Diagnostic Spa, Applied Science to support the OLEA Italian Project.

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Authors and Affiliations

  1. Laboratory of Molecular Ecophysiology and Biotechnology of Woody Plants, Department of Agricultural and Forestry Science, University of Tuscia, S.N.C., Via S.C. De Lellis, s.n.c., 01100, Viterbo, Italy

    Rosario Muleo

  2. Department of Crop and Environmental Sciences, University of Udine, Via delle Scienze, 208, loc. Rizzi, 33100, Udine, Italy

    Michele Morgante

  3. IGA Technology Service, Via J. Linussio, 51 Z.I.U, 33100, Udine, Italy

    Michele Morgante, Federica Cattonaro & Simone Scalabrin

  4. Department of Agricultural, Food and Environmental Sciences, University of Pisa, Via del Borghetto 80, 56124, Pisa, Italy

    Andrea Cavallini & Lucia Natali

  5. Italian National Agency for New Technologies, Energy and Sustainable Economic Development, TRISAIA Research Center, S. S. 106 Jonica Km 419+500, 75026, Rotondella, Matera, Italy

    Gaetano Perrotta & Loredana Lopez

  6. Research and Innovation Centre, Fondazione Edmund Mach, via Mach 1, 38010, San Michele All’Adige, Trento, Italy

    Riccardo Velasco

  7. Department of Horticultural Genetics and Biotechnology, Mediterranean Agronomic Institute of Chania (MAICH), Alsyllio Agrokepio, 1 Makedonias str., 73100, Chania, Crete, Greece

    Panagiotis Kalaitzis

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  1. Rosario Muleo
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  2. Michele Morgante
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  3. Federica Cattonaro
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  5. Andrea Cavallini
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  6. Lucia Natali
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  8. Loredana Lopez
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  9. Riccardo Velasco
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  10. Panagiotis Kalaitzis
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Corresponding author

Correspondence to Rosario Muleo .

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Editors and Affiliations

  1. DAFNE, University of Tuscia, Viterbo, Italy

    Eddo Rugini

  2. Institute of Biosciences and Bioresources, National Research Council, Perugia, Italy

    Luciana Baldoni

  3. DAFNE, University of Tuscia, Viterbo, Italy

    Rosario Muleo

  4. Scuola Superiore Sant’Anna, Pisa, Italy

    Luca Sebastiani

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Muleo, R. et al. (2016). Genome Sequencing, Transcriptomics, and Proteomics. In: Rugini, E., Baldoni, L., Muleo, R., Sebastiani, L. (eds) The Olive Tree Genome. Compendium of Plant Genomes. Springer, Cham. https://doi.org/10.1007/978-3-319-48887-5_9

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